Pregenerated sensors for LINC00641 (Homo sapiens)
Ensembl gene IDs: ENSG00000258441Ensembl transcript IDs: ENST00000555379.1, ENST00000555688.1
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACTAGATTCTACCAAGGGCTACTCCTGCTGCTCAAGGCAAAGAGCTaGGTCACCACTCAAAGGAAAAATACTGAGGGTCAGTCCAGGATG | + |
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Preference number: 5 (lower is better) Translates to: TRFYQGLLLLLKAKS*VTTQRKNTEGQSRM Trigger: CATCCTGGACTGACCCTCAGTATTTTTCCTTTGAGTGGTGACCCAGCTCTTTGCCTTGAGCAGCAGGAGTAGCCCTTGGTAGAATCTAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 90 bp | TTTAGAACTCGTGCAATGTCACTGCCAGGTGCTTGTAATAGTCCATaGCAGGCATCAAGAGTAGAAACTTGGCTAGACACAGTGGCTCAC | + |
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Preference number: 5 (lower is better) Translates to: FRTRAMSLPGACNSP*QASRVETWLDTVAH Trigger: GTGAGCCACTGTGTCTAGCCAAGTTTCTACTCTTGATGCCTGCCATGGACTATTACAAGCACCTGGCAGTGACATTGCACGAGTTCTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | GGATGGGGACAATGGCAGGGCAGATCACAGCATTTCCAGCACGTATaGAAACAACTGTTTAGGCTGCTTTCATACTGCTGTATAAAACCC | + |
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Preference number: 5 (lower is better) Translates to: GWGQWQGRSQHFQHV*KQLFRLLSYCCIKP Trigger: GGGTTTTATACAGCAGTATGAAAGCAGCCTAAACAGTTGTTTTCATACGTGCTGGAAATGCTGTGATCTGCCCTGCCATTGTCCCCATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 90 bp | CAGAAGCTGCTAAGTATGAATGTGCTCAAGAAGAGAACTGAGAATTaGCTTCAAGTTGCAAAAGAGAGGGGGACAAGGCTATGGAACCAC | + |
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Preference number: 5 (lower is better) Translates to: QKLLSMNVLKKRTEN*LQVAKERGTRLWNH Trigger: GTGGTTCCATAGCCTTGTCCCCCTCTCTTTTGCAACTTGAAGGCAATTCTCAGTTCTCTTCTTGAGCACATTCATACTTAGCAGCTTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | TCAATGAGTATGACTGTAGTGCTACGAAGAAGAGATTCCTGGTTTTaGCAGCCTATCGGCCTGGTTAAGAAAGAAAGGGTAGGCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SMSMTVVLRRRDSWF*QPIGLVKKERVGFL Trigger: CAGAAAGCCTACCCTTTCTTTCTTAACCAGGCCGATAGGCTGTCAAAACCAGGAATCTCTTCTTCGTAGCACTACAGTCATACTCATTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | GTGAAAGCTGGACTAGTAAAACTTACCCATAAGAATGCACCCATTTaGGACAGGCACAAGACATTACAACGCTCCTCTAGGTGTGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: VKAGLVKLTHKNAPI*DRHKTLQRSSRCVL Trigger: CAACACACACCTAGAGGAGCGTTGTAATGTCTTGTGCCTGTCTCAAATGGGTGCATTCTTATGGGTAAGTTTTACTAGTCCAGCTTTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | TGCCCCTCTCTCATCCTTGGCATGAGATTACTGATTACGAATTACTaGGGGATTTGTTGGAGACTGACACTAGGAGAGGAATGTGAACTA | + |
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Preference number: 5 (lower is better) Translates to: CPSLILGMRLLITNY*GICWRLTLGEECEL Trigger: TAGTTCACATTCCTCTCCTAGTGTCAGTCTCCAACAAATCCCTCAGTAATTCGTAATCAGTAATCTCATGCCAAGGATGAGAGAGGGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 90 bp | GACTGGGTAATTTATAAAGGATCTTGTTTGACAGTTCTGCGTGGCTaGGGAGGCCTCAGGAAACTTAAAATCATGGCAGAAAGTGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: DWVIYKGSCLTVLRG*GGLRKLKIMAESEA Trigger: TGCTTCACTTTCTGCCATGATTTTAAGTTTCCTGAGGCCTCCCCAGCCACGCAGAACTGTCAAACAAGATCCTTTATAAATTACCCAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | GAAGGCTATGTCCCAAATTCACTGCAACTTCATTATTGTGGCTTGTaGGGGTCTGCAAAAGTGACTGAATCTTTGTCACTGGACCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: EGYVPNSLQLHYCGL*GSAKVTESLSLDLF Trigger: AAAGAGGTCCAGTGACAAAGATTCAGTCACTTTTGCAGACCCTCACAAGCCACAATAATGAAGTTGCAGTGAATTTGGGACATAGCCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | GGATATTCAGAAGCTGCTAAGTATGAATGTGCTCAAGAAGAGAACTaGGAATTGCCTTCAAGTTGCAAAAGAGAGGGGGACAAGGCTATG | + |
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Preference number: 5 (lower is better) Translates to: GYSEAAKYECAQEEN*ELPSSCKREGDKAM Trigger: CATAGCCTTGTCCCCCTCTCTTTTGCAACTTGAAGGCAATTCTCAGTTCTCTTCTTGAGCACATTCATACTTAGCAGCTTCTGAATATCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | ATTCACTGCAACTTCATTATTGTGGCTTGTGAGGGTCTGCAAAAGTaGCTGAATCTTTGTCACTGGACCTCTTTCACATTAATGTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: IHCNFIIVACEGLQK*LNLCHWTSFTLMSL Trigger: CAGGGACATTAATGTGAAAGAGGTCCAGTGACAAAGATTCAGTCACTTTTGCAGACCCTCACAAGCCACAATAATGAAGTTGCAGTGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 90 bp | AGTGAGAAGCTCTTGAGGAAAGATGTCCTTACACATTCAGGTGAGTaGTTAAAACAAAGCAGCATATACTTCACTGAGGAGTACTGCCAT | + |
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Preference number: 5 (lower is better) Translates to: SEKLLRKDVLTHSGE*LKQSSIYFTEEYCH Trigger: ATGGCAGTACTCCTCAGTGAAGTATATGCTGCTTTGTTTTAAGCACTCACCTGAATGTGTAAGGACATCTTTCCTCAAGAGCTTCTCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 90 bp | TCTGAGTCATTGAACTTGACGGGTGGATTCTTGGATCAAGAATTTTaGGGAGGGAAGGCTATGTCCCAAATTCACTGCAACTTCATTATT | + |
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Preference number: 5 (lower is better) Translates to: SESLNLTGGFLDQEF*GGKAMSQIHCNFII Trigger: AATAATGAAGTTGCAGTGAATTTGGGACATAGCCTTCCCTCCCCAAAATTCTTGATCCAAGAATCCACCCGTCAAGTTCAATGACTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 90 bp | AAATGGACACACCCAACTTTTTGGATAATGCCCCTCTCTCATCCTTaGCATGAGATTACTGATTACGAATTACTGAGGGATTTGTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: KWTHPTFWIMPLSHP*HEITDYELLRDLLE Trigger: CTCCAACAAATCCCTCAGTAATTCGTAATCAGTAATCTCATGCCAAGGATGAGAGAGGGGCATTATCCAAAAAGTTGGGTGTGTCCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | ATGATGGCAGAGAGATTTCTGGAGTGCTGGTTATGTTCCACATCCTaGTCAGAGTGGTGTTTCAACTGGCATGTTTACTTTGTAAATCTT | + |
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Preference number: 5 (lower is better) Translates to: MMAERFLECWLCSTS*SEWCFNWHVYFVNL Trigger: AAGATTTACAAAGTAAACATGCCAGTTGAAACACCACTCTGATCAGGATGTGGAACATAACCAGCACTCCAGAAATCTCTCTGCCATCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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| CDS TCA 90 bp | ATGGCAGACTTTCAGCTGTTAGCCAGGCACTGCTCAATATGCTCTTaGAACTATTCAATCTATGAAACGACTCTAGCCCTCATTAATAGA | + |
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Preference number: 5 (lower is better) Translates to: MADFQLLARHCSICS*NYSIYETTLALINR Trigger: TCTATTAATGAGGGCTAGAGTCGTTTCATAGATTGAATAGTTTCAAGAGCATATTGAGCAGTGCCTGGCTAACAGCTGAAAGTCTGCCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 90 bp | TTTCAGTGCTGTTGGAGCTTATTAAAGTCAATTACAGCTCAGAATTaGAGTGAAGTTAACTTCCTTGGGGGCATCCCTCAATCAATTGGA | + |
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Preference number: 5 (lower is better) Translates to: FQCCWSLLKSITAQN*SEVNFLGGIPQSIG Trigger: TCCAATTGATTGAGGGATGCCCCCAAGGAAGTTAACTTCACTGCAATTCTGAGCTGTAATTGACTTTAATAAGCTCCAACAGCACTGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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| CDS CCA 90 bp | AGCAGACACCAAGACATTATGGTCCATAGAAAGGTTAAGCCTGGATaGAAACTAGTAAAGTTGTTAACCAACGACCACACTAGAAATGGA | + |
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Preference number: 5 (lower is better) Translates to: SRHQDIMVHRKVKPG*KLVKLLTNDHTRNG Trigger: TCCATTTCTAGTGTGGTCGTTGGTTAACAACTTTACTAGTTTCCATCCAGGCTTAACCTTTCTATGGACCATAATGTCTTGGTGTCTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 90 bp | TGGTTGGCAGCCTCTATATCTAAAGGTGAATATGCACATATTCTATaGACCAGTAATTCCACCCCATTACATACCCATCACAAATGTACA | + |
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Preference number: 5 (lower is better) Translates to: WLAASISKGEYAHIL*TSNSTPLHTHHKCT Trigger: TGTACATTTGTGATGGGTATGTAATGGGGTGGAATTACTGGTTCATAGAATATGTGCATATTCACCTTTAGATATAGAGGCTGCCAACCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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| CDS TCA 90 bp | AAACTAGTAAAGTTGTTAACCAACGACCACACTAGAAATGGAGTCTaGGTCATTGAACTTGACGGGTGGATTCTTGGATCAAGAATTTTG | + |
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Preference number: 5 (lower is better) Translates to: KLVKLLTNDHTRNGV*VIELDGWILGSRIL Trigger: CAAAATTCTTGATCCAAGAATCCACCCGTCAAGTTCAATGACTCAGACTCCATTTCTAGTGTGGTCGTTGGTTAACAACTTTACTAGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 90 bp | CTCTTTAAAAACTTAAGTATCCTTAAAACAGGGAGGGACAATAAATaGAGCAGACACCAAGACATTATGGTCCATAGAAAGGTTAAGCCT | + |
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Preference number: 5 (lower is better) Translates to: LFKNLSILKTGRDNK*SRHQDIMVHRKVKP Trigger: AGGCTTAACCTTTCTATGGACCATAATGTCTTGGTGTCTGCTGCATTTATTGTCCCTCCCTGTTTTAAGGATACTTAAGTTTTTAAAGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | ACTCTCACAAGAACAGCATGGGGGAAACTGCCCCCATaGTCCAGTCACCTCCCACCGAGTCCCTCCCTCAAC | + |
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Preference number: 6 (lower is better) Translates to: TLTRTAWGKLPP*SSHLPPSPSLN Trigger: GTTGAGGGAGGGACTCGGTGGGAGGTGACTGGATCATGGGGGCAGTTTCCCCCATGCTGTTCTTGTGAGAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 72 bp | CCTGGGGAACTAGATTCTACCAAGGGCTACTCCTGCTaGTCAAGGCAAAGAGCTGGGTCACCACTCAAAGGA | + |
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Preference number: 6 (lower is better) Translates to: PGELDSTKGYSC*SRQRAGSPLKG Trigger: TCCTTTGAGTGGTGACCCAGCTCTTTGCCTTGAGCAGCAGGAGTAGCCCTTGGTAGAATCTAGTTCCCCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | TACCAACAATTTTGTCAACCAGACCCCAGTGGCACCTaGGACCTTGGGACTGACCAAGCTGGTGCTACAGAA | + |
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Preference number: 6 (lower is better) Translates to: YQQFCQPDPSGT*DLGTDQAGATE Trigger: TTCTGTAGCACCAGCTTGGTCAGTCCCAAGGTCCCAGGTGCCACTGGGGTCTGGTTGACAAAATTGTTGGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | GCTCTAGCTGGTTATTTAGCAGACTACCCTGTGGTTTaGGGTAATTTCCCCCAGGAGGGCCAATGGGGACTT | + |
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Preference number: 6 (lower is better) Translates to: ALAGYLADYPVV*GNFPQEGQWGL Trigger: AAGTCCCCATTGGCCCTCCTGGGGGAAATTACCTCAAACCACAGGGTAGTCTGCTAAATAACCAGCTAGAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | TGGAACAGAGAAAATAAGGGGACATATAGCAGAGGCTaGACAGATCAGCAAGGGTCAGGCTATCTCTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: WNRENKGTYSRG*TDQQGSGYLWP Trigger: AGGCCAGAGATAGCCTGACCCTTGCTGATCTGTCCAGCCTCTGCTATATGTCCCCTTATTTTCTCTGTTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | CGTGCAATGTCACTGCCAGGTGCTTGTAATAGTCCATaGCAGGCATCAAGAGTAGAAACTTGGCTAGACACA | + |
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Preference number: 6 (lower is better) Translates to: RAMSLPGACNSP*QASRVETWLDT Trigger: TGTGTCTAGCCAAGTTTCTACTCTTGATGCCTGCCATGGACTATTACAAGCACCTGGCAGTGACATTGCACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | TTCTGTCTCTCTACCATCTTTCCCACTCCTGCATCCTaGAGCCAAACGCCAAATAAACTACTGCACTCAAGT | + |
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Preference number: 6 (lower is better) Translates to: FCLSTIFPTPAS*SQTPNKLLHSS Trigger: ACTTGAGTGCAGTAGTTTATTTGGCGTTTGGCTCCAGGATGCAGGAGTGGGAAAGATGGTAGAGAGACAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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| CDS CAA 72 bp | ATGTGCTCAAGAAGAGAACTGAGAATTGCCTTCAAGTaGCAAAAGAGAGGGGGACAAGGCTATGGAACCACC | + |
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Preference number: 6 (lower is better) Translates to: MCSRRELRIAFK*QKRGGQGYGTT Trigger: GGTGGTTCCATAGCCTTGTCCCCCTCTCTTTTGCAACTTGAAGGCAATTCTCAGTTCTCTTCTTGAGCACAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | CAATGGCAGGGCAGATCACAGCATTTCCAGCACGTATaGAAACAACTGTTTAGGCTGCTTTCATACTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: QWQGRSQHFQHV*KQLFRLLSYCC Trigger: ACAGCAGTATGAAAGCAGCCTAAACAGTTGTTTTCATACGTGCTGGAAATGCTGTGATCTGCCCTGCCATTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 72 bp | AGACCAAGTCTTTCTTTAGAACTCGTGCAATGTCACTaGCAGGTGCTTGTAATAGTCCATGGCAGGCATCAA | + |
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Preference number: 6 (lower is better) Translates to: RPSLSLELVQCH*QVLVIVHGRHQ Trigger: TTGATGCCTGCCATGGACTATTACAAGCACCTGGCAGTGACATTGCACGAGTTCTAAAGAAAGACTTGGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 72 bp | GAATTTTGGGGAGGGAAGGCTATGTCCCAAATTCACTaGAACTTCATTATTGTGGCTTGTGAGGGTCTGCAA | + |
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Preference number: 6 (lower is better) Translates to: EFWGGKAMSQIH*NFIIVACEGLQ Trigger: TTGCAGACCCTCACAAGCCACAATAATGAAGTTGCAGTGAATTTGGGACATAGCCTTCCCTCCCCAAAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CAA 90 bp | ACACTAGAAATGGAGTCTGAGTCATTGAACTTGACGGGTGGATTCTaGGATCAAGAATTTTGGGGAGGGAAGGCTATGTCCCAAATTCAC | + |
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Preference number: 6 (lower is better) Translates to: TLEMESESLNLTGGF*DQEFWGGKAMSQIH Trigger: GTGAATTTGGGACATAGCCTTCCCTCCCCAAAATTCTTGATCCAAGAATCCACCCGTCAAGTTCAATGACTCAGACTCCATTTCTAGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | ATGACTGTAGTGCTACGAAGAAGAGATTCCTGGTTTTaGCAGCCTATCGGCCTGGTTAAGAAAGAAAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: MTVVLRRRDSWF*QPIGLVKKERV Trigger: TACCCTTTCTTTCTTAACCAGGCCGATAGGCTGTCAAAACCAGGAATCTCTTCTTCGTAGCACTACAGTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | GGACTAGTAAAACTTACCCATAAGAATGCACCCATTTaGGACAGGCACAAGACATTACAACGCTCCTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: GLVKLTHKNAPI*DRHKTLQRSSR Trigger: CCTAGAGGAGCGTTGTAATGTCTTGTGCCTGTCTCAAATGGGTGCATTCTTATGGGTAAGTTTTACTAGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | GACAGATCAGCAAGGGTCAGGCTATCTCTGGCCTTGTaGACTGTGTTAAAAAGTTTTGTCATTATCCTAAGG | + |
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Preference number: 6 (lower is better) Translates to: DRSARVRLSLAL*TVLKSFVIILR Trigger: CCTTAGGATAATGACAAAACTTTTTAACACAGTCCACAAGGCCAGAGATAGCCTGACCCTTGCTGATCTGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CAA 72 bp | ATTGAACTTGACGGGTGGATTCTTGGATCAAGAATTTaGGGGAGGGAAGGCTATGTCCCAAATTCACTGCAA | + |
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Preference number: 6 (lower is better) Translates to: IELDGWILGSRI*GREGYVPNSLQ Trigger: TTGCAGTGAATTTGGGACATAGCCTTCCCTCCCCAAAATTCTTGATCCAAGAATCCACCCGTCAAGTTCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CAA 72 bp | ACGACCACACTAGAAATGGAGTCTGAGTCATTGAACTaGACGGGTGGATTCTTGGATCAAGAATTTTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: TTTLEMESESLN*TGGFLDQEFWG Trigger: TCCCCAAAATTCTTGATCCAAGAATCCACCCGTCAAGTTCAATGACTCAGACTCCATTTCTAGTGTGGTCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CAA 72 bp | CTGGACAGATCAGCAAGGGTCAGGCTATCTCTGGCCTaGTGGACTGTGTTAAAAAGTTTTGTCATTATCCTA | + |
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Preference number: 6 (lower is better) Translates to: LDRSARVRLSLA*WTVLKSFVIIL Trigger: TAGGATAATGACAAAACTTTTTAACACAGTCCACAAGGCCAGAGATAGCCTGACCCTTGCTGATCTGTCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | TTTCAGCTGTTAGCCAGGCACTGCTCAATATGCTCTTaGAACTATTCAATCTATGAAACGACTCTAGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: FQLLARHCSICS*NYSIYETTLAL Trigger: GAGGGCTAGAGTCGTTTCATAGATTGAATAGTTTCAAGAGCATATTGAGCAGTGCCTGGCTAACAGCTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | GTCCCAAATTCACTGCAACTTCATTATTGTGGCTTGTaGGGGTCTGCAAAAGTGACTGAATCTTTGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: VPNSLQLHYCGL*GSAKVTESLSL Trigger: CAGTGACAAAGATTCAGTCACTTTTGCAGACCCTCACAAGCCACAATAATGAAGTTGCAGTGAATTTGGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | AAGTTGTTAACCAACGACCACACTAGAAATGGAGTCTaGGTCATTGAACTTGACGGGTGGATTCTTGGATCA | + |
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Preference number: 6 (lower is better) Translates to: KLLTNDHTRNGV*VIELDGWILGS Trigger: TGATCCAAGAATCCACCCGTCAAGTTCAATGACTCAGACTCCATTTCTAGTGTGGTCGTTGGTTAACAACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | AGCATGACTAGTAAGAGGAACAAAGTCCAATGTGGTTaGAACAGAGAAAATAAGGGGACATATAGCAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: SMTSKRNKVQCG*NRENKGTYSRG Trigger: GCCTCTGCTATATGTCCCCTTATTTTCTCTGTTCCAACCACATTGGACTTTGTTCCTCTTACTAGTCATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | CACCCAACTTTTTGGATAATGCCCCTCTCTCATCCTTaGCATGAGATTACTGATTACGAATTACTGAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: HPTFWIMPLSHP*HEITDYELLRD Trigger: ATCCCTCAGTAATTCGTAATCAGTAATCTCATGCCAAGGATGAGAGAGGGGCATTATCCAAAAAGTTGGGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | GGCACAAGACATTACAACGCTCCTCTAGGTGTGTGTTaGATAGTTAGTTCTTCAGCTTTGCTTTGCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: GTRHYNAPLGVC*IVSSSALLCIS Trigger: AGAAATGCAAAGCAAAGCTGAAGAACTAACTATTCAACACACACCTAGAGGAGCGTTGTAATGTCTTGTGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 72 bp | TGTTGGAGCTTATTAAAGTCAATTACAGCTCAGAATTaGAGTGAAGTTAACTTCCTTGGGGGCATCCCTCAA | + |
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Preference number: 6 (lower is better) Translates to: CWSLLKSITAQN*SEVNFLGGIPQ Trigger: TTGAGGGATGCCCCCAAGGAAGTTAACTTCACTGCAATTCTGAGCTGTAATTGACTTTAATAAGCTCCAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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| CDS TCA 72 bp | AACTTCATTATTGTGGCTTGTGAGGGTCTGCAAAAGTaGCTGAATCTTTGTCACTGGACCTCTTTCACATTA | + |
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Preference number: 6 (lower is better) Translates to: NFIIVACEGLQK*LNLCHWTSFTL Trigger: TAATGTGAAAGAGGTCCAGTGACAAAGATTCAGTCACTTTTGCAGACCCTCACAAGCCACAATAATGAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 72 bp | TTCCACCCCATTACATACCCATCACAAATGTACACATaGGTGTTCTCAAAAGACATGTACAGGAATGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: FHPITYPSQMYT*VFSKDMYRNVH Trigger: ATGAACATTCCTGTACATGTCTTTTGAGAACACGCATGTGTACATTTGTGATGGGTATGTAATGGGGTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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| CDS CCA 72 bp | ATATTTGGAAAAGTTTGTCTTCTGGGCCAGAAGAAATaGTTTAAAATACACGTTGTGGGTGGGAGAAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: IFGKVCLLGQKK*FKIHVVGGRSC Trigger: ACAGCTTCTCCCACCCACAACGTGTATTTTAAACCATTTCTTCTGGCCCAGAAGACAAACTTTTCCAAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | CAAGACATTATGGTCCATAGAAAGGTTAAGCCTGGATaGAAACTAGTAAAGTTGTTAACCAACGACCACACT | + |
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Preference number: 6 (lower is better) Translates to: QDIMVHRKVKPG*KLVKLLTNDHT Trigger: AGTGTGGTCGTTGGTTAACAACTTTACTAGTTTCCATCCAGGCTTAACCTTTCTATGGACCATAATGTCTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS TCA 72 bp | GCCTCTATATCTAAAGGTGAATATGCACATATTCTATaGACCAGTAATTCCACCCCATTACATACCCATCAC | + |
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Preference number: 6 (lower is better) Translates to: ASISKGEYAHIL*TSNSTPLHTHH Trigger: GTGATGGGTATGTAATGGGGTGGAATTACTGGTTCATAGAATATGTGCATATTCACCTTTAGATATAGAGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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| CDS GCA 72 bp | AACTTAAGTATCCTTAAAACAGGGAGGGACAATAAATaGAGCAGACACCAAGACATTATGGTCCATAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: NLSILKTGRDNK*SRHQDIMVHRK Trigger: CTTTCTATGGACCATAATGTCTTGGTGTCTGCTGCATTTATTGTCCCTCCCTGTTTTAAGGATACTTAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CCA 72 bp | AAAAGTTATGTGACCAGATTGTACCTTAATTGTGGGTaGGATATTCAGAAGCTGCTAAGTATGAATGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: KSYVTRLYLNCG*DIQKLLSMNVL Trigger: GAGCACATTCATACTTAGCAGCTTCTGAATATCCCACCCACAATTAAGGTACAATCTGGTCACATAACTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS CAA 72 bp | CATGCAACAATACAGATGAGTTGTATAGACATACTGTaGAGTCAAAGAAGCCAGACACAAGAGTGCATATTA | + |
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Preference number: 6 (lower is better) Translates to: HATIQMSCIDIL*SQRSQTQECIL Trigger: TAATATGCACTCTTGTGTCTGGCTTCTTTGACTCAACAGTATGTCTATACAACTCATCTGTATTGTTGCATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555379.1 |
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| CDS GCA 72 bp | TTATCCCAAACTGAAAATAATCCAAACGTCTTTCAGTaGTGTTGGAGCTTATTAAAGTCAATTACAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LSQTENNPNVFQ*CWSLLKSITAQ Trigger: CTGAGCTGTAATTGACTTTAATAAGCTCCAACAGCACTGAAAGACGTTTGGATTATTTTCAGTTTGGGATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000555379.1 ENST00000555688.1 |
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