Pregenerated sensors for LINC00572 (Homo sapiens)
Ensembl gene IDs: ENSG00000224405Ensembl transcript IDs: ENST00000450264.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CTCTTGGTGTTTGTTCCCACTGGCTGGCTCAGCAGAAAATGTGGCTaGGTTGTAAGACTCTGTTTTGAATGTGGGAGTTGGAAAGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: LLVFVPTGWLSRKCG*VVRLCFECGSWKEQ Trigger: TTGCTCTTTCCAACTCCCACATTCAAAACAGAGTCTTACAACTCAGCCACATTTTCTGCTGAGCCAGCCAGTGGGAACAAACACCAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS TCA 90 bp | GTTTATTATGGCCAGGCCATCCGAATGAAACGCAACTCTCTTCGGTaGTGCTTCCTTCACTATAAACGTCACAGTGTTGAGAGACTGCTT | + |
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Preference number: 5 (lower is better) Translates to: VYYGQAIRMKRNSLR*CFLHYKRHSVERLL Trigger: AAGCAGTCTCTCAACACTGTGACGTTTATAGTGAAGGAAGCATCACCGAAGAGAGTTGCGTTTCATTCGGATGGCCTGGCCATAATAAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS GCA 90 bp | TGCTTCCTTCACTATAAACGTCACAGTGTTGAGAGACTGCTTGTGTaGACGTTTCCAAGTCAGGTGAACTTTCCCTTTTGGTTCCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: CFLHYKRHSVERLLV*TFPSQVNFPFWFPV Trigger: AACTGGGAACCAAAAGGGAAAGTTCACCTGACTTGGAAACGTGCACACAAGCAGTCTCTCAACACTGTGACGTTTATAGTGAAGGAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS TCA 90 bp | TGGCTGGCTCAGCAGAAAATGTGGCTGAGTTGTAAGACTCTGTTTTaGATGTGGGAGTTGGAAAGAGCAAAGATATTCTTCAGGTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: WLAQQKMWLSCKTLF*MWELERAKIFFRFR Trigger: CCTGAACCTGAAGAATATCTTTGCTCTTTCCAACTCCCACATTCAAAACAGAGTCTTACAACTCAGCCACATTTTCTGCTGAGCCAGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS CAA 90 bp | GAGACTGCTTGTGTGCACGTTTCCAAGTCAGGTGAACTTTCCCTTTaGGTTCCCAGTTCCAACTCCTCAGGCAAGGACATAAGGCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: ETACVHVSKSGELSL*VPSSNSSGKDIRLA Trigger: GGCCAGCCTTATGTCCTTGCCTGAGGAGTTGGAACTGGGAACCAAAAGGGAAAGTTCACCTGACTTGGAAACGTGCACACAAGCAGTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS TCA 72 bp | TTGAGAGACTGCTTGTGTGCACGTTTCCAAGTCAGGTaGACTTTCCCTTTTGGTTCCCAGTTCCAACTCCTC | + |
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Preference number: 6 (lower is better) Translates to: LRDCLCARFQVR*TFPFGSQFQLL Trigger: GAGGAGTTGGAACTGGGAACCAAAAGGGAAAGTTCACCTGACTTGGAAACGTGCACACAAGCAGTCTCTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS CAA 72 bp | TGTGTGCACGTTTCCAAGTCAGGTGAACTTTCCCTTTaGGTTCCCAGTTCCAACTCCTCAGGCAAGGACATA | + |
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Preference number: 6 (lower is better) Translates to: CVHVSKSGELSL*VPSSNSSGKDI Trigger: TATGTCCTTGCCTGAGGAGTTGGAACTGGGAACCAAAAGGGAAAGTTCACCTGACTTGGAAACGTGCACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS TCA 72 bp | CATTCAGGACAGTTTATTATGGCCAGGCCATCCGAATaGAACGCAACTCTCTTCGGTGATGCTTCCTTCACT | + |
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Preference number: 6 (lower is better) Translates to: HSGQFIMARPSE*NATLFGDASFT Trigger: AGTGAAGGAAGCATCACCGAAGAGAGTTGCGTTTCATTCGGATGGCCTGGCCATAATAAACTGTCCTGAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS CCA 72 bp | TCATCTAGCAGGGGTTGTGGTGACTTTAATGTGCCCTaGGCAGTAGTAGATACAGGTTCATCAGGTCTTAGT | + |
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Preference number: 6 (lower is better) Translates to: SSSRGCGDFNVP*AVVDTGSSGLS Trigger: ACTAAGACCTGATGAACCTGTATCTACTACTGCCCAGGGCACATTAAAGTCACCACAACCCCTGCTAGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS CAA 72 bp | TTCGGTGATGCTTCCTTCACTATAAACGTCACAGTGTaGAGAGACTGCTTGTGTGCACGTTTCCAAGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: FGDASFTINVTV*RDCLCARFQVR Trigger: CCTGACTTGGAAACGTGCACACAAGCAGTCTCTCAACACTGTGACGTTTATAGTGAAGGAAGCATCACCGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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| CDS GCA 72 bp | CACTATAAACGTCACAGTGTTGAGAGACTGCTTGTGTaGACGTTTCCAAGTCAGGTGAACTTTCCCTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: HYKRHSVERLLV*TFPSQVNFPFW Trigger: CCAAAAGGGAAAGTTCACCTGACTTGGAAACGTGCACACAAGCAGTCTCTCAACACTGTGACGTTTATAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000450264.1 |
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