Pregenerated sensors for LINC00560 (Homo sapiens)

Ensembl gene IDs: ENSG00000261666

Ensembl transcript IDs: ENST00000564593.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ACTAGGATGAGAGTGCATAGACTGTCTCTGGAACGGAATGAAGGCTaGAGAATGTGTTATGTGGAAAGGACTGAGACAAAGTGTGGAGTG	+
Preference number: 5 (lower is better) Translates to: TRMRVHRLSLERNEG*RMCYVERTETKCGV Trigger: CACTCCACACTTTGTCTCAGTCCTTTCCACATAACACATTCTTCAGCCTTCATTCCGTTCCAGAGACAGTCTATGCACTCTCATCCTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564593.1
CDS CCA 90 bp	GACAAAGTGTGGAGTGATGGCAAAAAGAAAGGACATGAGCAAGTCTaGGTAGAAACTCTAGGTGCCAGACCAAATAGAACTTTGTACTTA	+
Preference number: 5 (lower is better) Translates to: DKVWSDGKKKGHEQV*VETLGARPNRTLYL Trigger: TAAGTACAAAGTTCTATTTGGTCTGGCACCTAGAGTTTCTACCCAGACTTGCTCATGTCCTTTCTTTTTGCCATCACTCCACACTTTGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564593.1
CDS TCA 72 bp	AGAGTGCATAGACTGTCTCTGGAACGGAATGAAGGCTaGAGAATGTGTTATGTGGAAAGGACTGAGACAAAG	+
Preference number: 6 (lower is better) Translates to: RVHRLSLERNEG*RMCYVERTETK Trigger: CTTTGTCTCAGTCCTTTCCACATAACACATTCTTCAGCCTTCATTCCGTTCCAGAGACAGTCTATGCACTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564593.1
CDS TCA 72 bp	AATCAGCCTGGTCAATATGTGCAATTCTCACTAGGATaGGAGTGCATAGACTGTCTCTGGAACGGAATGAAG	+
Preference number: 6 (lower is better) Translates to: NQPGQYVQFSLG*ECIDCLWNGMK Trigger: CTTCATTCCGTTCCAGAGACAGTCTATGCACTCTCATCCTAGTGAGAATTGCACATATTGACCAGGCTGATT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564593.1
CDS CCA 72 bp	TGGAGTGATGGCAAAAAGAAAGGACATGAGCAAGTCTaGGTAGAAACTCTAGGTGCCAGACCAAATAGAACT	+
Preference number: 6 (lower is better) Translates to: WSDGKKKGHEQV*VETLGARPNRT Trigger: AGTTCTATTTGGTCTGGCACCTAGAGTTTCTACCCAGACTTGCTCATGTCCTTTCTTTTTGCCATCACTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564593.1
CDS CCA 72 bp	AGAGTAAAGGGATTAGAAAGGGTATTTCAATCAGCCTaGTCAATATGTGCAATTCTCACTAGGATGAGAGTG	+
Preference number: 6 (lower is better) Translates to: RVKGLERVFQSA*SICAILTRMRV Trigger: CACTCTCATCCTAGTGAGAATTGCACATATTGACCAGGCTGATTGAAATACCCTTTCTAATCCCTTTACTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564593.1
CDS CCA 72 bp	CATAAAGAGATGGTAACAAGAAGATTCTATTTAATCTaGGAGTATTGTCTCTCACAGGCTCTAAAGGAAGCA	+
Preference number: 6 (lower is better) Translates to: HKEMVTRRFYLI*EYCLSQALKEA Trigger: TGCTTCCTTTAGAGCCTGTGAGAGACAATACTCCCAGATTAAATAGAATCTTCTTGTTACCATCTCTTTATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564593.1

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