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Pregenerated sensors for LINC00604 (Homo sapiens)

Ensembl gene IDs: ENSG00000250585

Ensembl transcript IDs: ENST00000508437.1, ENST00000637924.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CAGACATCCCAAGCTGCTGGAGACTTGACTGAGGACCAGGCAGGATaGATGATCTGTGCCAGGAGGCAACATCTTCTTTTCGCATGGCCT +
Preference number: 5 (lower is better)
Translates to: QTSQAAGDLTEDQAG*MICARRQHLLFAWP
Trigger: AGGCCATGCGAAAAGAAGATGTTGCCTCCTGGCACAGATCATTCATCCTGCCTGGTCCTCAGTCAAGTCTCCAGCAGCTTGGGATGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000508437.1
ENST00000637924.2
CDS GCA 90 bp TCATCTGAAGTCATGACTGGGGAGGGTCACTTCCAAGATGACTCATaGAGTTCTTGGCAGGAGGTTTTTGTTTCTGGCTACATGGGCCTG +
Preference number: 5 (lower is better)
Translates to: SSEVMTGEGHFQDDS*SSWQEVFVSGYMGL
Trigger: CAGGCCCATGTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGACTTCAGATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000637924.2
CDS CCA 90 bp GTCATGACTGGGGAGGGTCACTTCCAAGATGACTCATGCAGTTCTTaGCAGGAGGTTTTTGTTTCTGGCTACATGGGCCTGATCATAGAA +
Preference number: 5 (lower is better)
Translates to: VMTGEGHFQDDSCSS*QEVFVSGYMGLIIE
Trigger: TTCTATGATCAGGCCCATGTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000637924.2
CDS TCA 72 bp CATTCTTCAGACATCCCAAGCTGCTGGAGACTTGACTaGGGACCAGGCAGGATGAATGATCTGTGCCAGGAG +
Preference number: 6 (lower is better)
Translates to: HSSDIPSCWRLD*GPGRMNDLCQE
Trigger: CTCCTGGCACAGATCATTCATCCTGCCTGGTCCTCAGTCAAGTCTCCAGCAGCTTGGGATGTCTGAAGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000508437.1
ENST00000637924.2
CDS TCA 72 bp AGACTGCCAGCAGGGTTGCAGTGTCATCTGAAGTCATaGCTGGGGAGGGTCACTTCCAAGATGACTCATGCA +
Preference number: 6 (lower is better)
Translates to: RLPAGLQCHLKS*LGRVTSKMTHA
Trigger: TGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGACTTCAGATGACACTGCAACCCTGCTGGCAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000637924.2
CDS CCA 72 bp GGGGAGGGTCACTTCCAAGATGACTCATGCAGTTCTTaGCAGGAGGTTTTTGTTTCTGGCTACATGGGCCTG +
Preference number: 6 (lower is better)
Translates to: GEGHFQDDSCSS*QEVFVSGYMGL
Trigger: CAGGCCCATGTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000637924.2
CDS TCA 72 bp GCGACAGAGCGAGACTCTGTCATGTTGCAGTTTTTGTaGGTCAAGAATCTGGCAGCAGTTCAGCTACGTGGT +
Preference number: 6 (lower is better)
Translates to: ATERDSVMLQFL*VKNLAAVQLRG
Trigger: ACCACGTAGCTGAACTGCTGCCAGATTCTTGACTCACAAAAACTGCAACATGACAGAGTCTCGCTCTGTCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000637924.2
CDS GCA 72 bp GTCATGACTGGGGAGGGTCACTTCCAAGATGACTCATaGAGTTCTTGGCAGGAGGTTTTTGTTTCTGGCTAC +
Preference number: 6 (lower is better)
Translates to: VMTGEGHFQDDS*SSWQEVFVSGY
Trigger: GTAGCCAGAAACAAAAACCTCCTGCCAAGAACTGCATGAGTCATCTTGGAAGTGACCCTCCCCAGTCATGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000637924.2
CDS CCA 72 bp ATCATAGAACTACTCATGACACAGCTTCCCCCAGAGTaGGTGATCCAAGGGCAAGAAGGTGCTCATCTAAAT +
Preference number: 6 (lower is better)
Translates to: IIELLMTQLPPE*VIQGQEGAHLN
Trigger: ATTTAGATGAGCACCTTCTTGCCCTTGGATCACCCACTCTGGGGGAAGCTGTGTCATGAGTAGTTCTATGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000637924.2
CDS CAA 72 bp CCCACTTATAGAATGTATGTTGGGCATCCCCGGGCCTaGTCTCTTAGGCTTTTCATTCTTCAGACATCCCAA +
Preference number: 6 (lower is better)
Translates to: PTYRMYVGHPRA*SLRLFILQTSQ
Trigger: TTGGGATGTCTGAAGAATGAAAAGCCTAAGAGACAAGGCCCGGGGATGCCCAACATACATTCTATAAGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000508437.1
ENST00000637924.2