Pregenerated sensors for LINC00563 (Homo sapiens)
Ensembl gene IDs: ENSG00000261097Ensembl transcript IDs: ENST00000566370.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACCAGATCTGTCTGCCAAGTAAGCCCAGGCTCATCCTCCACACGCTaGCCCCATCAGGAGGCAACCTGGCCCCTTCTACTGAATCTCTAC | + |
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Preference number: 5 (lower is better) Translates to: TRSVCQVSPGSSSTR*PHQEATWPLLLNLY Trigger: GTAGAGATTCAGTAGAAGGGGCCAGGTTGCCTCCTGATGGGGGCAGCGTGTGGAGGATGAGCCTGGGCTTACTTGGCAGACAGATCTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CCA 90 bp | AGCCCAGGCTCATCCTCCACACGCTGCCCCCATCAGGAGGCAACCTaGCCCCTTCTACTGAATCTCTACATCAGATGGAGCCTGCATATG | + |
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Preference number: 5 (lower is better) Translates to: SPGSSSTRCPHQEAT*PLLLNLYIRWSLHM Trigger: CATATGCAGGCTCCATCTGATGTAGAGATTCAGTAGAAGGGGCCAGGTTGCCTCCTGATGGGGGCAGCGTGTGGAGGATGAGCCTGGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CCA 90 bp | CATCAGGAGGCAACCTGGCCCCTTCTACTGAATCTCTACATCAGATaGAGCCTGCATATGACTCAGCAGAAACCTCAGAGGAAATTCTGC | + |
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Preference number: 5 (lower is better) Translates to: HQEATWPLLLNLYIR*SLHMTQQKPQRKFC Trigger: GCAGAATTTCCTCTGAGGTTTCTGCTGAGTCATATGCAGGCTCCATCTGATGTAGAGATTCAGTAGAAGGGGCCAGGTTGCCTCCTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS GCA 90 bp | AGATGGAGCCTGCATATGACTCAGCAGAAACCTCAGAGGAAATTCTaGTTCCTTCAGGAATTTCAGGGCATGGTGGTGATTGGAAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: RWSLHMTQQKPQRKF*FLQEFQGMVVIGKS Trigger: ACTCTTTCCAATCACCACCATGCCCTGAAATTCCTGAAGGAAGCAGAATTTCCTCTGAGGTTTCTGCTGAGTCATATGCAGGCTCCATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CCA 90 bp | CAGGAATTTCAGGGCATGGTGGTGATTGGAAAGAGTCAGGACAGTTaGCCTTTACTTCATATTGCATCACAACCACTAAGTGGCTTTGGG | + |
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Preference number: 5 (lower is better) Translates to: QEFQGMVVIGKSQDS*PLLHIASQPLSGFG Trigger: CCCAAAGCCACTTAGTGGTTGTGATGCAATATGAAGTAAAGGCCAACTGTCCTGACTCTTTCCAATCACCACCATGCCCTGAAATTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS TCA 90 bp | CTCTCTCTTATAAGGAACATTGTGATGACATTGGACCCACCCAGATaGTCCCAGATAGTCTCACCATCTCAAGGTCAGCTGATTATCAAC | + |
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Preference number: 5 (lower is better) Translates to: LSLIRNIVMTLDPPR*SQIVSPSQGQLIIN Trigger: GTTGATAATCAGCTGACCTTGAGATGGTGAGACTATCTGGGATCATCTGGGTGGGTCCAATGTCATCACAATGTTCCTTATAAGAGAGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS GCA 72 bp | GTCTGCCAAGTAAGCCCAGGCTCATCCTCCACACGCTaGCCCCATCAGGAGGCAACCTGGCCCCTTCTACTG | + |
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Preference number: 6 (lower is better) Translates to: VCQVSPGSSSTR*PHQEATWPLLL Trigger: CAGTAGAAGGGGCCAGGTTGCCTCCTGATGGGGGCAGCGTGTGGAGGATGAGCCTGGGCTTACTTGGCAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CCA 72 bp | TCATCCTCCACACGCTGCCCCCATCAGGAGGCAACCTaGCCCCTTCTACTGAATCTCTACATCAGATGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SSSTRCPHQEAT*PLLLNLYIRWS Trigger: GCTCCATCTGATGTAGAGATTCAGTAGAAGGGGCCAGGTTGCCTCCTGATGGGGGCAGCGTGTGGAGGATGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS GCA 72 bp | GTCAGCAGGGGTGTGTTCCAGCTTCTAGAGGCTTCCTaGATTCCTTCGCTCATGGCCTCACTCCTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: VSRGVFQLLEAS*IPSLMASLLHL Trigger: AAGATGGAGGAGTGAGGCCATGAGCGAAGGAATGCAGGAAGCCTCTAGAAGCTGGAACACACCCCTGCTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CCA 72 bp | GCAACCTGGCCCCTTCTACTGAATCTCTACATCAGATaGAGCCTGCATATGACTCAGCAGAAACCTCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: ATWPLLLNLYIR*SLHMTQQKPQR Trigger: CCTCTGAGGTTTCTGCTGAGTCATATGCAGGCTCCATCTGATGTAGAGATTCAGTAGAAGGGGCCAGGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CAA 72 bp | CACTTTGCTGCAGAACAGTGCCACTCAGAGCATAGTTaGTCGACCTCTGTCAGTCCAGAGTATTCGGTACCT | + |
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Preference number: 6 (lower is better) Translates to: HFAAEQCHSEHS*STSVSPEYSVP Trigger: AGGTACCGAATACTCTGGACTGACAGAGGTCGACAAACTATGCTCTGAGTGGCACTGTTCTGCAGCAAAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS TCA 72 bp | ATAAGGAACATTGTGATGACATTGGACCCACCCAGATaGTCCCAGATAGTCTCACCATCTCAAGGTCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: IRNIVMTLDPPR*SQIVSPSQGQL Trigger: CAGCTGACCTTGAGATGGTGAGACTATCTGGGATCATCTGGGTGGGTCCAATGTCATCACAATGTTCCTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CAA 90 bp | TCAGGAATTTCAGGGCATGGTGGTGATTGGAAAGAGTCAGGACAGTaGGCCTTTACTTCATATTGCATCACAACCACTAAGTGGCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: SGISGHGGDWKESGQ*AFTSYCITTTKWLW Trigger: CCAAAGCCACTTAGTGGTTGTGATGCAATATGAAGTAAAGGCCAACTGTCCTGACTCTTTCCAATCACCACCATGCCCTGAAATTCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS GCA 72 bp | CTGCATATGACTCAGCAGAAACCTCAGAGGAAATTCTaGTTCCTTCAGGAATTTCAGGGCATGGTGGTGATT | + |
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Preference number: 6 (lower is better) Translates to: LHMTQQKPQRKF*FLQEFQGMVVI Trigger: AATCACCACCATGCCCTGAAATTCCTGAAGGAAGCAGAATTTCCTCTGAGGTTTCTGCTGAGTCATATGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS CAA 72 bp | TCAGGGCATGGTGGTGATTGGAAAGAGTCAGGACAGTaGGCCTTTACTTCATATTGCATCACAACCACTAAG | + |
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Preference number: 6 (lower is better) Translates to: SGHGGDWKESGQ*AFTSYCITTTK Trigger: CTTAGTGGTTGTGATGCAATATGAAGTAAAGGCCAACTGTCCTGACTCTTTCCAATCACCACCATGCCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS GCA 72 bp | TGGAAAGAGTCAGGACAGTTGGCCTTTACTTCATATTaGATCACAACCACTAAGTGGCTTTGGGAAGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: WKESGQLAFTSY*ITTTKWLWEVC Trigger: GCAAACTTCCCAAAGCCACTTAGTGGTTGTGATGCAATATGAAGTAAAGGCCAACTGTCCTGACTCTTTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS TCA 72 bp | TGTAGCAAGGCTTTCGTGGTGAAGGAAGCAGTGTGTTaGTTTACTTCCTGGCATAATCTTCTTATCTCATTG | + |
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Preference number: 6 (lower is better) Translates to: CSKAFVVKEAVC*FTSWHNLLISL Trigger: CAATGAGATAAGAAGATTATGCCAGGAAGTAAATCAACACACTGCTTCCTTCACCACGAAAGCCTTGCTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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| CDS TCA 72 bp | ACAAAACAGCTTTATTACTGCACAGTTTTGGAGGTCTaGAGTCTGAAATGGGTTTCACTAGGTACAAGTCCA | + |
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Preference number: 6 (lower is better) Translates to: TKQLYYCTVLEV*SLKWVSLGTSP Trigger: TGGACTTGTACCTAGTGAAACCCATTTCAGACTTCAGACCTCCAAAACTGTGCAGTAATAAAGCTGTTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566370.1 |
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