Pregenerated sensors for LINC00556 (Homo sapiens)

Ensembl gene IDs: ENSG00000260131

Ensembl transcript IDs: ENST00000569603.1

Found 2 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TTTTCACATTTGCCCTGCCTTTTCCAAAGGAGAGAGATCTCAATGTaGACAGATATTTGTACATCCATGTTCATTGCAGCTCTGTTCACA	+
Preference number: 5 (lower is better) Translates to: FSHLPCLFQRREISM*TDICTSMFIAALFT Trigger: TGTGAACAGAGCTGCAATGAACATGGATGTACAAATATCTGTTCACATTGAGATCTCTCTCCTTTGGAAAAGGCAGGGCAAATGTGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000569603.1
CDS CAA 90 bp	GCCCTGCCTTTTCCAAAGGAGAGAGATCTCAATGTGAACAGATATTaGTACATCCATGTTCATTGCAGCTCTGTTCACAACAGCCAAGAG	+
Preference number: 6 (lower is better) Translates to: ALPFPKERDLNVNRY*YIHVHCSSVHNSQE Trigger: CTCTTGGCTGTTGTGAACAGAGCTGCAATGAACATGGATGTACAAATATCTGTTCACATTGAGATCTCTCTCCTTTGGAAAAGGCAGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569603.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu