Pregenerated sensors for LINC00615 (Homo sapiens)
Ensembl gene IDs: ENSG00000196243Ensembl transcript IDs: ENST00000546725.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GTGGAGCAACATGCTGTTTTAACGAACGCCTGGCTGCAGGCGGGCTaGGGCCTAAGATGGCGTCAGCCCCAAGTGAGGACAGGACAGGGG | + |
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Preference number: 5 (lower is better) Translates to: VEQHAVLTNAWLQAG*GLRWRQPQVRTGQG Trigger: CCCCTGTCCTGTCCTCACTTGGGGCTGACGCCATCTTAGGCCTCAGCCCGCCTGCAGCCAGGCGTTCGTTAAAACAGCATGTTGCTCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 90 bp | CTCCTCAGAGGTATTTGGTTCCTAGGAATCTGCCGGAGCGTGCATTaGTTCTTCTCTCATGCTCATGGGAACTATGCAAAAAGGAACGCC | + |
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Preference number: 5 (lower is better) Translates to: LLRGIWFLGICRSVH*FFSHAHGNYAKRNA Trigger: GGCGTTCCTTTTTGCATAGTTCCCATGAGCATGAGAGAAGAAGCAATGCACGCTCCGGCAGATTCCTAGGAACCAAATACCTCTGAGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS TCA 90 bp | AAGGCTTTAACTGTCAAGAGATGTGAGGCTGGCAGTGATGACGCATaGCTGCAGCTTCCTTCTCCTAAATGCAGCCACAGAGCAATCAAA | + |
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Preference number: 5 (lower is better) Translates to: KALTVKRCEAGSDDA*LQLPSPKCSHRAIK Trigger: TTTGATTGCTCTGTGGCTGCATTTAGGAGAAGGAAGCTGCAGTCATGCGTCATCACTGCCAGCCTCACATCTCTTGACAGTTAAAGCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 90 bp | GCACACAAATGTCAAGAGTGTGATATGCAAGGTGTAATTCACCCTTaGCAGGCCACTGGGCTGGAATCAGTCATCCTAGAGTATAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: AHKCQECDMQGVIHP*QATGLESVILEYKC Trigger: GCACTTATACTCTAGGATGACTGATTCCAGCCCAGTGGCCTGGCAAGGGTGAATTACACCTTGCATATCACACTCTTGACATTTGTGTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 90 bp | CCTTGCCAGGCCACTGGGCTGGAATCAGTCATCCTAGAGTATAAGTaGTTTTTGTGGTCAGGAGGAATTAGAAGAGAGTTATTTGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: PCQATGLESVILEYK*FLWSGGIRRELFGG Trigger: TCCTCCAAATAACTCTCTTCTAATTCCTCCTGACCACAAAAAGCACTTATACTCTAGGATGACTGATTCCAGCCCAGTGGCCTGGCAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS TCA 90 bp | TGGTCAGGAGGAATTAGAAGAGAGTTATTTGGAGGATCAAGACACTaGAGAATATACTGCTTGAAAGGTGCTTGTATTGGTTCGAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: WSGGIRRELFGGSRH*RIYCLKGACIGSSP Trigger: TGGGCTCGAACCAATACAAGCACCTTTCAAGCAGTATATTCTTCAGTGTCTTGATCCTCCAAATAACTCTCTTCTAATTCCTCCTGACCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 90 bp | GTTATTTGGAGGATCAAGACACTGAAGAATATACTGCTTGAAAGGTaGTTGTATTGGTTCGAGCCCAGAGAGTGGGACCAACAAACAATA | + |
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Preference number: 5 (lower is better) Translates to: VIWRIKTLKNILLER*LYWFEPREWDQQTI Trigger: TATTGTTTGTTGGTCCCACTCTCTGGGCTCGAACCAATACAAGCACCTTTCAAGCAGTATATTCTTCAGTGTCTTGATCCTCCAAATAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS TCA 72 bp | CATGCTGTTTTAACGAACGCCTGGCTGCAGGCGGGCTaGGGCCTAAGATGGCGTCAGCCCCAAGTGAGGACA | + |
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Preference number: 6 (lower is better) Translates to: HAVLTNAWLQAG*GLRWRQPQVRT Trigger: TGTCCTCACTTGGGGCTGACGCCATCTTAGGCCTCAGCCCGCCTGCAGCCAGGCGTTCGTTAAAACAGCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS CCA 72 bp | AGGGGTACATGTCTTCCGGCCAGGGTAGGTGTCTTCTaGCCAGGTAGATGTCTTCCGGGCAGCTCTCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: RGTCLPARVGVF*PGRCLPGSSRP Trigger: AGGACGAGAGCTGCCCGGAAGACATCTACCTGGCCAGAAGACACCTACCCTGGCCGGAAGACATGTACCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 72 bp | CTCTCGTCCTGCTTTTGCTATCTTGCTGATGCACGCTaGTGGCGCAAGTGGTCTTGCGTCTTGGGACTGGGC | + |
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Preference number: 6 (lower is better) Translates to: LSSCFCYLADAR*WRKWSCVLGLG Trigger: GCCCAGTCCCAAGACGCAAGACCACTTGCGCCAGCAGCGTGCATCAGCAAGATAGCAAAAGCAGGACGAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS TCA 72 bp | TTCCGGGCAGCTCTCGTCCTGCTTTTGCTATCTTGCTaGTGCACGCTGCTGGCGCAAGTGGTCTTGCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: FRAALVLLLLSC*CTLLAQVVLRL Trigger: AAGACGCAAGACCACTTGCGCCAGCAGCGTGCATCAGCAAGATAGCAAAAGCAGGACGAGAGCTGCCCGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 72 bp | CTGGTGCTCCTCAGAGGTATTTGGTTCCTAGGAATCTaGCGGAGCGTGCATTGCTTCTTCTCTCATGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LVLLRGIWFLGI*RSVHCFFSHAH Trigger: ATGAGCATGAGAGAAGAAGCAATGCACGCTCCGGCAGATTCCTAGGAACCAAATACCTCTGAGGAGCACCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS CAA 90 bp | GCTCCTCAGAGGTATTTGGTTCCTAGGAATCTGCCGGAGCGTGCATaGCTTCTTCTCTCATGCTCATGGGAACTATGCAAAAAGGAACGC | + |
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Preference number: 6 (lower is better) Translates to: APQRYLVPRNLPERA*LLLSCSWELCKKER Trigger: GCGTTCCTTTTTGCATAGTTCCCATGAGCATGAGAGAAGAAGCAATGCACGCTCCGGCAGATTCCTAGGAACCAAATACCTCTGAGGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 72 bp | TGTCAAGAGTGTGATATGCAAGGTGTAATTCACCCTTaGCAGGCCACTGGGCTGGAATCAGTCATCCTAGAG | + |
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Preference number: 6 (lower is better) Translates to: CQECDMQGVIHP*QATGLESVILE Trigger: CTCTAGGATGACTGATTCCAGCCCAGTGGCCTGGCAAGGGTGAATTACACCTTGCATATCACACTCTTGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS CAA 72 bp | TCCCATAAGCTGAAATCTGGTGCTCCTCAGAGGTATTaGGTTCCTAGGAATCTGCCGGAGCGTGCATTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SHKLKSGAPQRY*VPRNLPERALL Trigger: AAGCAATGCACGCTCCGGCAGATTCCTAGGAACCAAATACCTCTGAGGAGCACCAGATTTCAGCTTATGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS CAA 90 bp | ATCAAAGCATCCCATAAGCTGAAATCTGGTGCTCCTCAGAGGTATTaGGTTCCTAGGAATCTGCCGGAGCGTGCATTGCTTCTTCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: IKASHKLKSGAPQRY*VPRNLPERALLLLS Trigger: TGAGAGAAGAAGCAATGCACGCTCCGGCAGATTCCTAGGAACCAAATACCTCTGAGGAGCACCAGATTTCAGCTTATGGGATGCTTTGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 72 bp | GGTATTTGGTTCCTAGGAATCTGCCGGAGCGTGCATTaGTTCTTCTCTCATGCTCATGGGAACTATGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: GIWFLGICRSVH*FFSHAHGNYAK Trigger: TTTTGCATAGTTCCCATGAGCATGAGAGAAGAAGCAATGCACGCTCCGGCAGATTCCTAGGAACCAAATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS CAA 72 bp | AGGTATTTGGTTCCTAGGAATCTGCCGGAGCGTGCATaGCTTCTTCTCTCATGCTCATGGGAACTATGCAAA | + |
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Preference number: 6 (lower is better) Translates to: RYLVPRNLPERA*LLLSCSWELCK Trigger: TTTGCATAGTTCCCATGAGCATGAGAGAAGAAGCAATGCACGCTCCGGCAGATTCCTAGGAACCAAATACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS GCA 72 bp | GCCACTGGGCTGGAATCAGTCATCCTAGAGTATAAGTaGTTTTTGTGGTCAGGAGGAATTAGAAGAGAGTTA | + |
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Preference number: 6 (lower is better) Translates to: ATGLESVILEYK*FLWSGGIRREL Trigger: TAACTCTCTTCTAATTCCTCCTGACCACAAAAAGCACTTATACTCTAGGATGACTGATTCCAGCCCAGTGGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS CCA 72 bp | ACACTGAAGAATATACTGCTTGAAAGGTGCTTGTATTaGTTCGAGCCCAGAGAGTGGGACCAACAAACAATA | + |
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Preference number: 6 (lower is better) Translates to: TLKNILLERCLY*FEPREWDQQTI Trigger: TATTGTTTGTTGGTCCCACTCTCTGGGCTCGAACCAATACAAGCACCTTTCAAGCAGTATATTCTTCAGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS TCA 72 bp | GGAATTAGAAGAGAGTTATTTGGAGGATCAAGACACTaGAGAATATACTGCTTGAAAGGTGCTTGTATTGGT | + |
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Preference number: 6 (lower is better) Translates to: GIRRELFGGSRH*RIYCLKGACIG Trigger: ACCAATACAAGCACCTTTCAAGCAGTATATTCTTCAGTGTCTTGATCCTCCAAATAACTCTCTTCTAATTCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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| CDS CAA 72 bp | TCAAAGGAAATTGTTTCGAGACCCAAGTCCTCAATTTaGTTAAAAGCTGTAGGTACACTGTGTTACTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: SKEIVSRPKSSI*LKAVGTLCYLN Trigger: GTTCAAGTAACACAGTGTACCTACAGCTTTTAACAAAATTGAGGACTTGGGTCTCGAAACAATTTCCTTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546725.1 |
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