Pregenerated sensors for LINC00582 (Homo sapiens)
Ensembl gene IDs: ENSG00000229228Ensembl transcript IDs: ENST00000448058.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCTTGCCCTGGAGAACAGCTGTGCTGGGCCCACTCAGACGTACGTaGCTCCCCAGCAGACTGGCTGCATCTGGTATCCTCTTTGACTTC | + |
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Preference number: 5 (lower is better) Translates to: ALPWRTAVLGPLRRT*LPSRLAASGILFDF Trigger: GAAGTCAAAGAGGATACCAGATGCAGCCAGTCTGCTGGGGAGGCACGTACGTCTGAGTGGGCCCAGCACAGCTGTTCTCCAGGGCAAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS TCA 90 bp | AATATCACTGTACACATTCACGTAGTTCTTTCCGCCTCTGACCTGTaGTTGCTTGGGGATCTGAGCACCACGGACTGGACTGGGGTGACC | + |
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Preference number: 5 (lower is better) Translates to: NITVHIHVVLSASDL*LLGDLSTTDWTGVT Trigger: GGTCACCCCAGTCCAGTCCGTGGTGCTCAGATCCCCAAGCAATCACAGGTCAGAGGCGGAAAGAACTACGTGAATGTGTACAGTGATATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS TCA 90 bp | TGTGCCCAATATCACTGTACACATTCACGTAGTTCTTTCCGCCTCTaGCCTGTGATTGCTTGGGGATCTGAGCACCACGGACTGGACTGG | + |
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Preference number: 5 (lower is better) Translates to: CAQYHCTHSRSSFRL*PVIAWGSEHHGLDW Trigger: CCAGTCCAGTCCGTGGTGCTCAGATCCCCAAGCAATCACAGGTCAGAGGCGGAAAGAACTACGTGAATGTGTACAGTGATATTGGGCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS TCA 90 bp | ACGTACGTGCCTCCCCAGCAGACTGGCTGCATCTGGTATCCTCTTTaGCTTCATCTGCATCTCTGTAACTCGAGGTCAAGCAGAAAAGAA | + |
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Preference number: 5 (lower is better) Translates to: TYVPPQQTGCIWYPL*LHLHLCNSRSSRKE Trigger: TTCTTTTCTGCTTGACCTCGAGTTACAGAGATGCAGATGAAGTCAAAGAGGATACCAGATGCAGCCAGTCTGCTGGGGAGGCACGTACGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS GCA 72 bp | CTGGTGGGTTGGGCTGAATGCGGGCGCTGGGGCAGCTaGCATGGCCAAGCCTTGCCCTGGAGAACAGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: LVGWAECGRWGS*HGQALPWRTAV Trigger: CACAGCTGTTCTCCAGGGCAAGGCTTGGCCATGGCAGCTGCCCCAGCGCCCGCATTCAGCCCAACCCACCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS TCA 72 bp | CTCTGCATTCTTTCCCCTCCTCTGAACGCTGCCCCTTaGCGTTCTTCGGTTTCCCTTCCTTCAGAGCATGTG | + |
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Preference number: 6 (lower is better) Translates to: LCILSPPLNAAP*RSSVSLPSEHV Trigger: CACATGCTCTGAAGGAAGGGAAACCGAAGAACGTCAAGGGGCAGCGTTCAGAGGAGGGGAAAGAATGCAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS TCA 72 bp | GTACACATTCACGTAGTTCTTTCCGCCTCTGACCTGTaGTTGCTTGGGGATCTGAGCACCACGGACTGGACT | + |
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Preference number: 6 (lower is better) Translates to: VHIHVVLSASDL*LLGDLSTTDWT Trigger: AGTCCAGTCCGTGGTGCTCAGATCCCCAAGCAATCACAGGTCAGAGGCGGAAAGAACTACGTGAATGTGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS CAA 72 bp | ACTCTGCATTCTTTCCCCTCCTCTGAACGCTGCCCCTaGACGTTCTTCGGTTTCCCTTCCTTCAGAGCATGT | + |
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Preference number: 6 (lower is better) Translates to: TLHSFPSSERCP*TFFGFPSFRAC Trigger: ACATGCTCTGAAGGAAGGGAAACCGAAGAACGTCAAGGGGCAGCGTTCAGAGGAGGGGAAAGAATGCAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS TCA 72 bp | TGGCTCATGCTCAAGAATGCAGCTCAGTTTCTCAGCTaGCAACACACATCTGACCCAAGGTGTGAAGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: WLMLKNAAQFLS*QHTSDPRCEAQ Trigger: CTGAGCTTCACACCTTGGGTCAGATGTGTGTTGTCAGCTGAGAAACTGAGCTGCATTCTTGAGCATGAGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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| CDS GCA 72 bp | AGACTGGCTGCATCTGGTATCCTCTTTGACTTCATCTaGATCTCTGTAACTCGAGGTCAAGCAGAAAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: RLAASGILFDFI*ISVTRGQAEKN Trigger: ATTCTTTTCTGCTTGACCTCGAGTTACAGAGATGCAGATGAAGTCAAAGAGGATACCAGATGCAGCCAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448058.1 |
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