Pregenerated sensors for LINC00628 (Homo sapiens)
Ensembl gene IDs: ENSG00000280924Ensembl transcript IDs: ENST00000628516.1
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGCCTGGGCAACACCAAGAGTGCTTATATTCCCATCCAGGCGGAGTaGCCGCTGAGGCAGCTGCCCTCGCGGCAAGCTCCGGGGGCATCT | + |
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Preference number: 5 (lower is better) Translates to: CLGNTKSAYIPIQAE*PLRQLPSRQAPGAS Trigger: AGATGCCCCCGGAGCTTGCCGCGAGGGCAGCTGCCTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS TCA 90 bp | GCAACACCAAGAGTGCTTATATTCCCATCCAGGCGGAGTGCCCGCTaGGGCAGCTGCCCTCGCGGCAAGCTCCGGGGGCATCTTAACCCC | + |
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Preference number: 5 (lower is better) Translates to: ATPRVLIFPSRRSAR*GSCPRGKLRGHLNP Trigger: GGGGTTAAGATGCCCCCGGAGCTTGCCGCGAGGGCAGCTGCCTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 90 bp | CAACTTCCCTCCACACTGCCCTCTCTGCCTGGGCAACACCAAGAGTaGTTATATTCCCATCCAGGCGGAGTGCCCGCTGAGGCAGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: QLPSTLPSLPGQHQE*LYSHPGGVPAEAAA Trigger: GGCAGCTGCCTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCAGAGAGGGCAGTGTGGAGGGAAGTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CCA 90 bp | CCTCTGTCTCTGTGGGAGGACGTTGCCATTCAGGAGGGCGTGGGTTaGCAGTCTCCCCAAGTAGAGGGATCCCCATTGGGTCAGAATCAT | + |
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Preference number: 5 (lower is better) Translates to: PLSLWEDVAIQEGVG*QSPQVEGSPLGQNH Trigger: ATGATTCTGACCCAATGGGGATCCCTCTACTTGGGGAGACTGCCAACCCACGCCCTCCTGAATGGCAACGTCCTCCCACAGAGACAGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CCA 90 bp | AGACCCAAGAGAGTCCACTGTCAGAGGTGGGGACAGTCAGGGAGCTaGCTGAGAACATTCCTTTTGGGAGTGCGAGCCTCCTGGCTGACA | + |
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Preference number: 5 (lower is better) Translates to: RPKRVHCQRWGQSGS*LRTFLLGVRASWLT Trigger: TGTCAGCCAGGAGGCTCGCACTCCCAAAAGGAATGTTCTCAGCCAGCTCCCTGACTGTCCCCACCTCTGACAGTGGACTCTCTTGGGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 90 bp | CTCCATAAATGCTACTTGTTCCCCTCTGTCTCTGTGGGAGGACGTTaGCATTCAGGAGGGCGTGGGTTGGCAGTCTCCCCAAGTAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: LHKCYLFPSVSVGGR*HSGGRGLAVSPSRG Trigger: CCCTCTACTTGGGGAGACTGCCAACCCACGCCCTCCTGAATGGCAACGTCCTCCCACAGAGACAGAGGGGAACAAGTAGCATTTATGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CCA 90 bp | CCCTGCCTTTTTCTAGCAACTTCCCTCCACACTGCCCTCTCTGCCTaGGCAACACCAAGAGTGCTTATATTCCCATCCAGGCGGAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: PCLFLATSLHTALSA*ATPRVLIFPSRRSA Trigger: GGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCAGAGAGGGCAGTGTGGAGGGAAGTTGCTAGAAAAAGGCAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS TCA 90 bp | GCGAGCCTCCTGGCTGACATATTGGAAAACAGGTGGGGATTCTCTTaGTGGACAGTGACTGCCACCTTTCTGGTCAGTCCACACGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: ASLLADILENRWGFS*WTVTATFLVSPHAC Trigger: GCAGGCGTGTGGACTGACCAGAAAGGTGGCAGTCACTGTCCATCAAGAGAATCCCCACCTGTTTTCCAATATGTCAGCCAGGAGGCTCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS TCA 90 bp | AATGCTCAGAGGAGAATCACAGAATCTCAGTGTGAGCAAGGAAGTTaGCAGTGGCCAGGAGGCACCCAGGCAGTCCCCACAGGTGGCCAT | + |
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Preference number: 5 (lower is better) Translates to: NAQRRITESQCEQGS*QWPGGTQAVPTGGH Trigger: ATGGCCACCTGTGGGGACTGCCTGGGTGCCTCCTGGCCACTGTCAACTTCCTTGCTCACACTGAGATTCTGTGATTCTCCTCTGAGCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 90 bp | TGTCCCCTGCCTTTTTCTAGCAACTTCCCTCCACACTGCCCTCTCTaGCTGGGCAACACCAAGAGTGCTTATATTCCCATCCAGGCGGAG | + |
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Preference number: 5 (lower is better) Translates to: CPLPFSSNFPPHCPL*LGNTKSAYIPIQAE Trigger: CTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCAGAGAGGGCAGTGTGGAGGGAAGTTGCTAGAAAAAGGCAGGGGACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 90 bp | TATGGATTATGTCCCCTGCCTTTTTCTAGCAACTTCCCTCCACACTaGCCTCTCTGCCTGGGCAACACCAAGAGTGCTTATATTCCCATC | + |
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Preference number: 5 (lower is better) Translates to: YGLCPLPFSSNFPPH*PLCLGNTKSAYIPI Trigger: GATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCAGAGAGGGCAGTGTGGAGGGAAGTTGCTAGAAAAAGGCAGGGGACATAATCCATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS TCA 72 bp | AGAGTGCTTATATTCCCATCCAGGCGGAGTGCCCGCTaGGGCAGCTGCCCTCGCGGCAAGCTCCGGGGGCAT | + |
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Preference number: 6 (lower is better) Translates to: RVLIFPSRRSAR*GSCPRGKLRGH Trigger: ATGCCCCCGGAGCTTGCCGCGAGGGCAGCTGCCTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 72 bp | AACACCAAGAGTGCTTATATTCCCATCCAGGCGGAGTaGCCGCTGAGGCAGCTGCCCTCGCGGCAAGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: NTKSAYIPIQAE*PLRQLPSRQAP Trigger: CGGAGCTTGCCGCGAGGGCAGCTGCCTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CCA 72 bp | CTGTGGGAGGACGTTGCCATTCAGGAGGGCGTGGGTTaGCAGTCTCCCCAAGTAGAGGGATCCCCATTGGGT | + |
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Preference number: 6 (lower is better) Translates to: LWEDVAIQEGVG*QSPQVEGSPLG Trigger: ACCCAATGGGGATCCCTCTACTTGGGGAGACTGCCAACCCACGCCCTCCTGAATGGCAACGTCCTCCCACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 72 bp | TCCACACTGCCCTCTCTGCCTGGGCAACACCAAGAGTaGTTATATTCCCATCCAGGCGGAGTGCCCGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: STLPSLPGQHQE*LYSHPGGVPAE Trigger: CTCAGCGGGCACTCCGCCTGGATGGGAATATAAGCACTCTTGGTGTTGCCCAGGCAGAGAGGGCAGTGTGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 72 bp | TGCTACTTGTTCCCCTCTGTCTCTGTGGGAGGACGTTaGCATTCAGGAGGGCGTGGGTTGGCAGTCTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: CYLFPSVSVGGR*HSGGRGLAVSP Trigger: TGGGGAGACTGCCAACCCACGCCCTCCTGAATGGCAACGTCCTCCCACAGAGACAGAGGGGAACAAGTAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 72 bp | ACTGCTGGTCTGACTGTCTCCTGCCATGTTAGCAGCTaGTTTGAGGCACCAGCTGCTGGGGAGCAGTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: TAGLTVSCHVSS*FEAPAAGEQCL Trigger: CAGGCACTGCTCCCCAGCAGCTGGTGCCTCAAAGCAGCTGCTAACATGGCAGGAGACAGTCAGACCAGCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CAA 72 bp | ATGCTACTTGTTCCCCTCTGTCTCTGTGGGAGGACGTaGCCATTCAGGAGGGCGTGGGTTGGCAGTCTCCCC | + |
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Preference number: 6 (lower is better) Translates to: MLLVPLCLCGRT*PFRRAWVGSLP Trigger: GGGGAGACTGCCAACCCACGCCCTCCTGAATGGCAACGTCCTCCCACAGAGACAGAGGGGAACAAGTAGCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 72 bp | GGAAAACAGGTGGGGATTCTCTTGATGGACAGTGACTaGCACCTTTCTGGTCAGTCCACACGCCTGCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: GKQVGILLMDSD*HLSGQSTRLPC Trigger: ACAAGGCAGGCGTGTGGACTGACCAGAAAGGTGGCAGTCACTGTCCATCAAGAGAATCCCCACCTGTTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CAA 72 bp | TGGGGACAGTCAGGGAGCTGGCTGAGAACATTCCTTTaGGGAGTGCGAGCCTCCTGGCTGACATATTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: WGQSGSWLRTFL*GVRASWLTYWK Trigger: TTTCCAATATGTCAGCCAGGAGGCTCGCACTCCCAAAAGGAATGTTCTCAGCCAGCTCCCTGACTGTCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS TCA 72 bp | CACCTTTCTGGTCAGTCCACACGCCTGCCTTGTGTATaGAGTCTTACGAAGCATAGCTATTCACTGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: HLSGQSTRLPCV*SLTKHSYSLLV Trigger: GACCAGCAGTGAATAGCTATGCTTCGTAAGACTTCATACACAAGGCAGGCGTGTGGACTGACCAGAAAGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 72 bp | ACAGTGACTGCCACCTTTCTGGTCAGTCCACACGCCTaGCTTGTGTATGAAGTCTTACGAAGCATAGCTATT | + |
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Preference number: 6 (lower is better) Translates to: TVTATFLVSPHA*LVYEVLRSIAI Trigger: AATAGCTATGCTTCGTAAGACTTCATACACAAGGCAGGCGTGTGGACTGACCAGAAAGGTGGCAGTCACTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS GCA 72 bp | TGGGTCAGAATCATAAATAATTCTGCCACTGTGATGTaGCTGGGAAAGAGGCCAGTATGGATTATGTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: WVRIINNSATVM*LGKRPVWIMSP Trigger: AGGGGACATAATCCATACTGGCCTCTTTCCCAGGCACATCACAGTGGCAGAATTATTTATGATTCTGACCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CAA 90 bp | TTCATTTTATTCACCTGTATTTATCAAGGGTCTATATTTCCACAGTaGCTGCTGATGGTGATGCTGCTGTTTCAGCAAAACAGGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: FILFTCIYQGSIFPQ*LLMVMLLFQQNRAA Trigger: GGCTGCCCTGTTTTGCTGAAACAGCAGCATCACCATCAGCAGCAACTGTGGAAATATAGACCCTTGATAAATACAGGTGAATAAAATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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| CDS CAA 72 bp | TTCACCTGTATTTATCAAGGGTCTATATTTCCACAGTaGCTGCTGATGGTGATGCTGCTGTTTCAGCAAAAC | + |
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Preference number: 6 (lower is better) Translates to: FTCIYQGSIFPQ*LLMVMLLFQQN Trigger: GTTTTGCTGAAACAGCAGCATCACCATCAGCAGCAACTGTGGAAATATAGACCCTTGATAAATACAGGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000628516.1 |
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