Pregenerated sensors for LINC00571 (Homo sapiens)

Ensembl gene IDs: ENSG00000223685

Ensembl transcript IDs: ENST00000434565.5, ENST00000451826.2, ENST00000454060.1

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AATCCCACTCTGACATCAATCGACTGCCATAATTCCTGGTCCAGCTaGCCGACCCTGACTCTCTCCCGCTCTTTTCCTCAGGTCGAAGGT	+
Preference number: 5 (lower is better) Translates to: NPTLTSIDCHNSWSS*PTLTLSRSFPQVEG Trigger: ACCTTCGACCTGAGGAAAAGAGCGGGAGAGAGTCAGGGTCGGGCAGCTGGACCAGGAATTATGGCAGTCGATTGATGTCAGAGTGGGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451826.2
CDS CCA 90 bp	TCTACTTTGAATCCCACTCTGACATCAATCGACTGCCATAATTCCTaGTCCAGCTGCCCGACCCTGACTCTCTCCCGCTCTTTTCCTCAG	+
Preference number: 5 (lower is better) Translates to: STLNPTLTSIDCHNS*SSCPTLTLSRSFPQ Trigger: CTGAGGAAAAGAGCGGGAGAGAGTCAGGGTCGGGCAGCTGGACCAGGAATTATGGCAGTCGATTGATGTCAGAGTGGGATTCAAAGTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451826.2
CDS TCA 90 bp	AACCTCTCTTCAAGAGTGCTTCTCAGGTTTCTTTTCATCCTGTCATaGACCTCCACGATCCCCAGCTCCTCTGTGAGAGCAACAGACAGA	+
Preference number: 5 (lower is better) Translates to: NLSSRVLLRFLFILS*TSTIPSSSVRATDR Trigger: TCTGTCTGTTGCTCTCACAGAGGAGCTGGGGATCGTGGAGGTTCATGACAGGATGAAAAGAAACCTGAGAAGCACTCTTGAAGAGAGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000434565.5 ENST00000451826.2
CDS TCA 72 bp	TCGACTGCCATAATTCCTGGTCCAGCTGCCCGACCCTaGCTCTCTCCCGCTCTTTTCCTCAGGTCGAAGGTT	+
Preference number: 6 (lower is better) Translates to: STAIIPGPAARP*LSPALFLRSKV Trigger: AACCTTCGACCTGAGGAAAAGAGCGGGAGAGAGTCAGGGTCGGGCAGCTGGACCAGGAATTATGGCAGTCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000451826.2
CDS CCA 72 bp	AATCCCACTCTGACATCAATCGACTGCCATAATTCCTaGTCCAGCTGCCCGACCCTGACTCTCTCCCGCTCT	+
Preference number: 6 (lower is better) Translates to: NPTLTSIDCHNS*SSCPTLTLSRS Trigger: AGAGCGGGAGAGAGTCAGGGTCGGGCAGCTGGACCAGGAATTATGGCAGTCGATTGATGTCAGAGTGGGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451826.2
CDS CAA 90 bp	AGCTCCTCTGTGAGAGCAACAGACAGAACAGGCCTGGCGTGTACCTaGCTTGGTCACTCAGTGCTCATGGGGATTGTTAGAAGCTTTACT	+
Preference number: 6 (lower is better) Translates to: SSSVRATDRTGLACT*LGHSVLMGIVRSFT Trigger: AGTAAAGCTTCTAACAATCCCCATGAGCACTGAGTGACCAAGCAAGGTACACGCCAGGCCTGTTCTGTCTGTTGCTCTCACAGAGGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000434565.5 ENST00000451826.2
CDS TCA 72 bp	GAAAGTTGTGCTGTAGAGGACTTGGAGGCAATGCTCTaGAGCCAAGGAAGCAGACAGGTGCATGGACAAGAT	+
Preference number: 6 (lower is better) Translates to: ESCAVEDLEAML*SQGSRQVHGQD Trigger: ATCTTGTCCATGCACCTGTCTGCTTCCTTGGCTTCAGAGCATTGCCTCCAAGTCCTCTACAGCACAACTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451826.2
CDS GCA 72 bp	AGTTCTACTTTGAATCCCACTCTGACATCAATCGACTaGCATAATTCCTGGTCCAGCTGCCCGACCCTGACT	+
Preference number: 6 (lower is better) Translates to: SSTLNPTLTSID*HNSWSSCPTLT Trigger: AGTCAGGGTCGGGCAGCTGGACCAGGAATTATGGCAGTCGATTGATGTCAGAGTGGGATTCAAAGTAGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451826.2
CDS TCA 72 bp	CAACACAATATCCCAGTACATCATAAGGTTGGATGCTaGAGGGAAAGTTGTGCTGTAGAGGACTTGGAGGCA	+
Preference number: 6 (lower is better) Translates to: QHNIPVHHKVGC*RESCAVEDLEA Trigger: TGCCTCCAAGTCCTCTACAGCACAACTTTCCCTTCAGCATCCAACCTTATGATGTACTGGGATATTGTGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000451826.2
CDS TCA 72 bp	TCGTCACTTGTAAATGCAATGATCTTAGGCAGATTATaGAACTTCTCTGCCTCAACACTGTTATCCAGTCCA	+
Preference number: 6 (lower is better) Translates to: SSLVNAMILGRL*NFSASTLLSSP Trigger: TGGACTGGATAACAGTGTTGAGGCAGAGAAGTTTCATAATCTGCCTAAGATCATTGCATTTACAAGTGACGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434565.5
CDS GCA 72 bp	TGCCAAAATTTGTGCAGTGGGTTCGTCACTTGTAAATaGAATGATCTTAGGCAGATTATGAAACTTCTCTGC	+
Preference number: 6 (lower is better) Translates to: CQNLCSGFVTCK*NDLRQIMKLLC Trigger: GCAGAGAAGTTTCATAATCTGCCTAAGATCATTGCATTTACAAGTGACGAACCCACTGCACAAATTTTGGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000434565.5
CDS TCA 72 bp	TCTCTGCCTCAACACTGTTATCCAGTCCAAATGATATaGTTCGAAAGTTATTCAGAAACCTCTCTTCAAGAG	+
Preference number: 6 (lower is better) Translates to: SLPQHCYPVQMI*FESYSETSLQE Trigger: CTCTTGAAGAGAGGTTTCTGAATAACTTTCGAATCATATCATTTGGACTGGATAACAGTGTTGAGGCAGAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434565.5
CDS TCA 72 bp	AAACTTCTCTGCCTCAACACTGTTATCCAGTCCAAATaGTATGATTCGAAAGTTATTCAGAAACCTCTCTTC	+
Preference number: 6 (lower is better) Translates to: KLLCLNTVIQSK*YDSKVIQKPLF Trigger: GAAGAGAGGTTTCTGAATAACTTTCGAATCATATCATTTGGACTGGATAACAGTGTTGAGGCAGAGAAGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000434565.5
CDS GCA 72 bp	CCTCATATTCACAAAAGGTATCTGGATTTTAGCATCTaGTGTCTTAGCATCTCTCCAAAGTATAACCATCAT	+
Preference number: 6 (lower is better) Translates to: PHIHKRYLDFSI*CLSISPKYNHH Trigger: ATGATGGTTATACTTTGGAGAGATGCTAAGACAGCAGATGCTAAAATCCAGATACCTTTTGTGAATATGAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000451826.2 ENST00000454060.1
CDS TCA 72 bp	ACAGTGAAGTTGTTGTCTTATAGGAACCACTGCTACTaGACAGATAGTTATGTCTGGAATTTCAACATACTA	+
Preference number: 6 (lower is better) Translates to: TVKLLSYRNHCY*TDSYVWNFNIL Trigger: TAGTATGTTGAAATTCCAGACATAACTATCTGTTCAGTAGCAGTGGTTCCTATAAGACAACAACTTCACTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000451826.2 ENST00000454060.1