Pregenerated sensors for LINC00604 (Homo sapiens)
Ensembl gene IDs: ENSG00000250585Ensembl transcript IDs: ENST00000508437.1, ENST00000637924.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | CAGACATCCCAAGCTGCTGGAGACTTGACTGAGGACCAGGCAGGATaGATGATCTGTGCCAGGAGGCAACATCTTCTTTTCGCATGGCCT | + |
Preference number: 5 (lower is better) Translates to: QTSQAAGDLTEDQAG*MICARRQHLLFAWP Trigger: AGGCCATGCGAAAAGAAGATGTTGCCTCCTGGCACAGATCATTCATCCTGCCTGGTCCTCAGTCAAGTCTCCAGCAGCTTGGGATGTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000508437.1 ENST00000637924.2 |
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CDS GCA 90 bp | TCATCTGAAGTCATGACTGGGGAGGGTCACTTCCAAGATGACTCATaGAGTTCTTGGCAGGAGGTTTTTGTTTCTGGCTACATGGGCCTG | + |
Preference number: 5 (lower is better) Translates to: SSEVMTGEGHFQDDS*SSWQEVFVSGYMGL Trigger: CAGGCCCATGTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGACTTCAGATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000637924.2 |
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CDS CCA 90 bp | GTCATGACTGGGGAGGGTCACTTCCAAGATGACTCATGCAGTTCTTaGCAGGAGGTTTTTGTTTCTGGCTACATGGGCCTGATCATAGAA | + |
Preference number: 5 (lower is better) Translates to: VMTGEGHFQDDSCSS*QEVFVSGYMGLIIE Trigger: TTCTATGATCAGGCCCATGTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000637924.2 |
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CDS TCA 72 bp | CATTCTTCAGACATCCCAAGCTGCTGGAGACTTGACTaGGGACCAGGCAGGATGAATGATCTGTGCCAGGAG | + |
Preference number: 6 (lower is better) Translates to: HSSDIPSCWRLD*GPGRMNDLCQE Trigger: CTCCTGGCACAGATCATTCATCCTGCCTGGTCCTCAGTCAAGTCTCCAGCAGCTTGGGATGTCTGAAGAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000508437.1 ENST00000637924.2 |
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CDS TCA 72 bp | AGACTGCCAGCAGGGTTGCAGTGTCATCTGAAGTCATaGCTGGGGAGGGTCACTTCCAAGATGACTCATGCA | + |
Preference number: 6 (lower is better) Translates to: RLPAGLQCHLKS*LGRVTSKMTHA Trigger: TGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGACTTCAGATGACACTGCAACCCTGCTGGCAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000637924.2 |
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CDS CCA 72 bp | GGGGAGGGTCACTTCCAAGATGACTCATGCAGTTCTTaGCAGGAGGTTTTTGTTTCTGGCTACATGGGCCTG | + |
Preference number: 6 (lower is better) Translates to: GEGHFQDDSCSS*QEVFVSGYMGL Trigger: CAGGCCCATGTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000637924.2 |
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CDS TCA 72 bp | GCGACAGAGCGAGACTCTGTCATGTTGCAGTTTTTGTaGGTCAAGAATCTGGCAGCAGTTCAGCTACGTGGT | + |
Preference number: 6 (lower is better) Translates to: ATERDSVMLQFL*VKNLAAVQLRG Trigger: ACCACGTAGCTGAACTGCTGCCAGATTCTTGACTCACAAAAACTGCAACATGACAGAGTCTCGCTCTGTCGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000637924.2 |
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CDS GCA 72 bp | GTCATGACTGGGGAGGGTCACTTCCAAGATGACTCATaGAGTTCTTGGCAGGAGGTTTTTGTTTCTGGCTAC | + |
Preference number: 6 (lower is better) Translates to: VMTGEGHFQDDS*SSWQEVFVSGY Trigger: GTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000637924.2 |
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CDS CCA 72 bp | ATCATAGAACTACTCATGACACAGCTTCCCCCAGAGTaGGTGATCCAAGGGCAAGAAGGTGCTCATCTAAAT | + |
Preference number: 6 (lower is better) Translates to: IIELLMTQLPPE*VIQGQEGAHLN Trigger: ATTTAGATGAGCACCTTCTTGCCCTTGGATCACCCACTCTGGGGGAAGCTGTGTCATGAGTAGTTCTATGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000637924.2 |
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CDS CAA 72 bp | CCCACTTATAGAATGTATGTTGGGCATCCCCGGGCCTaGTCTCTTAGGCTTTTCATTCTTCAGACATCCCAA | + |
Preference number: 6 (lower is better) Translates to: PTYRMYVGHPRA*SLRLFILQTSQ Trigger: TTGGGATGTCTGAAGAATGAAAAGCCTAAGAGACAAGGCCCGGGGATGCCCAACATACATTCTATAAGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000508437.1 ENST00000637924.2 |