Pregenerated sensors for LINC00603 (Homo sapiens)
Ensembl gene IDs: ENSG00000250048Ensembl transcript IDs: ENST00000507027.2, ENST00000638070.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CATCAGGTGCCCAGACTGCAATCGCGAAGGAAGAATTGTTTGCCTTaGGGCTTATCATACTTCCCACAAGGGCAGGGCTTGGTGTCAGAG | + |
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Preference number: 5 (lower is better) Translates to: HQVPRLQSRRKNCLP*GLSYFPQGQGLVSE Trigger: CTCTGACACCAAGCCCTGCCCTTGTGGGAAGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS GCA 90 bp | TATATCATCAGGTGCCCAGACTGCAATCGCGAAGGAAGAATTGTTTaGCTTGAGGCTTATCATACTTCCCACAAGGGCAGGGCTTGGTGT | + |
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Preference number: 5 (lower is better) Translates to: YIIRCPDCNREGRIV*LEAYHTSHKGRAWC Trigger: ACACCAAGCCCTGCCCTTGTGGGAAGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATGATATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS GCA 90 bp | CAGCAGAGCATCTCAGATTTTCTCTCACCAACCTCACCATCTAGTTaGTACAGTTTGTCTTCCATAGACCTTGTTTGTTCACCCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: QQSISDFLSPTSPSS*YSLSSIDLVCSPCS Trigger: GGAGCAGGGTGAACAAACAAGGTCTATGGAAGACAAACTGTAGCAACTAGATGGTGAGGTTGGTGAGAGAAAATCTGAGATGCTCTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507027.2 |
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| CDS GCA 90 bp | AGGCAGGAGTCCAATGAGTCATTCTATATCATCAGGTGCCCAGACTaGAATCGCGAAGGAAGAATTGTTTGCCTTGAGGCTTATCATACT | + |
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Preference number: 5 (lower is better) Translates to: RQESNESFYIIRCPD*NREGRIVCLEAYHT Trigger: AGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATGATATAGAATGACTCATTGGACTCCTGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS TCA 90 bp | TTTATTGCTACCAATTCACAGTCCTTACAGCAACAGCAAGTTAGATaGTCTGATGAGGATTACTTTGTTTCCACACAGGAGTATAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: FIATNSQSLQQQQVR*SDEDYFVSTQEYSV Trigger: CACACTATACTCCTGTGTGGAAACAAAGTAATCCTCATCAGATCATCTAACTTGCTGTTGCTGTAAGGACTGTGAATTGGTAGCAATAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS CAA 90 bp | TCATCAGGTGCCCAGACTGCAATCGCGAAGGAAGAATTGTTTGCCTaGAGGCTTATCATACTTCCCACAAGGGCAGGGCTTGGTGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSGAQTAIAKEELFA*RLIILPTRAGLGVR Trigger: TCTGACACCAAGCCCTGCCCTTGTGGGAAGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS TCA 72 bp | CCCAGACTGCAATCGCGAAGGAAGAATTGTTTGCCTTaGGGCTTATCATACTTCCCACAAGGGCAGGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: PRLQSRRKNCLP*GLSYFPQGQGL Trigger: CAAGCCCTGCCCTTGTGGGAAGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS CAA 72 bp | GCCCAGACTGCAATCGCGAAGGAAGAATTGTTTGCCTaGAGGCTTATCATACTTCCCACAAGGGCAGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: AQTAIAKEELFA*RLIILPTRAGL Trigger: AAGCCCTGCCCTTGTGGGAAGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS CAA 72 bp | TCATCAGGTGCCCAGACTGCAATCGCGAAGGAAGAATaGTTTGCCTTGAGGCTTATCATACTTCCCACAAGG | + |
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Preference number: 6 (lower is better) Translates to: SSGAQTAIAKEE*FALRLIILPTR Trigger: CCTTGTGGGAAGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS CAA 90 bp | CATTCTATATCATCAGGTGCCCAGACTGCAATCGCGAAGGAAGAATaGTTTGCCTTGAGGCTTATCATACTTCCCACAAGGGCAGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: HSISSGAQTAIAKEE*FALRLIILPTRAGL Trigger: AAGCCCTGCCCTTGTGGGAAGTATGATAAGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATGATATAGAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS GCA 72 bp | AGGCAGGAGTCCAATGAGTCATTCTATATCATCAGGTaGCCAGACTGCAATCGCGAAGGAAGAATTGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: RQESNESFYIIR*PDCNREGRIVC Trigger: GCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATGATATAGAATGACTCATTGGACTCCTGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS GCA 72 bp | TCCAATGAGTCATTCTATATCATCAGGTGCCCAGACTaGAATCGCGAAGGAAGAATTGTTTGCCTTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: SNESFYIIRCPD*NREGRIVCLEA Trigger: AGCCTCAAGGCAAACAATTCTTCCTTCGCGATTGCAGTCTGGGCACCTGATGATATAGAATGACTCATTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS CAA 72 bp | TTTCTCTCACCAACCTCACCATCTAGTTGCTACAGTTaGTCTTCCATAGACCTTGTTTGTTCACCCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FLSPTSPSSCYS*SSIDLVCSPCS Trigger: GGAGCAGGGTGAACAAACAAGGTCTATGGAAGACAAACTGTAGCAACTAGATGGTGAGGTTGGTGAGAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000507027.2 |
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| CDS CAA 90 bp | ATCTCAGATTTTCTCTCACCAACCTCACCATCTAGTTGCTACAGTTaGTCTTCCATAGACCTTGTTTGTTCACCCTGCTCCCAAGTGAAA | + |
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Preference number: 6 (lower is better) Translates to: ISDFLSPTSPSSCYS*SSIDLVCSPCSQVK Trigger: TTTCACTTGGGAGCAGGGTGAACAAACAAGGTCTATGGAAGACAAACTGTAGCAACTAGATGGTGAGGTTGGTGAGAGAAAATCTGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507027.2 |
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| CDS TCA 72 bp | ACCAATTCACAGTCCTTACAGCAACAGCAAGTTAGATaGTCTGATGAGGATTACTTTGTTTCCACACAGGAG | + |
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Preference number: 6 (lower is better) Translates to: TNSQSLQQQQVR*SDEDYFVSTQE Trigger: CTCCTGTGTGGAAACAAAGTAATCCTCATCAGATCATCTAACTTGCTGTTGCTGTAAGGACTGTGAATTGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS GCA 72 bp | TGGTGTTTTCCCTCCTATTTCCCATGGCTTATTTATTaGTACCAATTCACAGTCCTTACAGCAACAGCAAGT | + |
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Preference number: 6 (lower is better) Translates to: WCFPSYFPWLIY*YQFTVLTATAS Trigger: ACTTGCTGTTGCTGTAAGGACTGTGAATTGGTAGCAATAAATAAGCCATGGGAAATAGGAGGGAAAACACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS CCA 72 bp | CTTGAGGCTTATCATACTTCCCACAAGGGCAGGGCTTaGTGTCAGAGTGTAATCTTATCATTTTCTATTATG | + |
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Preference number: 6 (lower is better) Translates to: LEAYHTSHKGRA*CQSVILSFSIM Trigger: CATAATAGAAAATGATAAGATTACACTCTGACACCAAGCCCTGCCCTTGTGGGAAGTATGATAAGCCTCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000638070.1 |
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| CDS CAA 72 bp | AGCAACAGCAAGTTAGATGATCTGATGAGGATTACTTaGTTTCCACACAGGAGTATAGTGTGTACTGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SNSKLDDLMRIT*FPHRSIVCTAS Trigger: GGAAGCAGTACACACTATACTCCTGTGTGGAAACAAAGTAATCCTCATCAGATCATCTAACTTGCTGTTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000507027.2 ENST00000638070.1 |
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| CDS CAA 90 bp | AGAGAGTTAAGTTTCCACGCTGGCCCACGGAAAGCATTTGGAAAATaGTTGTTCTCTTATCTTGATTACATAGGATTCCAAACTGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: RELSFHAGPRKAFGK*LFSYLDYIGFQTVC Trigger: GCACACAGTTTGGAATCCTATGTAATCAAGATAAGAGAACAACAATTTTCCAAATGCTTTCCGTGGGCCAGCGTGGAAACTTAACTCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507027.2 |
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| CDS CAA 90 bp | GAGTTAAGTTTCCACGCTGGCCCACGGAAAGCATTTGGAAAATTGTaGTTCTCTTATCTTGATTACATAGGATTCCAAACTGTGTGCATT | + |
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Preference number: 6 (lower is better) Translates to: ELSFHAGPRKAFGKL*FSYLDYIGFQTVCI Trigger: AATGCACACAGTTTGGAATCCTATGTAATCAAGATAAGAGAACAACAATTTTCCAAATGCTTTCCGTGGGCCAGCGTGGAAACTTAACTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507027.2 |
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| CDS GCA 72 bp | ATCTCAGATTTTCTCTCACCAACCTCACCATCTAGTTaGTACAGTTTGTCTTCCATAGACCTTGTTTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ISDFLSPTSPSS*YSLSSIDLVCS Trigger: TGAACAAACAAGGTCTATGGAAGACAAACTGTAGCAACTAGATGGTGAGGTTGGTGAGAGAAAATCTGAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000507027.2 |
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