Pregenerated sensors for LINC00601 (Homo sapiens)
Ensembl gene IDs: ENSG00000235180Ensembl transcript IDs: ENST00000456514.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGTTTCAGAGCTGGAGGAAGCTGTCTGGGTGAGCTGACCTCCTGTTaGGCAGCCACATCACCGTACTTTCTCTTCTCTGGTTCTGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: CFRAGGSCLGELTSC*AATSPYFLFSGSAP Trigger: AGGGGCAGAACCAGAGAAGAGAAAGTACGGTGATGTGGCTGCCCAACAGGAGGTCAGCTCACCCAGACAGCTTCCTCCAGCTCTGAAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS TCA 90 bp | CTCAGTCGATCTGTTTCAGAGCTGGAGGAAGCTGTCTGGGTGAGCTaGCCTCCTGTTGGGCAGCCACATCACCGTACTTTCTCTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: LSRSVSELEEAVWVS*PPVGQPHHRTFSSL Trigger: CAGAGAAGAGAAAGTACGGTGATGTGGCTGCCCAACAGGAGGTCAGCTCACCCAGACAGCTTCCTCCAGCTCTGAAACAGATCGACTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS GCA 90 bp | ATGTCTAGTGAGGGCATTCTCTGCTTCACAGATGGCACCTTTGGATaGATCCTTATGTGGTGGAATGGATGGGCAGCTTCCTTGCACCTC | + |
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Preference number: 5 (lower is better) Translates to: MSSEGILCFTDGTFG*ILMWWNGWAASLHL Trigger: GAGGTGCAAGGAAGCTGCCCATCCATTCCACCACATAAGGATGCATCCAAAGGTGCCATCTGTGAAGCAGAGAATGCCCTCACTAGACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CCA 90 bp | GCTTTTCTCTTGTACATCACATCTCCCATCCATGCCAACTTCATCTaGTGCTCAGTCGATCTGTTTCAGAGCTGGAGGAAGCTGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: AFLLYITSPIHANFI*CSVDLFQSWRKLSG Trigger: CCCAGACAGCTTCCTCCAGCTCTGAAACAGATCGACTGAGCACCAGATGAAGTTGGCATGGATGGGAGATGTGATGTACAAGAGAAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CCA 90 bp | ATTCTCTGCTTCACAGATGGCACCTTTGGATGCATCCTTATGTGGTaGAATGGATGGGCAGCTTCCTTGCACCTCTTTTGTAAGGACACT | + |
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Preference number: 5 (lower is better) Translates to: ILCFTDGTFGCILMW*NGWAASLHLFCKDT Trigger: AGTGTCCTTACAAAAGAGGTGCAAGGAAGCTGCCCATCCATTCCACCACATAAGGATGCATCCAAAGGTGCCATCTGTGAAGCAGAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CCA 90 bp | AAGAAGCAATGTCCTAAATGGTACTCTAGTGGCTCTCAGAGGAGCTaGCTAATTGAATTCAAACCATGTGTGAAAGCTGCCCCTTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: KKQCPKWYSSGSQRS*LIEFKPCVKAAPSR Trigger: CCTGGAAGGGGCAGCTTTCACACATGGTTTGAATTCAATTAGCCAGCTCCTCTGAGAGCCACTAGAGTACCATTTAGGACATTGCTTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS GCA 90 bp | TCAAGTAATTTTTGCTTTTCTCTTGTACATCACATCTCCCATCCATaGCAACTTCATCTGGTGCTCAGTCGATCTGTTTCAGAGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: SSNFCFSLVHHISHP*QLHLVLSRSVSELE Trigger: CTCCAGCTCTGAAACAGATCGACTGAGCACCAGATGAAGTTGGCATGGATGGGAGATGTGATGTACAAGAGAAAAGCAAAAATTACTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS GCA 90 bp | AATTTAGGTTTGACGTCTAGTTTGATGTCTAGTGAGGGCATTCTCTaGTTCACAGATGGCACCTTTGGATGCATCCTTATGTGGTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: NLGLTSSLMSSEGIL*FTDGTFGCILMWWN Trigger: ATTCCACCACATAAGGATGCATCCAAAGGTGCCATCTGTGAAGCAGAGAATGCCCTCACTAGACATCAAACTAGACGTCAAACCTAAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS GCA 72 bp | GAGGGCATTCTCTGCTTCACAGATGGCACCTTTGGATaGATCCTTATGTGGTGGAATGGATGGGCAGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: EGILCFTDGTFG*ILMWWNGWAAS Trigger: GGAAGCTGCCCATCCATTCCACCACATAAGGATGCATCCAAAGGTGCCATCTGTGAAGCAGAGAATGCCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CAA 72 bp | CTAGTGAGGGCATTCTCTGCTTCACAGATGGCACCTTaGGATGCATCCTTATGTGGTGGAATGGATGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: LVRAFSASQMAP*DASLCGGMDGQ Trigger: CTGCCCATCCATTCCACCACATAAGGATGCATCCAAAGGTGCCATCTGTGAAGCAGAGAATGCCCTCACTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS GCA 72 bp | TACATCACATCTCCCATCCATGCCAACTTCATCTGGTaGTCAGTCGATCTGTTTCAGAGCTGGAGGAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: YITSPIHANFIW*SVDLFQSWRKL Trigger: CAGCTTCCTCCAGCTCTGAAACAGATCGACTGAGCACCAGATGAAGTTGGCATGGATGGGAGATGTGATGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CCA 72 bp | TGCTTCACAGATGGCACCTTTGGATGCATCCTTATGTaGTGGAATGGATGGGCAGCTTCCTTGCACCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: CFTDGTFGCILM*WNGWAASLHLF Trigger: AAAGAGGTGCAAGGAAGCTGCCCATCCATTCCACCACATAAGGATGCATCCAAAGGTGCCATCTGTGAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS TCA 72 bp | CACATCACCGTACTTTCTCTTCTCTGGTTCTGCCCCTaGTGTGCCTCATACTCAGACCGTTGGTCATTTGAT | + |
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Preference number: 6 (lower is better) Translates to: HITVLSLLWFCP*CASYSDRWSFD Trigger: ATCAAATGACCAACGGTCTGAGTATGAGGCACATCAGGGGCAGAACCAGAGAAGAGAAAGTACGGTGATGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CCA 72 bp | TTGTACATCACATCTCCCATCCATGCCAACTTCATCTaGTGCTCAGTCGATCTGTTTCAGAGCTGGAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: LYITSPIHANFI*CSVDLFQSWRK Trigger: CTTCCTCCAGCTCTGAAACAGATCGACTGAGCACCAGATGAAGTTGGCATGGATGGGAGATGTGATGTACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CAA 72 bp | GAGGGTGGGAAGCCCAAGATCAAGGCCAATTTAGGTTaGACGTCTAGTTTGATGTCTAGTGAGGGCATTCTC | + |
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Preference number: 6 (lower is better) Translates to: EGGKPKIKANLG*TSSLMSSEGIL Trigger: GAGAATGCCCTCACTAGACATCAAACTAGACGTCAAACCTAAATTGGCCTTGATCTTGGGCTTCCCACCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CAA 90 bp | ACAGTTCTGGAGGGTGGGAAGCCCAAGATCAAGGCCAATTTAGGTTaGACGTCTAGTTTGATGTCTAGTGAGGGCATTCTCTGCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: TVLEGGKPKIKANLG*TSSLMSSEGILCFT Trigger: TGTGAAGCAGAGAATGCCCTCACTAGACATCAAACTAGACGTCAAACCTAAATTGGCCTTGATCTTGGGCTTCCCACCCTCCAGAACTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS GCA 72 bp | GCATCCTTATGTGGTGGAATGGATGGGCAGCTTCCTTaGACCTCTTTTGTAAGGACACTAATCCCATTCATG | + |
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Preference number: 6 (lower is better) Translates to: ASLCGGMDGQLP*TSFVRTLIPFM Trigger: CATGAATGGGATTAGTGTCCTTACAAAAGAGGTGCAAGGAAGCTGCCCATCCATTCCACCACATAAGGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS CAA 72 bp | TGCATCCTTATGTGGTGGAATGGATGGGCAGCTTCCTaGCACCTCTTTTGTAAGGACACTAATCCCATTCAT | + |
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Preference number: 6 (lower is better) Translates to: CILMWWNGWAAS*HLFCKDTNPIH Trigger: ATGAATGGGATTAGTGTCCTTACAAAAGAGGTGCAAGGAAGCTGCCCATCCATTCCACCACATAAGGATGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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| CDS GCA 72 bp | TTTTGCTTTTCTCTTGTACATCACATCTCCCATCCATaGCAACTTCATCTGGTGCTCAGTCGATCTGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: FCFSLVHHISHP*QLHLVLSRSVS Trigger: TGAAACAGATCGACTGAGCACCAGATGAAGTTGGCATGGATGGGAGATGTGATGTACAAGAGAAAAGCAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000456514.1 |
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