Pregenerated sensors for LINC00564 (Homo sapiens)
Ensembl gene IDs: ENSG00000260094Ensembl transcript IDs: ENST00000567258.1
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTCTTGGTCTCGCTGACTTCAACAATGAAGCCGCGGACCCTCCGGTaGGTGTTGCAGTTCTTAAAGATGGTGTGTCTGGAGTTTGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: FLVSLTSTMKPRTLR*VLQFLKMVCLEFAP Trigger: AGGAGCAAACTCCAGACACACCATCTTTAAGAACTGCAACACTCACCGGAGGGTCCGCGGCTTCATTGTTGAAGTCAGCGAGACCAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS TCA 90 bp | AGTGTTGCAGTTCTTAAAGATGGTGTGTCTGGAGTTTGCTCCTTCTaGTGTTCGGATGTGTCCAGAGTTTCTTCCTACCGGTGGGTTCGT | + |
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Preference number: 5 (lower is better) Translates to: SVAVLKDGVSGVCSF*CSDVSRVSSYRWVR Trigger: ACGAACCCACCGGTAGGAAGAAACTCTGGACACATCCGAACATCAGAAGGAGCAAACTCCAGACACACCATCTTTAAGAACTGCAACACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS TCA 90 bp | CTCTCTGCTTCCATGAGTCTGGCTTTATTAAATTCCATATACAGGTaGGACTGCATCTGGAATTGGTGGGTTCTTGGTCTCGCTGACTTC | + |
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Preference number: 5 (lower is better) Translates to: LSASMSLALLNSIYR*DCIWNWWVLGLADF Trigger: GAAGTCAGCGAGACCAAGAACCCACCAATTCCAGATGCAGTCTCACCTGTATATGGAATTTAATAAAGCCAGACTCATGGAAGCAGAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS GCA 90 bp | ATAAAGGCAGTGCAGACCCAAACAGTGAGCAGCAACAAGATTTATTaGAAAGAGCAAAAGAACAAACACCACACTGCATGCCAACAGAAA | + |
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Preference number: 5 (lower is better) Translates to: IKAVQTQTVSSNKIY*KEQKNKHHTACQQK Trigger: TTTCTGTTGGCATGCAGTGTGGTGTTTGTTCTTTTGCTCTTTGCAATAAATCTTGTTGCTGCTCACTGTTTGGGTCTGCACTGCCTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS CCA 72 bp | GGATGTGTCCAGAGTTTCTTCCTACCGGTGGGTTCGTaGTCTCCCTGGCCTCAGGAGTCAACCTGCAGACCT | + |
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Preference number: 6 (lower is better) Translates to: GCVQSFFLPVGS*SPWPQESTCRP Trigger: AGGTCTGCAGGTTGACTCCTGAGGCCAGGGAGACCACGAACCCACCGGTAGGAAGAAACTCTGGACACATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS TCA 72 bp | TCGCTGACTTCAACAATGAAGCCGCGGACCCTCCGGTaGGTGTTGCAGTTCTTAAAGATGGTGTGTCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: SLTSTMKPRTLR*VLQFLKMVCLE Trigger: CTCCAGACACACCATCTTTAAGAACTGCAACACTCACCGGAGGGTCCGCGGCTTCATTGTTGAAGTCAGCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS CAA 72 bp | TATACAGGTGAGACTGCATCTGGAATTGGTGGGTTCTaGGTCTCGCTGACTTCAACAATGAAGCCGCGGACC | + |
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Preference number: 6 (lower is better) Translates to: YTGETASGIGGF*VSLTSTMKPRT Trigger: GGTCCGCGGCTTCATTGTTGAAGTCAGCGAGACCAAGAACCCACCAATTCCAGATGCAGTCTCACCTGTATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS GCA 72 bp | CCCCATTTACCTCCAATCCAAGCTTCTGGCAACCTCTaGTCTACTCTCTGCTTCCATGAGTCTGGCTTTATT | + |
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Preference number: 6 (lower is better) Translates to: PHLPPIQASGNL*STLCFHESGFI Trigger: AATAAAGCCAGACTCATGGAAGCAGAGAGTAGAGCAGAGGTTGCCAGAAGCTTGGATTGGAGGTAAATGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS TCA 72 bp | GTTCTTAAAGATGGTGTGTCTGGAGTTTGCTCCTTCTaGTGTTCGGATGTGTCCAGAGTTTCTTCCTACCGG | + |
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Preference number: 6 (lower is better) Translates to: VLKDGVSGVCSF*CSDVSRVSSYR Trigger: CCGGTAGGAAGAAACTCTGGACACATCCGAACATCAGAAGGAGCAAACTCCAGACACACCATCTTTAAGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS CAA 90 bp | CATAAAGGCAGTGCAGACCCAAACAGTGAGCAGCAACAAGATTTATaGCAAAGAGCAAAAGAACAAACACCACACTGCATGCCAACAGAA | + |
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Preference number: 6 (lower is better) Translates to: HKGSADPNSEQQQDL*QRAKEQTPHCMPTE Trigger: TTCTGTTGGCATGCAGTGTGGTGTTTGTTCTTTTGCTCTTTGCAATAAATCTTGTTGCTGCTCACTGTTTGGGTCTGCACTGCCTTTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS TCA 72 bp | TCCATGAGTCTGGCTTTATTAAATTCCATATACAGGTaGGACTGCATCTGGAATTGGTGGGTTCTTGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SMSLALLNSIYR*DCIWNWWVLGL Trigger: GAGACCAAGAACCCACCAATTCCAGATGCAGTCTCACCTGTATATGGAATTTAATAAAGCCAGACTCATGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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| CDS CAA 72 bp | AGTGCAGACCCAAACAGTGAGCAGCAACAAGATTTATaGCAAAGAGCAAAAGAACAAACACCACACTGCATG | + |
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Preference number: 6 (lower is better) Translates to: SADPNSEQQQDL*QRAKEQTPHCM Trigger: CATGCAGTGTGGTGTTTGTTCTTTTGCTCTTTGCAATAAATCTTGTTGCTGCTCACTGTTTGGGTCTGCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000567258.1 |
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