Pregenerated sensors for LINC00581 (Homo sapiens)

Ensembl gene IDs: ENSG00000280989

Ensembl transcript IDs: ENST00000630914.1, ENST00000652307.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACTGTCATGCTTACAACTTCACAGCAAACCTTTGGGATTAAATTGTaGCATTTCCAGGCTGAGGATCCAGAGCTCGAAACCCTCCTCCTG	+
Preference number: 5 (lower is better) Translates to: TVMLTTSQQTFGIKL*HFQAEDPELETLLL Trigger: CAGGAGGAGGGTTTCGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000630914.1 ENST00000652307.1
CDS CAA 72 bp	CTATATGGCCATAAGCAAAAATCACAGAGGCGGATTTaGATGTGTCTAAAGAGGCAGGCACGGCTGGGCACA	+
Preference number: 6 (lower is better) Translates to: LYGHKQKSQRRI*MCLKRQARLGT Trigger: TGTGCCCAGCCGTGCCTGCCTCTTTAGACACATCAAAATCCGCCTCTGTGATTTTTGCTTATGGCCATATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000630914.1
CDS CAA 90 bp	AAATTGCCTCTATATGGCCATAAGCAAAAATCACAGAGGCGGATTTaGATGTGTCTAAAGAGGCAGGCACGGCTGGGCACAGTAGCTCAA	+
Preference number: 6 (lower is better) Translates to: KLPLYGHKQKSQRRI*MCLKRQARLGTVAQ Trigger: TTGAGCTACTGTGCCCAGCCGTGCCTGCCTCTTTAGACACATCAAAATCCGCCTCTGTGATTTTTGCTTATGGCCATATAGAGGCAATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000630914.1
CDS CAA 90 bp	CATGAAGGCAGGGAGCTACTTCCCTTGTGGTTGGTGAACCTCAAATaGCCTCTATATGGCCATAAGCAAAAATCACAGAGGCGGATTTTG	+
Preference number: 6 (lower is better) Translates to: HEGRELLPLWLVNLK*PLYGHKQKSQRRIL Trigger: CAAAATCCGCCTCTGTGATTTTTGCTTATGGCCATATAGAGGCAATTTGAGGTTCACCAACCACAAGGGAAGTAGCTCCCTGCCTTCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000630914.1
CDS TCA 72 bp	CTCATGAAGGCAGGGAGCTACTTCCCTTGTGGTTGGTaGACCTCAAATTGCCTCTATATGGCCATAAGCAAA	+
Preference number: 6 (lower is better) Translates to: LMKAGSYFPCGW*TSNCLYMAISK Trigger: TTTGCTTATGGCCATATAGAGGCAATTTGAGGTTCACCAACCACAAGGGAAGTAGCTCCCTGCCTTCATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000630914.1
CDS CAA 90 bp	CTGTCGAGTTTCACACTGTCATGCTTACAACTTCACAGCAAACCTTaGGGATTAAATTGTGACATTTCCAGGCTGAGGATCCAGAGCTCG	+
Preference number: 6 (lower is better) Translates to: LSSFTLSCLQLHSKP*GLNCDISRLRIQSS Trigger: CGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000630914.1 ENST00000652307.1
CDS CAA 72 bp	AGGGAGCTACTTCCCTTGTGGTTGGTGAACCTCAAATaGCCTCTATATGGCCATAAGCAAAAATCACAGAGG	+
Preference number: 6 (lower is better) Translates to: RELLPLWLVNLK*PLYGHKQKSQR Trigger: CCTCTGTGATTTTTGCTTATGGCCATATAGAGGCAATTTGAGGTTCACCAACCACAAGGGAAGTAGCTCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000630914.1
CDS GCA 72 bp	GAATTCAAGAATAATCTGTCGAGTTTCACACTGTCATaGTTACAACTTCACAGCAAACCTTTGGGATTAAAT	+
Preference number: 6 (lower is better) Translates to: EFKNNLSSFTLS*LQLHSKPLGLN Trigger: ATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAGATTATTCTTGAATTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000630914.1 ENST00000652307.1

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