Pregenerated sensors for LINC00561 (Homo sapiens)
Ensembl gene IDs: ENSG00000261206Ensembl transcript IDs: ENST00000565815.1
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGGTCAAAGGAGTAGTGGGAAGTGAATTTGAAACTCCGTGCTGGTaGAGCTTTGCATTCTGGCGCTGTTATGCATGGAGTCGGCCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: LVKGVVGSEFETPCW*SFAFWRCYAWSRPS Trigger: ACTTGGCCGACTCCATGCATAACAGCGCCAGAATGCAAAGCTCCACCAGCACGGAGTTTCAAATTCACTTCCCACTACTCCTTTGACCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 90 bp | TCTCTGGTCAAAGGAGTAGTGGGAAGTGAATTTGAAACTCCGTGCTaGTGGAGCTTTGCATTCTGGCGCTGTTATGCATGGAGTCGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: SLVKGVVGSEFETPC*WSFAFWRCYAWSRP Trigger: TGGCCGACTCCATGCATAACAGCGCCAGAATGCAAAGCTCCACCAGCACGGAGTTTCAAATTCACTTCCCACTACTCCTTTGACCAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 90 bp | GTTGCTCTGCGACAGATGATATGCCAAGCAGCTGGGAAGCAAAGATaGGGAAGACATGACCCTGTCCTGGAAAAGCTTCTTGACTTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VALRQMICQAAGKQR*GRHDPVLEKLLDLK Trigger: CTTCAAGTCAAGAAGCTTTTCCAGGACAGGGTCATGTCTTCCTCATCTTTGCTTCCCAGCTGCTTGGCATATCATCTGTCGCAGAGCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS GCA 90 bp | AGAACCATGTATGAACCAGAGCCAGCCATCACCAGAACCCAACCATaGTGGCTGTGTGATCTTAGACTTCCAATCTCTAGAATTGTAAGA | + |
|
Preference number: 5 (lower is better) Translates to: RTMYEPEPAITRTQP*WLCDLRLPISRIVR Trigger: TCTTACAATTCTAGAGATTGGAAGTCTAAGATCACACAGCCAGCATGGTTGGGTTCTGGTGATGGCTGGCTCTGGTTCATACATGGTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 90 bp | CAGAAGTATTTTTCAACGTATACTGAGAAGTTGCTCTGCGACAGATaGTATGCCAAGCAGCTGGGAAGCAAAGATGAGGAAGACATGACC | + |
|
Preference number: 5 (lower is better) Translates to: QKYFSTYTEKLLCDR*YAKQLGSKDEEDMT Trigger: GGTCATGTCTTCCTCATCTTTGCTTCCCAGCTGCTTGGCATATCATCTGTCGCAGAGCAACTTCTCAGTATACGTTGAAAAATACTTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 90 bp | AGAGGTAACAGAGTCTTTGAACTACATTTGACTCCCAGGGCTAGCTaGAAAGCCCTTTCTTCTCACAACTTATTTCACAGCCACTGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: RGNRVFELHLTPRAS*KALSSHNLFHSHCV Trigger: GACACAGTGGCTGTGAAATAAGTTGTGAGAAGAAAGGGCTTTTCAGCTAGCCCTGGGAGTCAAATGTAGTTCAAAGACTCTGTTACCTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS GCA 90 bp | GGAGCAGAACACTTCAGAAGTATTTTTCAACGTATACTGAGAAGTTaGTCTGCGACAGATGATATGCCAAGCAGCTGGGAAGCAAAGATG | + |
|
Preference number: 5 (lower is better) Translates to: GAEHFRSIFQRILRS*SATDDMPSSWEAKM Trigger: CATCTTTGCTTCCCAGCTGCTTGGCATATCATCTGTCGCAGAGCAACTTCTCAGTATACGTTGAAAAATACTTCTGAAGTGTTCTGCTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 90 bp | GTCCAAAGTTGCATTAAGATTAAGGCATTTAGGATATGGAAAGGTTaGTGCAGCTGGAGAGGTCTTCGGTACAGAGATGACACTGAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: VQSCIKIKAFRIWKG*CSWRGLRYRDDTEG Trigger: TCCTTCAGTGTCATCTCTGTACCGAAGACCTCTCCAGCTGCATCAACCTTTCCATATCCTAAATGCCTTAATCTTAATGCAACTTTGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 90 bp | AGACATCAGGCTACATTAGAGGTAACAGAGTCTTTGAACTACATTTaGCTCCCAGGGCTAGCTGAAAAGCCCTTTCTTCTCACAACTTAT | + |
|
Preference number: 5 (lower is better) Translates to: RHQATLEVTESLNYI*LPGLAEKPFLLTTY Trigger: ATAAGTTGTGAGAAGAAAGGGCTTTTCAGCTAGCCCTGGGAGTCAAATGTAGTTCAAAGACTCTGTTACCTCTAATGTAGCCTGATGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS GCA 90 bp | TTATATGTTAGAATCATGTCTTACCAGACTGCATGTTTTCCACAATaGCAACCAACATACATGGCTTGGCACGTATTAGTACTCACTATG | + |
|
Preference number: 5 (lower is better) Translates to: LYVRIMSYQTACFPQ*QPTYMAWHVLVLTM Trigger: CATAGTGAGTACTAATACGTGCCAAGCCATGTATGTTGGTTGGCATTGTGGAAAACATGCAGTCTGGTAAGACATGATTCTAACATATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 90 bp | ATGTACATATGTCCTCAAAATAGTGTGCAGCTATTAATAAGAACATaGCAGCTCTGTATGTTCCTGTATAGAGATTGCCTTCAATGTACA | + |
|
Preference number: 5 (lower is better) Translates to: MYICPQNSVQLLIRT*QLCMFLYRDCLQCT Trigger: TGTACATTGAAGGCAATCTCTATACAGGAACATACAGAGCTGCCATGTTCTTATTAATAGCTGCACACTATTTTGAGGACATATGTACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 72 bp | TGCTGGTGGAGCTTTGCATTCTGGCGCTGTTATGCATaGAGTCGGCCAAGTTTGTCCTTTGGAGCTCCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: CWWSFAFWRCYA*SRPSLSFGAPR Trigger: TCTGGGAGCTCCAAAGGACAAACTTGGCCGACTCCATGCATAACAGCGCCAGAATGCAAAGCTCCACCAGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 72 bp | TGGGAAGTGAATTTGAAACTCCGTGCTGGTGGAGCTTaGCATTCTGGCGCTGTTATGCATGGAGTCGGCCAA | + |
|
Preference number: 6 (lower is better) Translates to: WEVNLKLRAGGA*HSGAVMHGVGQ Trigger: TTGGCCGACTCCATGCATAACAGCGCCAGAATGCAAAGCTCCACCAGCACGGAGTTTCAAATTCACTTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 72 bp | GGAGTAGTGGGAAGTGAATTTGAAACTCCGTGCTGGTaGAGCTTTGCATTCTGGCGCTGTTATGCATGGAGT | + |
|
Preference number: 6 (lower is better) Translates to: GVVGSEFETPCW*SFAFWRCYAWS Trigger: ACTCCATGCATAACAGCGCCAGAATGCAAAGCTCCACCAGCACGGAGTTTCAAATTCACTTCCCACTACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 72 bp | TGTAGCTCTCAAAATCCCACTTCAGAGAACCATGTATaGACCAGAGCCAGCCATCACCAGAACCCAACCATG | + |
|
Preference number: 6 (lower is better) Translates to: CSSQNPTSENHV*TRASHHQNPTM Trigger: CATGGTTGGGTTCTGGTGATGGCTGGCTCTGGTTCATACATGGTTCTCTGAAGTGGGATTTTGAGAGCTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 72 bp | GAACCAGAGCCAGCCATCACCAGAACCCAACCATGCTaGCTGTGTGATCTTAGACTTCCAATCTCTAGAATT | + |
|
Preference number: 6 (lower is better) Translates to: EPEPAITRTQPC*LCDLRLPISRI Trigger: AATTCTAGAGATTGGAAGTCTAAGATCACACAGCCAGCATGGTTGGGTTCTGGTGATGGCTGGCTCTGGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 72 bp | AAAGGAGTAGTGGGAAGTGAATTTGAAACTCCGTGCTaGTGGAGCTTTGCATTCTGGCGCTGTTATGCATGG | + |
|
Preference number: 6 (lower is better) Translates to: KGVVGSEFETPC*WSFAFWRCYAW Trigger: CCATGCATAACAGCGCCAGAATGCAAAGCTCCACCAGCACGGAGTTTCAAATTCACTTCCCACTACTCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 72 bp | TTGTGGCTCGGTTTCTGCAGAGGTTCTAGCAACTCTTaGAAGTTGAGCATTGACACCCAGGAGGCTTCCAAT | + |
|
Preference number: 6 (lower is better) Translates to: LWLGFCRGSSNS*KLSIDTQEASN Trigger: ATTGGAAGCCTCCTGGGTGTCAATGCTCAACTTCAAAGAGTTGCTAGAACCTCTGCAGAAACCGAGCCACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 72 bp | GGCGCTGTTATGCATGGAGTCGGCCAAGTTTGTCCTTaGGAGCTCCCAGAAGGAAAGTATATGTACATTCAC | + |
|
Preference number: 6 (lower is better) Translates to: GAVMHGVGQVCP*ELPEGKYMYIH Trigger: GTGAATGTACATATACTTTCCTTCTGGGAGCTCCAAAGGACAAACTTGGCCGACTCCATGCATAACAGCGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 72 bp | GCATTCTGGCGCTGTTATGCATGGAGTCGGCCAAGTTaGTCCTTTGGAGCTCCCAGAAGGAAAGTATATGTA | + |
|
Preference number: 6 (lower is better) Translates to: AFWRCYAWSRPS*SFGAPRRKVYV Trigger: TACATATACTTTCCTTCTGGGAGCTCCAAAGGACAAACTTGGCCGACTCCATGCATAACAGCGCCAGAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 90 bp | TGGAGCTTTGCATTCTGGCGCTGTTATGCATGGAGTCGGCCAAGTTaGTCCTTTGGAGCTCCCAGAAGGAAAGTATATGTACATTCACAA | + |
|
Preference number: 6 (lower is better) Translates to: WSFAFWRCYAWSRPS*SFGAPRRKVYVHSQ Trigger: TTGTGAATGTACATATACTTTCCTTCTGGGAGCTCCAAAGGACAAACTTGGCCGACTCCATGCATAACAGCGCCAGAATGCAAAGCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS GCA 72 bp | ACTAAAGAGTCTTGGGCTGGAGCTCTGTTTATTTTGTaGATAGTCCCGCTAGAAAAGTCCCACAGGAGTCTC | + |
|
Preference number: 6 (lower is better) Translates to: TKESWAGALFIL*IVPLEKSHRSL Trigger: GAGACTCCTGTGGGACTTTTCTAGCGGGACTATGCACAAAATAAACAGAGCTCCAGCCCAAGACTCTTTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 72 bp | GAAAGTATGGAACAAGGCTCCCTCCACACTGTTGAATaGGACAGAAATGGGTACCACAGGTTTGGTAAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: ESMEQGSLHTVE*DRNGYHRFGKK Trigger: TTTCTTACCAAACCTGTGGTACCCATTTCTGTCCCATTCAACAGTGTGGAGGGAGCCTTGTTCCATACTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 72 bp | CTCGGTTTCTGCAGAGGTTCTAGCAACTCTTTGAAGTaGAGCATTGACACCCAGGAGGCTTCCAATTTGATA | + |
|
Preference number: 6 (lower is better) Translates to: LGFCRGSSNSLK*SIDTQEASNLI Trigger: TATCAAATTGGAAGCCTCCTGGGTGTCAATGCTCAACTTCAAAGAGTTGCTAGAACCTCTGCAGAAACCGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 72 bp | ATACATGGCTTGGCACGTATTAGTACTCACTATGTGTaGCATCCAGTAGGAAGTGTGCAATTGCAGTGGTGC | + |
|
Preference number: 6 (lower is better) Translates to: IHGLARISTHYV*HPVGSVQLQWC Trigger: GCACCACTGCAATTGCACACTTCCTACTGGATGCAACACATAGTGAGTACTAATACGTGCCAAGCCATGTAT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 90 bp | AAATTGTGGCTCGGTTTCTGCAGAGGTTCTAGCAACTCTTTGAAGTaGAGCATTGACACCCAGGAGGCTTCCAATTTGATACATGGACTT | + |
|
Preference number: 6 (lower is better) Translates to: KLWLGFCRGSSNSLK*SIDTQEASNLIHGL Trigger: AAGTCCATGTATCAAATTGGAAGCCTCCTGGGTGTCAATGCTCAACTTCAAAGAGTTGCTAGAACCTCTGCAGAAACCGAGCCACAATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 72 bp | GCTACATTAGAGGTAACAGAGTCTTTGAACTACATTTaGCTCCCAGGGCTAGCTGAAAAGCCCTTTCTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: ATLEVTESLNYI*LPGLAEKPFLL Trigger: GAGAAGAAAGGGCTTTTCAGCTAGCCCTGGGAGTCAAATGTAGTTCAAAGACTCTGTTACCTCTAATGTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CCA 72 bp | GCATGTTTTCCACAATGCCAACCAACATACATGGCTTaGCACGTATTAGTACTCACTATGTGTTGCATCCAG | + |
|
Preference number: 6 (lower is better) Translates to: ACFPQCQPTYMA*HVLVLTMCCIQ Trigger: CTGGATGCAACACATAGTGAGTACTAATACGTGCCAAGCCATGTATGTTGGTTGGCATTGTGGAAAACATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 90 bp | TTACCAGACTGCATGTTTTCCACAATGCCAACCAACATACATGGCTaGGCACGTATTAGTACTCACTATGTGTTGCATCCAGTAGGAAGT | + |
|
Preference number: 6 (lower is better) Translates to: LPDCMFSTMPTNIHG*ARISTHYVLHPVGS Trigger: ACTTCCTACTGGATGCAACACATAGTGAGTACTAATACGTGCCAAGCCATGTATGTTGGTTGGCATTGTGGAAAACATGCAGTCTGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 72 bp | TGCATTAAGATTAAGGCATTTAGGATATGGAAAGGTTaGTGCAGCTGGAGAGGTCTTCGGTACAGAGATGAC | + |
|
Preference number: 6 (lower is better) Translates to: CIKIKAFRIWKG*CSWRGLRYRDD Trigger: GTCATCTCTGTACCGAAGACCTCTCCAGCTGCATCAACCTTTCCATATCCTAAATGCCTTAATCTTAATGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS CAA 72 bp | TGCATGTTTTCCACAATGCCAACCAACATACATGGCTaGGCACGTATTAGTACTCACTATGTGTTGCATCCA | + |
|
Preference number: 6 (lower is better) Translates to: CMFSTMPTNIHG*ARISTHYVLHP Trigger: TGGATGCAACACATAGTGAGTACTAATACGTGCCAAGCCATGTATGTTGGTTGGCATTGTGGAAAACATGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 72 bp | GAGCAGAACACTTCAGAAGTATTTTTCAACGTATACTaGGAAGTTGCTCTGCGACAGATGATATGCCAAGCA | + |
|
Preference number: 6 (lower is better) Translates to: EQNTSEVFFNVY*EVALRQMICQA Trigger: TGCTTGGCATATCATCTGTCGCAGAGCAACTTCTCAGTATACGTTGAAAAATACTTCTGAAGTGTTCTGCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS TCA 72 bp | TTCTTCTCACAACTTATTTCACAGCCACTGTGTCATTaGCCTTGCGTTAGAACCACTAAATCAGAGAATGCC | + |
|
Preference number: 6 (lower is better) Translates to: FFSQLISQPLCH*PCVRTTKSENA Trigger: GGCATTCTCTGATTTAGTGGTTCTAACGCAAGGTCAATGACACAGTGGCTGTGAAATAAGTTGTGAGAAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||
| CDS GCA 72 bp | AGAATCATGTCTTACCAGACTGCATGTTTTCCACAATaGCAACCAACATACATGGCTTGGCACGTATTAGTA | + |
|
Preference number: 6 (lower is better) Translates to: RIMSYQTACFPQ*QPTYMAWHVLV Trigger: TACTAATACGTGCCAAGCCATGTATGTTGGTTGGCATTGTGGAAAACATGCAGTCTGGTAAGACATGATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000565815.1 |
||