Pregenerated sensors for LINC00622 (Homo sapiens)
Ensembl gene IDs: ENSG00000260941Ensembl transcript IDs: ENST00000562811.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CATTCGTTTCAAGTGTTTATGGGATGTTCACCAACACAGACCTTTTaGTGCACCATAAAACAAGTCTCAATATATACACAAGGATCAAAA | + |
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Preference number: 5 (lower is better) Translates to: HSFQVFMGCSPTQTF*CTIKQVSIYTQGSK Trigger: TTTTGATCCTTGTGTATATATTGAGACTTGTTTTATGGTGCAGCAAAAGGTCTGTGTTGGTGAACATCCCATAAACACTTGAAACGAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000562811.1 |
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| CDS CCA 72 bp | CCAACAACTGCAGAAAGCATTCGTTTCAAGTGTTTATaGGATGTTCACCAACACAGACCTTTTGCTGCACCA | + |
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Preference number: 6 (lower is better) Translates to: PTTAESIRFKCL*DVHQHRPFAAP Trigger: TGGTGCAGCAAAAGGTCTGTGTTGGTGAACATCCCATAAACACTTGAAACGAATGCTTTCTGCAGTTGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562811.1 |
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| CDS TCA 72 bp | CATCAGTCAGCAGGGACATGCAAATCAAAACTACAGTaGGACACCACTTCTTACCCACTAGAATGCTATAAT | + |
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Preference number: 6 (lower is better) Translates to: HQSAGTCKSKLQ*DTTSYPLECYN Trigger: ATTATAGCATTCTAGTGGGTAAGAAGTGGTGTCTCACTGTAGTTTTGATTTGCATGTCCCTGCTGACTGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562811.1 |
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| CDS GCA 72 bp | GAAAAACTAAAACACTCACGCATTGTTGATGGGACATaGAGTCACGTTGGAAACCAGTTTGGCAGTATCTTA | + |
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Preference number: 6 (lower is better) Translates to: EKLKHSRIVDGT*SHVGNQFGSIL Trigger: TAAGATACTGCCAAACTGGTTTCCAACGTGACTGCATGTCCCATCAACAATGCGTGAGTGTTTTAGTTTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000562811.1 |
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| CDS CAA 72 bp | TCAAGTGTTTATGGGATGTTCACCAACACAGACCTTTaGCTGCACCATAAAACAAGTCTCAATATATACACA | + |
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Preference number: 6 (lower is better) Translates to: SSVYGMFTNTDL*LHHKTSLNIYT Trigger: TGTGTATATATTGAGACTTGTTTTATGGTGCAGCAAAAGGTCTGTGTTGGTGAACATCCCATAAACACTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000562811.1 |
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