Pregenerated sensors for LINC00557 (Homo sapiens)

Ensembl gene IDs: ENSG00000260962

Ensembl transcript IDs: ENST00000563184.1

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CAA 90 bp	TACAAGATATTCATTGATACCAGTTCACTAGTTTCCTACCACATTTaGAAAATCAGGGCATTGGACCCATATGCAACAAGAGGCAGTGCT	+
Preference number: 6 (lower is better) Translates to: YKIFIDTSSLVSYHI*KIRALDPYATRGSA Trigger: AGCACTGCCTCTTGTTGCATATGGGTCCAATGCCCTGATTTTCAAAATGTGGTAGGAAACTAGTGAACTGGTATCAATGAATATCTTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563184.1
CDS CAA 72 bp	TTCATTGATACCAGTTCACTAGTTTCCTACCACATTTaGAAAATCAGGGCATTGGACCCATATGCAACAAGA	+
Preference number: 6 (lower is better) Translates to: FIDTSSLVSYHI*KIRALDPYATR Trigger: TCTTGTTGCATATGGGTCCAATGCCCTGATTTTCAAAATGTGGTAGGAAACTAGTGAACTGGTATCAATGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563184.1
CDS TCA 72 bp	AGTGTGTGGCAAAATGTCTTCTTCCCTTTATGCCTCTaGTATTTAAGCCTTAGGACTACTTTATTCAAACCT	+
Preference number: 6 (lower is better) Translates to: SVWQNVFFPLCL*YLSLRTTLFKP Trigger: AGGTTTGAATAAAGTAGTCCTAAGGCTTAAATATCAGAGGCATAAAGGGAAGAAGACATTTTGCCACACACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563184.1
CDS CAA 72 bp	TATTGTAAGATATGGAGTCTGCATGATCAAGATTATTaGTTTTTACAGTGTGTGGCAAAATGTCTTCTTCCC	+
Preference number: 6 (lower is better) Translates to: YCKIWSLHDQDY*FLQCVAKCLLP Trigger: GGGAAGAAGACATTTTGCCACACACTGTAAAAACAAATAATCTTGATCATGCAGACTCCATATCTTACAATA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000563184.1

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