Pregenerated sensors for LINC00554 (Homo sapiens)
Ensembl gene IDs: ENSG00000260738Ensembl transcript IDs: ENST00000564841.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGCCGCGAGGTCCCGGGTTTCGCCATCCTGAGACCCCCGCGCGGATaGCCCAGGAGGGGCGCGGCGGCCCTGAGTCAAGGTGGGCGGGGG | + |
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Preference number: 5 (lower is better) Translates to: GREVPGFAILRPPRG*PRRGAAALSQGGRG Trigger: CCCCCGCCCACCTTGACTCAGGGCCGCCGCGCCCCTCCTGGGCCATCCGCGCGGGGGTCTCAGGATGGCGAAACCCGGGACCTCGCGGCC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 90 bp | TGGGCCGAGGACAGAGCGCCTCAGGCATCGTCGGCTTCCCACGGCTaGGGCCCAGGCCCAGCCTGCGGCCTTGGAGCCATTCGCTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: WAEDRAPQASSASHG*GPGPACGLGAIRSK Trigger: CTTGGAGCGAATGGCTCCAAGGCCGCAGGCTGGGCCTGGGCCGCAGCCGTGGGAAGCCGACGATGCCTGAGGCGCTCTGTCCTCGGCCCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 90 bp | GCGGCCTCTCCTGATCCTTTCCTGCGGTCATACAAGTTCCTAGGGTaGGCCGAGGACAGAGCGCCTCAGGCATCGTCGGCTTCCCACGGC | + |
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Preference number: 5 (lower is better) Translates to: AASPDPFLRSYKFLG*AEDRAPQASSASHG Trigger: GCCGTGGGAAGCCGACGATGCCTGAGGCGCTCTGTCCTCGGCCCACCCTAGGAACTTGTATGACCGCAGGAAAGGATCAGGAGAGGCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS TCA 90 bp | CCGGCTTCACGATTCCCGGGCCCTCGGGCATGTGAGGGACTTGAGTaGATGCAGCTCCCTCAACTCACTCCCGCAAAACCACAGCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: PASRFPGPRACEGLE*MQLPQLTPAKPQPR Trigger: TCTTGGCTGTGGTTTTGCGGGAGTGAGTTGAGGGAGCTGCATTCACTCAAGTCCCTCACATGCCCGAGGGCCCGGGAATCGTGAAGCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 90 bp | CTTCACGATTCCCGGGCCCTCGGGCATGTGAGGGACTTGAGTGAATaGAGCTCCCTCAACTCACTCCCGCAAAACCACAGCCAAGAGGGC | + |
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Preference number: 5 (lower is better) Translates to: LHDSRALGHVRDLSE*SSLNSLPQNHSQEG Trigger: GCCCTCTTGGCTGTGGTTTTGCGGGAGTGAGTTGAGGGAGCTGCATTCACTCAAGTCCCTCACATGCCCGAGGGCCCGGGAATCGTGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 90 bp | CCTGGGCGCAGGGCTGTGTGTGCGAGGACAATTATTTTCATCAGCTaGTTGCTAGCCCGCGCCCGACTGCTCCTCTTTGCAGAACCGACG | + |
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Preference number: 5 (lower is better) Translates to: PGRRAVCARTIIFIS*LLARARLLLFAEPT Trigger: CGTCGGTTCTGCAAAGAGGAGCAGTCGGGCGCGGGCTAGCAAGCAGCTGATGAAAATAATTGTCCTCGCACACACAGCCCTGCGCCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 90 bp | CTCCATGGAGACTCCCTCCTTGGGAACGTCGAACTCTCTCTGCCTTaGGGAGTGGGGCTCGATAAAGGGTACCTAGGTCGCACCCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: LHGDSLLGNVELSLP*GVGLDKGYLGRTLA Trigger: TGCCAGGGTGCGACCTAGGTACCCTTTATCGAGCCCCACTCCCCAAGGCAGAGAGAGTTCGACGTTCCCAAGGAGGGAGTCTCCATGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 90 bp | CGACGGGCTTTCAACTCTGGAAGTGAAGCAGGACGAATTCCTCCATaGAGACTCCCTCCTTGGGAACGTCGAACTCTCTCTGCCTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: RRAFNSGSEAGRIPP*RLPPWERRTLSALG Trigger: CCCCAAGGCAGAGAGAGTTCGACGTTCCCAAGGAGGGAGTCTCCATGGAGGAATTCGTCCTGCTTCACTTCCAGAGTTGAAAGCCCGTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 90 bp | CTAGTGCCAGACAACGGTGCTCCCCAACCACTTGGCTGGAACGCTTaGTTTCGATTTGTTTGTTTCGCGCATTTCCCTAAAGAGCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: LVPDNGAPQPLGWNA*FRFVCFAHFPKEPG Trigger: GCCCGGCTCTTTAGGGAAATGCGCGAAACAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGTCTGGCACTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 90 bp | AGCACTTCCTTTCCTAGTGCCAGACAACGGTGCTCCCCAACCACTTaGCTGGAACGCTTGCTTTCGATTTGTTTGTTTCGCGCATTTCCC | + |
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Preference number: 5 (lower is better) Translates to: STSFPSARQRCSPTT*LERLLSICLFRAFP Trigger: GGGAAATGCGCGAAACAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGTCTGGCACTAGGAAAGGAAGTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 90 bp | CTTCCTTTCCTAGTGCCAGACAACGGTGCTCCCCAACCACTTGGCTaGAACGCTTGCTTTCGATTTGTTTGTTTCGCGCATTTCCCTAAA | + |
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Preference number: 5 (lower is better) Translates to: LPFLVPDNGAPQPLG*NACFRFVCFAHFPK Trigger: TTTAGGGAAATGCGCGAAACAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGTCTGGCACTAGGAAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 90 bp | AGAACACTTTCAAGAAGCACTTCCTTTCCTAGTGCCAGACAACGGTaGTCCCCAACCACTTGGCTGGAACGCTTGCTTTCGATTTGTTTG | + |
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Preference number: 5 (lower is better) Translates to: RTLSRSTSFPSARQR*SPTTWLERLLSICL Trigger: CAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGTCTGGCACTAGGAAAGGAAGTGCTTCTTGAAAGTGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS TCA 90 bp | TATTCTCTTGTGCCTCCAACATTGTTGCACTTGAAAGTTGAATGTTaGGGACTCAAGGTTGGAAACCAAATCGAGTGCCTTGTGTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: YSLVPPTLLHLKVEC*GLKVGNQIECLVWK Trigger: CTTCCACACAAGGCACTCGATTTGGTTTCCAACCTTGAGTCCTCAACATTCAACTTTCAAGTGCAACAATGTTGGAGGCACAAGAGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS TCA 90 bp | AATCTACTATTCTCTTGTGCCTCCAACATTGTTGCACTTGAAAGTTaGATGTTGAGGACTCAAGGTTGGAAACCAAATCGAGTGCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: NLLFSCASNIVALES*MLRTQGWKPNRVPC Trigger: ACAAGGCACTCGATTTGGTTTCCAACCTTGAGTCCTCAACATTCAACTTTCAAGTGCAACAATGTTGGAGGCACAAGAGAATAGTAGATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 90 bp | GAAGCTTTGAAAGTAGCTCCTCTCAGCAGGTTAAAAAGTGAAGTCTaGGTCCTGGCATTTAAATGTCTTTGTTATTGTGTCAGGCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: EALKVAPLSRLKSEV*VLAFKCLCYCVRQV Trigger: AACTTGCCTGACACAATAACAAAGACATTTAAATGCCAGGACGCAGACTTCACTTTTTAACCTGCTGAGAGGAGCTACTTTCAAAGCTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 90 bp | GTCCTTCCTTTATTATTATTTTTAGCCCGTGTATCATTACCTAACTaGTATGCGTTCTTCTGCCCAGCTCCTGATGATCTAGTTGAATTC | + |
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Preference number: 5 (lower is better) Translates to: VLPLLLFLARVSLPN*YAFFCPAPDDLVEF Trigger: GAATTCAACTAGATCATCAGGAGCTGGGCAGAAGAACGCATACCAGTTAGGTAATGATACACGGGCTAAAAATAATAATAAAGGAAGGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 90 bp | GCCCTGAGTCAAGGTGGGCGGGGGCAGGTGCTTCCCTCCACCGCGTaGTCCTATGCCGGCGCGGTCCCCACCGCCCGACCTAGCCCGGCG | + |
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Preference number: 6 (lower is better) Translates to: ALSQGGRGQVLPSTA*SYAGAVPTARPSPA Trigger: CGCCGGGCTAGGTCGGGCGGTGGGGACCGCGCCGGCATAGGACAACGCGGTGGAGGGAAGCACCTGCCCCCGCCCACCTTGACTCAGGGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 72 bp | GTCCCGGGTTTCGCCATCCTGAGACCCCCGCGCGGATaGCCCAGGAGGGGCGCGGCGGCCCTGAGTCAAGGT | + |
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Preference number: 6 (lower is better) Translates to: VPGFAILRPPRG*PRRGAAALSQG Trigger: ACCTTGACTCAGGGCCGCCGCGCCCCTCCTGGGCCATCCGCGCGGGGGTCTCAGGATGGCGAAACCCGGGAC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 72 bp | CAAGGTGGGCGGGGGCAGGTGCTTCCCTCCACCGCGTaGTCCTATGCCGGCGCGGTCCCCACCGCCCGACCT | + |
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Preference number: 6 (lower is better) Translates to: QGGRGQVLPSTA*SYAGAVPTARP Trigger: AGGTCGGGCGGTGGGGACCGCGCCGGCATAGGACAACGCGGTGGAGGGAAGCACCTGCCCCCGCCCACCTTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 90 bp | CAGGCCCGGCTTCACGATTCCCGGGCCCTCGGGCATGTGAGGGACTaGAGTGAATGCAGCTCCCTCAACTCACTCCCGCAAAACCACAGC | + |
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Preference number: 6 (lower is better) Translates to: QARLHDSRALGHVRD*SECSSLNSLPQNHS Trigger: GCTGTGGTTTTGCGGGAGTGAGTTGAGGGAGCTGCATTCACTCAAGTCCCTCACATGCCCGAGGGCCCGGGAATCGTGAAGCCGGGCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 90 bp | GGGCGCAGGGCTGTGTGTGCGAGGACAATTATTTTCATCAGCTGCTaGCTAGCCCGCGCCCGACTGCTCCTCTTTGCAGAACCGACGGGC | + |
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Preference number: 6 (lower is better) Translates to: GRRAVCARTIIFISC*LARARLLLFAEPTG Trigger: GCCCGTCGGTTCTGCAAAGAGGAGCAGTCGGGCGCGGGCTAGCAAGCAGCTGATGAAAATAATTGTCCTCGCACACACAGCCCTGCGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 72 bp | TCCCGGGCCCTCGGGCATGTGAGGGACTTGAGTGAATaGAGCTCCCTCAACTCACTCCCGCAAAACCACAGC | + |
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Preference number: 6 (lower is better) Translates to: SRALGHVRDLSE*SSLNSLPQNHS Trigger: GCTGTGGTTTTGCGGGAGTGAGTTGAGGGAGCTGCATTCACTCAAGTCCCTCACATGCCCGAGGGCCCGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 72 bp | CCTGATCCTTTCCTGCGGTCATACAAGTTCCTAGGGTaGGCCGAGGACAGAGCGCCTCAGGCATCGTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: PDPFLRSYKFLG*AEDRAPQASSA Trigger: AGCCGACGATGCCTGAGGCGCTCTGTCCTCGGCCCACCCTAGGAACTTGTATGACCGCAGGAAAGGATCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS TCA 72 bp | CGATTCCCGGGCCCTCGGGCATGTGAGGGACTTGAGTaGATGCAGCTCCCTCAACTCACTCCCGCAAAACCA | + |
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Preference number: 6 (lower is better) Translates to: RFPGPRACEGLE*MQLPQLTPAKP Trigger: TGGTTTTGCGGGAGTGAGTTGAGGGAGCTGCATTCACTCAAGTCCCTCACATGCCCGAGGGCCCGGGAATCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 72 bp | GACTCCCTCCTTGGGAACGTCGAACTCTCTCTGCCTTaGGGAGTGGGGCTCGATAAAGGGTACCTAGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: DSLLGNVELSLP*GVGLDKGYLGR Trigger: GCGACCTAGGTACCCTTTATCGAGCCCCACTCCCCAAGGCAGAGAGAGTTCGACGTTCCCAAGGAGGGAGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 72 bp | CTTCACGATTCCCGGGCCCTCGGGCATGTGAGGGACTaGAGTGAATGCAGCTCCCTCAACTCACTCCCGCAA | + |
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Preference number: 6 (lower is better) Translates to: LHDSRALGHVRD*SECSSLNSLPQ Trigger: TTGCGGGAGTGAGTTGAGGGAGCTGCATTCACTCAAGTCCCTCACATGCCCGAGGGCCCGGGAATCGTGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 72 bp | AGGGCTGTGTGTGCGAGGACAATTATTTTCATCAGCTaGTTGCTAGCCCGCGCCCGACTGCTCCTCTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: RAVCARTIIFIS*LLARARLLLFA Trigger: TGCAAAGAGGAGCAGTCGGGCGCGGGCTAGCAAGCAGCTGATGAAAATAATTGTCCTCGCACACACAGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 72 bp | TCAAGAAGCACTTCCTTTCCTAGTGCCAGACAACGGTaGTCCCCAACCACTTGGCTGGAACGCTTGCTTTCG | + |
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Preference number: 6 (lower is better) Translates to: SRSTSFPSARQR*SPTTWLERLLS Trigger: CGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGTCTGGCACTAGGAAAGGAAGTGCTTCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 72 bp | GCTGTGTGTGCGAGGACAATTATTTTCATCAGCTGCTaGCTAGCCCGCGCCCGACTGCTCCTCTTTGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: AVCARTIIFISC*LARARLLLFAE Trigger: TTCTGCAAAGAGGAGCAGTCGGGCGCGGGCTAGCAAGCAGCTGATGAAAATAATTGTCCTCGCACACACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 90 bp | ACAACGGTGCTCCCCAACCACTTGGCTGGAACGCTTGCTTTCGATTaGTTTGTTTCGCGCATTTCCCTAAAGAGCCGGGCTCTTTGCGCT | + |
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Preference number: 6 (lower is better) Translates to: TTVLPNHLAGTLAFD*FVSRISLKSRALCA Trigger: AGCGCAAAGAGCCCGGCTCTTTAGGGAAATGCGCGAAACAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 72 bp | CTAGTGCCAGACAACGGTGCTCCCCAACCACTTGGCTaGAACGCTTGCTTTCGATTTGTTTGTTTCGCGCAT | + |
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Preference number: 6 (lower is better) Translates to: LVPDNGAPQPLG*NACFRFVCFAH Trigger: ATGCGCGAAACAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGTCTGGCACTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 72 bp | CTCCCCAACCACTTGGCTGGAACGCTTGCTTTCGATTaGTTTGTTTCGCGCATTTCCCTAAAGAGCCGGGCT | + |
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Preference number: 6 (lower is better) Translates to: LPNHLAGTLAFD*FVSRISLKSRA Trigger: AGCCCGGCTCTTTAGGGAAATGCGCGAAACAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 72 bp | TTCAACTCTGGAAGTGAAGCAGGACGAATTCCTCCATaGAGACTCCCTCCTTGGGAACGTCGAACTCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: FNSGSEAGRIPP*RLPPWERRTLS Trigger: AGAGAGAGTTCGACGTTCCCAAGGAGGGAGTCTCCATGGAGGAATTCGTCCTGCTTCACTTCCAGAGTTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CCA 72 bp | TTTCCTAGTGCCAGACAACGGTGCTCCCCAACCACTTaGCTGGAACGCTTGCTTTCGATTTGTTTGTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: FPSARQRCSPTT*LERLLSICLFR Trigger: GCGAAACAAACAAATCGAAAGCAAGCGTTCCAGCCAAGTGGTTGGGGAGCACCGTTGTCTGGCACTAGGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 72 bp | GCGTTGAGCTATTTCTCGCTTCCATTGAACAGTCTGTaGCTCAAACACAACAGCCAACAAACGCCAGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: ALSYFSLPLNSL*LKHNSQQTPAA Trigger: GGCAGCTGGCGTTTGTTGGCTGTTGTGTTTGAGCAACAGACTGTTCAATGGAAGCGAGAAATAGCTCAACGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 90 bp | ATTAAGAGCGCGTTGAGCTATTTCTCGCTTCCATTGAACAGTCTGTaGCTCAAACACAACAGCCAACAAACGCCAGCTGCCTCAACAAAA | + |
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Preference number: 6 (lower is better) Translates to: IKSALSYFSLPLNSL*LKHNSQQTPAASTK Trigger: TTTTGTTGAGGCAGCTGGCGTTTGTTGGCTGTTGTGTTTGAGCAACAGACTGTTCAATGGAAGCGAGAAATAGCTCAACGCGCTCTTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 72 bp | GTTGAGGACTCAAGGTTGGAAACCAAATCGAGTGCCTaGTGTGGAAGCAAAAGATGTTTTCCTCTGACAGAT | + |
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Preference number: 6 (lower is better) Translates to: VEDSRLETKSSA*CGSKRCFPLTD Trigger: ATCTGTCAGAGGAAAACATCTTTTGCTTCCACACAAGGCACTCGATTTGGTTTCCAACCTTGAGTCCTCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 90 bp | TTTCGATTTGTTTGTTTCGCGCATTTCCCTAAAGAGCCGGGCTCTTaGCGCTGTTTTAATTCTGCTTTAAAAATGCATCGCTTCTGCCCT | + |
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Preference number: 6 (lower is better) Translates to: FRFVCFAHFPKEPGS*RCFNSALKMHRFCP Trigger: AGGGCAGAAGCGATGCATTTTTAAAGCAGAATTAAAACAGCGCAAAGAGCCCGGCTCTTTAGGGAAATGCGCGAAACAAACAAATCGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 72 bp | TCTGTTGCTCAAACACAACAGCCAACAAACGCCAGCTaGCTCAACAAAAGTAGAAACCTAACCCTTTTATGT | + |
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Preference number: 6 (lower is better) Translates to: SVAQTQQPTNAS*LNKSRNLTLLC Trigger: ACATAAAAGGGTTAGGTTTCTACTTTTGTTGAGGCAGCTGGCGTTTGTTGGCTGTTGTGTTTGAGCAACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS CAA 72 bp | TCTATTAAGAGCGCGTTGAGCTATTTCTCGCTTCCATaGAACAGTCTGTTGCTCAAACACAACAGCCAACAA | + |
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Preference number: 6 (lower is better) Translates to: SIKSALSYFSLP*NSLLLKHNSQQ Trigger: TTGTTGGCTGTTGTGTTTGAGCAACAGACTGTTCAATGGAAGCGAGAAATAGCTCAACGCGCTCTTAATAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS TCA 72 bp | TTCTCTTGTGCCTCCAACATTGTTGCACTTGAAAGTTaGATGTTGAGGACTCAAGGTTGGAAACCAAATCGA | + |
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Preference number: 6 (lower is better) Translates to: FSCASNIVALES*MLRTQGWKPNR Trigger: TCGATTTGGTTTCCAACCTTGAGTCCTCAACATTCAACTTTCAAGTGCAACAATGTTGGAGGCACAAGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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| CDS GCA 72 bp | AAAGTAGCTCCTCTCAGCAGGTTAAAAAGTGAAGTCTaGGTCCTGGCATTTAAATGTCTTTGTTATTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: KVAPLSRLKSEV*VLAFKCLCYCV Trigger: GACACAATAACAAAGACATTTAAATGCCAGGACGCAGACTTCACTTTTTAACCTGCTGAGAGGAGCTACTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000564841.1 |
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