RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LINC00545 (Homo sapiens)

Ensembl gene IDs: ENSG00000236094

Ensembl transcript IDs: ENST00000440633.1, ENST00000665143.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CAAGTCGCTATGCCCGAAGCCTTTGAAGGGAGCCAGCAGGGTCCATaGGAGGTTCAGGACACATATCTGCAGCCCTGCTTCTGGCCCCAC +
Preference number: 5 (lower is better)
Translates to: QVAMPEAFEGSQQGP*EVQDTYLQPCFWPH
Trigger: GTGGGGCCAGAAGCAGGGCTGCAGATATGTGTCCTGAACCTCCCATGGACCCTGCTGGCTCCCTTCAAAGGCTTCGGGCATAGCGACTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000440633.1
ENST00000665143.1
CDS TCA 90 bp CTCTGCCACAACGTGAGGGAGAGAAGTCTGCAGACGGCTGACTGGTaGCGACTGAACAAGACGGAAAGGCAAGTCGCTATGCCCGAAGCC +
Preference number: 5 (lower is better)
Translates to: LCHNVRERSLQTADW*RLNKTERQVAMPEA
Trigger: GGCTTCGGGCATAGCGACTTGCCTTTCCGTCTTGTTCAGTCGTCACCAGTCAGCCGTCTGCAGACTTCTCTCCCTCACGTTGTGGCAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000440633.1
ENST00000665143.1
CDS TCA 90 bp ACAACTCCTCTGCCACAACGTGAGGGAGAGAAGTCTGCAGACGGCTaGCTGGTGACGACTGAACAAGACGGAAAGGCAAGTCGCTATGCC +
Preference number: 5 (lower is better)
Translates to: TTPLPQREGEKSADG*LVTTEQDGKASRYA
Trigger: GGCATAGCGACTTGCCTTTCCGTCTTGTTCAGTCGTCACCAGTCAGCCGTCTGCAGACTTCTCTCCCTCACGTTGTGGCAGAGGAGTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000440633.1
ENST00000665143.1
CDS TCA 90 bp ACGACTGAACAAGACGGAAAGGCAAGTCGCTATGCCCGAAGCCTTTaGAGGGAGCCAGCAGGGTCCATGGGAGGTTCAGGACACATATCT +
Preference number: 5 (lower is better)
Translates to: TTEQDGKASRYARSL*REPAGSMGGSGHIS
Trigger: AGATATGTGTCCTGAACCTCCCATGGACCCTGCTGGCTCCCTTCAAAGGCTTCGGGCATAGCGACTTGCCTTTCCGTCTTGTTCAGTCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000440633.1
ENST00000665143.1
CDS TCA 90 bp TTCAAACTCCTCTTAACCTTCATGCCAAGAACAGAGATCTCTGTTTaGAAGCATGTCTCCGATGACCATTTATTTGCTCTGCCTGGTAAA +
Preference number: 5 (lower is better)
Translates to: FKLLLTFMPRTEISV*KHVSDDHLFALPGK
Trigger: TTTACCAGGCAGAGCAAATAAATGGTCATCGGAGACATGCTTTCAAACAGAGATCTCTGTTCTTGGCATGAAGGTTAAGAGGAGTTTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000665143.1
CDS TCA 90 bp TGGTCTGTAATTTCCTTCTGGAAGGAATATCCACTCCATATGGCCTaGAGCAAGAATTTCAAACTCCTCTTAACCTTCATGCCAAGAACA +
Preference number: 5 (lower is better)
Translates to: WSVISFWKEYPLHMA*SKNFKLLLTFMPRT
Trigger: TGTTCTTGGCATGAAGGTTAAGAGGAGTTTGAAATTCTTGCTTCAGGCCATATGGAGTGGATATTCCTTCCAGAAGGAAATTACAGACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000665143.1
CDS TCA 72 bp GGGAGAGAAGTCTGCAGACGGCTGACTGGTGACGACTaGACAAGACGGAAAGGCAAGTCGCTATGCCCGAAG +
Preference number: 6 (lower is better)
Translates to: GREVCRRLTGDD*TRRKGKSLCPK
Trigger: CTTCGGGCATAGCGACTTGCCTTTCCGTCTTGTTCAGTCGTCACCAGTCAGCCGTCTGCAGACTTCTCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000440633.1
ENST00000665143.1
CDS GCA 72 bp TTTGAAAGCATGTCTCCGATGACCATTTATTTGCTCTaGCTGGTAAACCTTCGTGTAATGCGTGGCTTTAAG +
Preference number: 6 (lower is better)
Translates to: FESMSPMTIYLL*LVNLRVMRGFK
Trigger: CTTAAAGCCACGCATTACACGAAGGTTTACCAGGCAGAGCAAATAAATGGTCATCGGAGACATGCTTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000665143.1
CDS TCA 72 bp ATTTCCTTCTGGAAGGAATATCCACTCCATATGGCCTaGAGCAAGAATTTCAAACTCCTCTTAACCTTCATG +
Preference number: 6 (lower is better)
Translates to: ISFWKEYPLHMA*SKNFKLLLTFM
Trigger: CATGAAGGTTAAGAGGAGTTTGAAATTCTTGCTTCAGGCCATATGGAGTGGATATTCCTTCCAGAAGGAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000665143.1