Pregenerated sensors for LINC00544 (Homo sapiens)
Ensembl gene IDs: ENSG00000122043Ensembl transcript IDs: ENST00000400540.5, ENST00000481738.2, ENST00000656266.1, ENST00000658535.1, ENST00000662443.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGGAAACGACCAGCTTCCCCAAACAGGCAGCTCCGAGAAGGCGTCTaGTCCGCGTCTGCTCCCACTGAGCCAAGGTCCAGCCCAAACGCT | + |
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Preference number: 5 (lower is better) Translates to: WKRPASPNRQLREGV*SASAPTEPRSSPNA Trigger: AGCGTTTGGGCTGGACCTTGGCTCAGTGGGAGCAGACGCGGAGCAGACGCCTTCTCGGAGCTGCCTGTTTGGGGAAGCTGGTCGTTTCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000400540.5 ENST00000656266.1 ENST00000662443.1 |
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| CDS GCA 90 bp | TGCCAGTCTGAAGAGGGAACAAGCAGAGCTCAGGATGTGGTGCCGTaGGAGGGCGGTAAGTGGAAGGAAGCAGCGCATGGGGAGGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: CQSEEGTSRAQDVVP*EGGKWKEAAHGEGA Trigger: GGCACCCTCCCCATGCGCTGCTTCCTTCCACTTACCGCCCTCGCACGGCACCACATCCTGAGCTCTGCTTGTTCCCTCTTCAGACTGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656266.1 ENST00000662443.1 |
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| CDS GCA 90 bp | CCACCTGCCAGTCTGAAGAGGGAACAAGCAGAGCTCAGGATGTGGTaGCGTGCGAGGGCGGTAAGTGGAAGGAAGCAGCGCATGGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: PPASLKREQAELRMW*RARAVSGRKQRMGR Trigger: CCTCCCCATGCGCTGCTTCCTTCCACTTACCGCCCTCGCACGGCACCACATCCTGAGCTCTGCTTGTTCCCTCTTCAGACTGGCAGGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662443.1 |
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| CDS CCA 90 bp | GGAACAAGCAGAGCTCAGGATGTGGTGCCGTGCGAGGGCGGTAAGTaGAAGGAAGCAGCGCATGGGGAGGGTGCCTTGGAGACCAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: GTSRAQDVVPCEGGK*KEAAHGEGALETRG Trigger: TCCTCTGGTCTCCAAGGCACCCTCCCCATGCGCTGCTTCCTTCCACTTACCGCCCTCGCACGGCACCACATCCTGAGCTCTGCTTGTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656266.1 ENST00000662443.1 |
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| CDS TCA 90 bp | CTGGGTGGGTGCAACCCCAATGACCAAGGAGCTGGCCAAGCTGGTTaGGGTGAGGAGATACCGACCAGGGAGAAAGAAGGCAGGACATGG | + |
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Preference number: 5 (lower is better) Translates to: LGGCNPNDQGAGQAG*GEEIPTREKEGRTW Trigger: CCATGTCCTGCCTTCTTTCTCCCTGGTCGGTATCTCCTCACCTCAACCAGCTTGGCCAGCTCCTTGGTCATTGGGGTTGCACCCACCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS GCA 90 bp | AAAACTGCCAGTCTGAAGAGGGAACAAGCAGAGCTCAGGATGTGGTaGCGTGCGAGGGCGGTAAGTGGAAGGAAGCAGCGCATGGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: KTASLKREQAELRMW*RARAVSGRKQRMGR Trigger: CCTCCCCATGCGCTGCTTCCTTCCACTTACCGCCCTCGCACGGCACCACATCCTGAGCTCTGCTTGTTCCCTCTTCAGACTGGCAGTTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000656266.1 |
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| CDS CCA 90 bp | ACTGTACTGAGAGCTTCTGAGGTTGTGCGGAGCCAGGCACATGCCTaGGTGGGTGCAACCCCAATGACCAAGGAGCTGGCCAAGCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: TVLRASEVVRSQAHA*VGATPMTKELAKLV Trigger: AACCAGCTTGGCCAGCTCCTTGGTCATTGGGGTTGCACCCACCCAGGCATGTGCCTGGCTCCGCACAACCTCAGAAGCTCTCAGTACAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS CCA 90 bp | GTCAACTTTCCTGCAGCTTCCCTGTTCTGGGAGGCTGAGCTAGAGTaGAAACGACCAGCTTCCCCAAACAGGCAGCTCCGAGAAGGCGTC | + |
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Preference number: 5 (lower is better) Translates to: VNFPAASLFWEAELE*KRPASPNRQLREGV Trigger: GACGCCTTCTCGGAGCTGCCTGTTTGGGGAAGCTGGTCGTTTCCACTCTAGCTCAGCCTCCCAGAACAGGGAAGCTGCAGGAAAGTTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000400540.5 ENST00000656266.1 ENST00000662443.1 |
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| CDS TCA 90 bp | TTTCATTGGTTTCAACCTCTGGTCCTGCACTGTACTGAGAGCTTCTaGGGTTGTGCGGAGCCAGGCACATGCCTGGGTGGGTGCAACCCC | + |
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Preference number: 5 (lower is better) Translates to: FHWFQPLVLHCTESF*GCAEPGTCLGGCNP Trigger: GGGGTTGCACCCACCCAGGCATGTGCCTGGCTCCGCACAACCTCAGAAGCTCTCAGTACAGTGCAGGACCAGAGGTTGAAACCAATGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS CCA 90 bp | GGGAGAATTGATGTGGCAGGTCCTGAGCTGGGACATGAGAAGCCATaGCCAGGTCAGTCTTCCACGACTCTTCTTGTGCCAGTACCTTGT | + |
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Preference number: 5 (lower is better) Translates to: GRIDVAGPELGHEKP*PGQSSTTLLVPVPC Trigger: ACAAGGTACTGGCACAAGAAGAGTCGTGGAAGACTGACCTGGCCATGGCTTCTCATGTCCCAGCTCAGGACCTGCCACATCAATTCTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS CCA 90 bp | AATTTCACTCCACACGTGACGGCCAGAGGAAAGGGAGAATTGATGTaGCAGGTCCTGAGCTGGGACATGAGAAGCCATGGCCAGGTCAGT | + |
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Preference number: 5 (lower is better) Translates to: NFTPHVTARGKGELM*QVLSWDMRSHGQVS Trigger: ACTGACCTGGCCATGGCTTCTCATGTCCCAGCTCAGGACCTGCCACATCAATTCTCCCTTTCCTCTGGCCGTCACGTGTGGAGTGAAATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS TCA 90 bp | CATTTTCTGGACACAGCCAGAGAGGTGCACAGGGACAGCCGCTTCTaGGAATTTCACTCCACACGTGACGGCCAGAGGAAAGGGAGAATT | + |
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Preference number: 5 (lower is better) Translates to: HFLDTAREVHRDSRF*EFHSTRDGQRKGRI Trigger: AATTCTCCCTTTCCTCTGGCCGTCACGTGTGGAGTGAAATTCTCAGAAGCGGCTGTCCCTGTGCACCTCTCTGGCTGTGTCCAGAAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS TCA 90 bp | GTACTGGCTGTGGCTGTGCAGTGTCATGCCAGAAGTGACAAAAGATaGGACGTTGCCTGCAACTGTGAGGGAGCTTTGCCTTCATCTGTA | + |
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Preference number: 5 (lower is better) Translates to: VLAVAVQCHARSDKR*DVACNCEGALPSSV Trigger: TACAGATGAAGGCAAAGCTCCCTCACAGTTGCAGGCAACGTCTCATCTTTTGTCACTTCTGGCATGACACTGCACAGCCACAGCCAGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS CCA 90 bp | AGTCTTTCCATGTACTTTGAAAAGTGCAGTAATCCAAATGGCATGTaGCTCCCTGCCTCTGCATCTGGGCAGCTGAAGGTAAGGGCACTC | + |
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Preference number: 5 (lower is better) Translates to: SLSMYFEKCSNPNGM*LPASASGQLKVRAL Trigger: GAGTGCCCTTACCTTCAGCTGCCCAGATGCAGAGGCAGGGAGCCACATGCCATTTGGATTACTGCACTTTTCAAAGTACATGGAAAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000481738.2 |
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| CDS TCA 90 bp | TGTTGTGCTGAGAGAAATTCACAGAACCTTGTGGTGCCATCTGGCTaGGAGCTGACTGTTTGCATGATGCAGTTCTCACTTAAGGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: CCAERNSQNLVVPSG*ELTVCMMQFSLKEV Trigger: CACCTCCTTAAGTGAGAACTGCATCATGCAAACAGTCAGCTCTCAGCCAGATGGCACCACAAGGTTCTGTGAATTTCTCTCAGCACAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658535.1 |
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| CDS CCA 90 bp | GATCCAGGGTATATCATGATCATTGTCAATTTTCAGAACATCTCCTaGGCTGGTGAACTGACTCTTCTATCCAGGAGGCCGTTAGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: DPGYIMIIVNFQNIS*AGELTLLSRRPLVD Trigger: GTCCACTAACGGCCTCCTGGATAGAAGAGTCAGTTCACCAGCCCAGGAGATGTTCTGAAAATTGACAATGATCATGATATACCCTGGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000400540.5 ENST00000658535.1 |
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| CDS CCA 90 bp | CCTTCATCTGTAGAGACTCAGAAGTTCATCAAAGGACTTATTTACTaGTCTGGTTTCCATCTTTACTTTTGTCTGCCTTGGCCTCCATGT | + |
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Preference number: 5 (lower is better) Translates to: PSSVETQKFIKGLIY*SGFHLYFCLPWPPC Trigger: ACATGGAGGCCAAGGCAGACAAAAGTAAAGATGGAAACCAGACCAGTAAATAAGTCCTTTGATGAACTTCTGAGTCTCTACAGATGAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS CCA 90 bp | ATCTGTAGAGACTCAGAAGTTCATCAAAGGACTTATTTACTGGTCTaGTTTCCATCTTTACTTTTGTCTGCCTTGGCCTCCATGTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: ICRDSEVHQRTYLLV*FPSLLLSALASMCS Trigger: AGAACACATGGAGGCCAAGGCAGACAAAAGTAAAGATGGAAACCAGACCAGTAAATAAGTCCTTTGATGAACTTCTGAGTCTCTACAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS GCA 72 bp | CCAGCTTCCCCAAACAGGCAGCTCCGAGAAGGCGTCTaGTCCGCGTCTGCTCCCACTGAGCCAAGGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: PASPNRQLREGV*SASAPTEPRSS Trigger: GCTGGACCTTGGCTCAGTGGGAGCAGACGCGGAGCAGACGCCTTCTCGGAGCTGCCTGTTTGGGGAAGCTGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000400540.5 ENST00000656266.1 ENST00000662443.1 |
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| CDS CCA 72 bp | AGAGCTCAGGATGTGGTGCCGTGCGAGGGCGGTAAGTaGAAGGAAGCAGCGCATGGGGAGGGTGCCTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: RAQDVVPCEGGK*KEAAHGEGALE Trigger: CTCCAAGGCACCCTCCCCATGCGCTGCTTCCTTCCACTTACCGCCCTCGCACGGCACCACATCCTGAGCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000656266.1 ENST00000662443.1 |
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| CDS CCA 72 bp | CCTGCAGCTTCCCTGTTCTGGGAGGCTGAGCTAGAGTaGAAACGACCAGCTTCCCCAAACAGGCAGCTCCGA | + |
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Preference number: 6 (lower is better) Translates to: PAASLFWEAELE*KRPASPNRQLR Trigger: TCGGAGCTGCCTGTTTGGGGAAGCTGGTCGTTTCCACTCTAGCTCAGCCTCCCAGAACAGGGAAGCTGCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000400540.5 ENST00000656266.1 ENST00000662443.1 |
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| CDS TCA 72 bp | TTTCAACCTCTGGTCCTGCACTGTACTGAGAGCTTCTaGGGTTGTGCGGAGCCAGGCACATGCCTGGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: FQPLVLHCTESF*GCAEPGTCLGG Trigger: CCCACCCAGGCATGTGCCTGGCTCCGCACAACCTCAGAAGCTCTCAGTACAGTGCAGGACCAGAGGTTGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS CCA 72 bp | CCACACGTGACGGCCAGAGGAAAGGGAGAATTGATGTaGCAGGTCCTGAGCTGGGACATGAGAAGCCATGGC | + |
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Preference number: 6 (lower is better) Translates to: PHVTARGKGELM*QVLSWDMRSHG Trigger: GCCATGGCTTCTCATGTCCCAGCTCAGGACCTGCCACATCAATTCTCCCTTTCCTCTGGCCGTCACGTGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS TCA 72 bp | GACACAGCCAGAGAGGTGCACAGGGACAGCCGCTTCTaGGAATTTCACTCCACACGTGACGGCCAGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: DTAREVHRDSRF*EFHSTRDGQRK Trigger: TTTCCTCTGGCCGTCACGTGTGGAGTGAAATTCTCAGAAGCGGCTGTCCCTGTGCACCTCTCTGGCTGTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS TCA 72 bp | TGCAACCCCAATGACCAAGGAGCTGGCCAAGCTGGTTaGGGTGAGGAGATACCGACCAGGGAGAAAGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: CNPNDQGAGQAG*GEEIPTREKEG Trigger: GCCTTCTTTCTCCCTGGTCGGTATCTCCTCACCTCAACCAGCTTGGCCAGCTCCTTGGTCATTGGGGTTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS GCA 72 bp | AGCCATGGCCAGGTCAGTCTTCCACGACTCTTCTTGTaGCAGTACCTTGTGGAACTGCCTCTGCATCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SHGQVSLPRLFL*QYLVELPLHLG Trigger: GCCCAGATGCAGAGGCAGTTCCACAAGGTACTGGCACAAGAAGAGTCGTGGAAGACTGACCTGGCCATGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS CCA 72 bp | GATGTGGCAGGTCCTGAGCTGGGACATGAGAAGCCATaGCCAGGTCAGTCTTCCACGACTCTTCTTGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: DVAGPELGHEKP*PGQSSTTLLVP Trigger: TGGCACAAGAAGAGTCGTGGAAGACTGACCTGGCCATGGCTTCTCATGTCCCAGCTCAGGACCTGCCACATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS CAA 72 bp | CTCTACCGAGGAGGCTCTCCCTGCTTTGCTGTGCTTTaGTCAACTTTCCTGCAGCTTCCCTGTTCTGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: LYRGGSPCFAVL*STFLQLPCSGR Trigger: CCTCCCAGAACAGGGAAGCTGCAGGAAAGTTGACAAAAGCACAGCAAAGCAGGGAGAGCCTCCTCGGTAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000400540.5 ENST00000656266.1 ENST00000662443.1 |
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| CDS CAA 90 bp | TCTGAGAATTTCACTCCACACGTGACGGCCAGAGGAAAGGGAGAATaGATGTGGCAGGTCCTGAGCTGGGACATGAGAAGCCATGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: SENFTPHVTARGKGE*MWQVLSWDMRSHGQ Trigger: CTGGCCATGGCTTCTCATGTCCCAGCTCAGGACCTGCCACATCAATTCTCCCTTTCCTCTGGCCGTCACGTGTGGAGTGAAATTCTCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS TCA 72 bp | TGTCAACTTTCCTGCAGCTTCCCTGTTCTGGGAGGCTaGGCTAGAGTGGAAACGACCAGCTTCCCCAAACAG | + |
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Preference number: 6 (lower is better) Translates to: CQLSCSFPVLGG*ARVETTSFPKQ Trigger: CTGTTTGGGGAAGCTGGTCGTTTCCACTCTAGCTCAGCCTCCCAGAACAGGGAAGCTGCAGGAAAGTTGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000400540.5 ENST00000656266.1 ENST00000662443.1 |
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| CDS CAA 72 bp | AGAAGCCATGGCCAGGTCAGTCTTCCACGACTCTTCTaGTGCCAGTACCTTGTGGAACTGCCTCTGCATCTG | + |
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Preference number: 6 (lower is better) Translates to: RSHGQVSLPRLF*CQYLVELPLHL Trigger: CAGATGCAGAGGCAGTTCCACAAGGTACTGGCACAAGAAGAGTCGTGGAAGACTGACCTGGCCATGGCTTCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400540.5 |
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| CDS TCA 72 bp | GTGGCTGTGCAGTGTCATGCCAGAAGTGACAAAAGATaGGACGTTGCCTGCAACTGTGAGGGAGCTTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: VAVQCHARSDKR*DVACNCEGALP Trigger: AGGCAAAGCTCCCTCACAGTTGCAGGCAACGTCTCATCTTTTGTCACTTCTGGCATGACACTGCACAGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS GCA 72 bp | TGGGCAAAGGCAGAGATACCGTACTGGCTGTGGCTGTaGAGTGTCATGCCAGAAGTGACAAAAGATGAGACG | + |
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Preference number: 6 (lower is better) Translates to: WAKAEIPYWLWL*SVMPEVTKDET Trigger: CGTCTCATCTTTTGTCACTTCTGGCATGACACTGCACAGCCACAGCCAGTACGGTATCTCTGCCTTTGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS GCA 72 bp | TTCAGAGCTGACACCCCAAACACCTCTATAACCACCTaGCAGTCTGAAGAGGGAACAAGCAGAGCTCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: FRADTPNTSITT*QSEEGTSRAQD Trigger: ATCCTGAGCTCTGCTTGTTCCCTCTTCAGACTGGCAGGTGGTTATAGAGGTGTTTGGGGTGTCAGCTCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000662443.1 |
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| CDS CAA 72 bp | TGCAGTGTCATGCCAGAAGTGACAAAAGATGAGACGTaGCCTGCAACTGTGAGGGAGCTTTGCCTTCATCTG | + |
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Preference number: 6 (lower is better) Translates to: CSVMPEVTKDET*PATVRELCLHL Trigger: CAGATGAAGGCAAAGCTCCCTCACAGTTGCAGGCAACGTCTCATCTTTTGTCACTTCTGGCATGACACTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS TCA 72 bp | GATCATTGTCAATTTTCAGAACATCTCCTGGGCTGGTaGACTGACTCTTCTATCCAGGAGGCCGTTAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: DHCQFSEHLLGW*TDSSIQEAVSG Trigger: TCCACTAACGGCCTCCTGGATAGAAGAGTCAGTTCACCAGCCCAGGAGATGTTCTGAAAATTGACAATGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000400540.5 ENST00000658535.1 |
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| CDS TCA 72 bp | GAGAGAAATTCACAGAACCTTGTGGTGCCATCTGGCTaGGAGCTGACTGTTTGCATGATGCAGTTCTCACTT | + |
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Preference number: 6 (lower is better) Translates to: ERNSQNLVVPSG*ELTVCMMQFSL Trigger: AAGTGAGAACTGCATCATGCAAACAGTCAGCTCTCAGCCAGATGGCACCACAAGGTTCTGTGAATTTCTCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658535.1 |
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| CDS CCA 72 bp | TATATCATGATCATTGTCAATTTTCAGAACATCTCCTaGGCTGGTGAACTGACTCTTCTATCCAGGAGGCCG | + |
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Preference number: 6 (lower is better) Translates to: YIMIIVNFQNIS*AGELTLLSRRP Trigger: CGGCCTCCTGGATAGAAGAGTCAGTTCACCAGCCCAGGAGATGTTCTGAAAATTGACAATGATCATGATATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000400540.5 ENST00000658535.1 |
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| CDS CCA 72 bp | GACTCAGAAGTTCATCAAAGGACTTATTTACTGGTCTaGTTTCCATCTTTACTTTTGTCTGCCTTGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: DSEVHQRTYLLV*FPSLLLSALAS Trigger: GGAGGCCAAGGCAGACAAAAGTAAAGATGGAAACCAGACCAGTAAATAAGTCCTTTGATGAACTTCTGAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS CAA 90 bp | AGGACTTATTTACTGGTCTGGTTTCCATCTTTACTTTTGTCTGCCTaGGCCTCCATGTGTTCTGGAAACGTATCAGTGATAACTTCTAGC | + |
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Preference number: 6 (lower is better) Translates to: RTYLLVWFPSLLLSA*ASMCSGNVSVITSS Trigger: GCTAGAAGTTATCACTGATACGTTTCCAGAACACATGGAGGCCAAGGCAGACAAAAGTAAAGATGGAAACCAGACCAGTAAATAAGTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS CAA 90 bp | GTTCATCAAAGGACTTATTTACTGGTCTGGTTTCCATCTTTACTTTaGTCTGCCTTGGCCTCCATGTGTTCTGGAAACGTATCAGTGATA | + |
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Preference number: 6 (lower is better) Translates to: VHQRTYLLVWFPSLL*SALASMCSGNVSVI Trigger: TATCACTGATACGTTTCCAGAACACATGGAGGCCAAGGCAGACAAAAGTAAAGATGGAAACCAGACCAGTAAATAAGTCCTTTGATGAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000481738.2 ENST00000656266.1 ENST00000662443.1 |
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| CDS TCA 72 bp | TTGTATAGAGAAGTATTCTGGATCCAGGGTATATCATaGTCATTGTCAATTTTCAGAACATCTCCTGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LYREVFWIQGIS*SLSIFRTSPGL Trigger: CAGCCCAGGAGATGTTCTGAAAATTGACAATGATCATGATATACCCTGGATCCAGAATACTTCTCTATACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000400540.5 ENST00000658535.1 |
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