Pregenerated sensors for LINC00596 (Homo sapiens)
Ensembl gene IDs: ENSG00000259334Ensembl transcript IDs: ENST00000559615.1, ENST00000644489.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TCCAGAAAAACACATACTCTTGCTACTCGCAGTGAGCAATCAGCTTaGATAGCCCATCCCCAGGGCCTTCAGGTCAGCCTCCGGACCACC | + |
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Preference number: 5 (lower is better) Translates to: SRKTHTLATRSEQSA*IAHPQGLQVSLRTT Trigger: GGTGGTCCGGAGGCTGACCTGAAGGCCCTGGGGATGGGCTATGCAAGCTGATTGCTCACTGCGAGTAGCAAGAGTATGTGTTTTTCTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000559615.1 ENST00000644489.1 |
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| CDS CCA 72 bp | TCCCCAGGGCCTTCAGGTCAGCCTCCGGACCACCTCTaGTGGGGTCCTAGTGCTCCTCTGTGGTCTGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: SPGPSGQPPDHL*WGPSAPLWSEA Trigger: GGCTTCAGACCACAGAGGAGCACTAGGACCCCACCAGAGGTGGTCCGGAGGCTGACCTGAAGGCCCTGGGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000559615.1 ENST00000644489.1 |
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| CDS CCA 72 bp | CCAGGGCCTTCAGGTCAGCCTCCGGACCACCTCTGGTaGGGTCCTAGTGCTCCTCTGTGGTCTGAAGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: PGPSGQPPDHLW*GPSAPLWSEAC Trigger: ACAGGCTTCAGACCACAGAGGAGCACTAGGACCCCACCAGAGGTGGTCCGGAGGCTGACCTGAAGGCCCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000559615.1 ENST00000644489.1 |
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| CDS GCA 72 bp | CCAGTTTCAGGCTGGGGATCACAGGGCCCTGACCCCTaGTGTGGCTCCCAGATCAGCCAGGAGCTTGGATAT | + |
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Preference number: 6 (lower is better) Translates to: PVSGWGSQGPDP*CGSQISQELGY Trigger: ATATCCAAGCTCCTGGCTGATCTGGGAGCCACAGCAGGGGTCAGGGCCCTGTGATCCCCAGCCTGAAACTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000559615.1 ENST00000644489.1 |
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| CDS GCA 72 bp | ACACATACTCTTGCTACTCGCAGTGAGCAATCAGCTTaGATAGCCCATCCCCAGGGCCTTCAGGTCAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: THTLATRSEQSA*IAHPQGLQVSL Trigger: GAGGCTGACCTGAAGGCCCTGGGGATGGGCTATGCAAGCTGATTGCTCACTGCGAGTAGCAAGAGTATGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000559615.1 ENST00000644489.1 |
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| CDS TCA 72 bp | TCCTTCCAGAAAAACACATACTCTTGCTACTCGCAGTaGGCAATCAGCTTGCATAGCCCATCCCCAGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: SFQKNTYSCYSQ*AISLHSPSPGP Trigger: AGGCCCTGGGGATGGGCTATGCAAGCTGATTGCTCACTGCGAGTAGCAAGAGTATGTGTTTTTCTGGAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000559615.1 ENST00000644489.1 |
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