Pregenerated sensors for LINC00562 (Homo sapiens)

Ensembl gene IDs: ENSG00000260388

Ensembl transcript IDs: ENST00000566385.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CTCCACCCAAAGCTGCTCCATTCATACCTAAGGCTCAAATGGCTGTaGAGACAGTGTTTGTTACCGGTCTGCAATAAGATAACTTACATC	+
Preference number: 5 (lower is better) Translates to: LHPKLLHSYLRLKWL*RQCLLPVCNKITYI Trigger: GATGTAAGTTATCTTATTGCAGACCGGTAACAAACACTGTCTTCACAGCCATTTGAGCCTTAGGTATGAATGGAGCAGCTTTGGGTGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS GCA 72 bp	GACCGACTGTCAGGATATGTTAAACGTTGGGTGAGGTaGAAGTTGCATGAGGGGAGGGGGTGTGTGTCTGTT	+
Preference number: 6 (lower is better) Translates to: DRLSGYVKRWVR*KLHEGRGCVSV Trigger: AACAGACACACACCCCCTCCCCTCATGCAACTTGCACCTCACCCAACGTTTAACATATCCTGACAGTCGGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS CAA 90 bp	TCTCCCCCACTACATTACAAACACCATAAGGGACCATGTCTCCTATaGATCATTGTATACCATGTAGCCCTGGTACATTGTGTGGCACAT	+
Preference number: 6 (lower is better) Translates to: SPPLHYKHHKGPCLL*IIVYHVALVHCVAH Trigger: ATGTGCCACACAATGTACCAGGGCTACATGGTATACAATGATCAATAGGAGACATGGTCCCTTATGGTGTTTGTAATGTAGTGGGGGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS GCA 72 bp	GTTTTGTTCACTGCTATTACCCCGTGCCTAGAACAGTaGCTAGCATGTGGAAGACTCCCAGATACAATAAAT	+
Preference number: 6 (lower is better) Translates to: VLFTAITPCLEQ*LACGRLPDTIN Trigger: ATTTATTGTATCTGGGAGTCTTCCACATGCTAGGCACTGTTCTAGGCACGGGGTAATAGCAGTGAACAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS TCA 72 bp	AAGCTGCTCCATTCATACCTAAGGCTCAAATGGCTGTaGAGACAGTGTTTGTTACCGGTCTGCAATAAGATA	+
Preference number: 6 (lower is better) Translates to: KLLHSYLRLKWL*RQCLLPVCNKI Trigger: TATCTTATTGCAGACCGGTAACAAACACTGTCTTCACAGCCATTTGAGCCTTAGGTATGAATGGAGCAGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS CCA 72 bp	AGTTCTGTTGAGTCTGTGTCCGCTCAGCAGCTCAGCTaGGCATCTCAAAGGTCAAATCATTTAAATATTTTC	+
Preference number: 6 (lower is better) Translates to: SSVESVSAQQLS*ASQRSNHLNIF Trigger: GAAAATATTTAAATGATTTGACCTTTGAGATGCCCAGCTGAGCTGCTGAGCGGACACAGACTCAACAGAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS CAA 72 bp	AATTTTATGATAGATGTTCAACAATTCTTAGTTCTGTaGAGTCTGTGTCCGCTCAGCAGCTCAGCTGGGCAT	+
Preference number: 6 (lower is better) Translates to: NFMIDVQQFLVL*SLCPLSSSAGH Trigger: ATGCCCAGCTGAGCTGCTGAGCGGACACAGACTCAACAGAACTAAGAATTGTTGAACATCTATCATAAAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS CAA 72 bp	CTACATTACAAACACCATAAGGGACCATGTCTCCTATaGATCATTGTATACCATGTAGCCCTGGTACATTGT	+
Preference number: 6 (lower is better) Translates to: LHYKHHKGPCLL*IIVYHVALVHC Trigger: ACAATGTACCAGGGCTACATGGTATACAATGATCAATAGGAGACATGGTCCCTTATGGTGTTTGTAATGTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000566385.2
CDS GCA 72 bp	TTACATCAGAATATAAATGAAAGCACTGAAGCTTCCTaGATTGGAAAAGTCTTGCTACCTTGCTACCAAGAT	+
Preference number: 6 (lower is better) Translates to: LHQNINESTEAS*IGKVLLPCYQD Trigger: ATCTTGGTAGCAAGGTAGCAAGACTTTTCCAATGCAGGAAGCTTCAGTGCTTTCATTTATATTCTGATGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566385.2

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