Pregenerated sensors for LINC00540 (Homo sapiens)
Ensembl gene IDs: ENSG00000276476Ensembl transcript IDs: ENST00000611481.1, ENST00000616974.1, ENST00000631321.1, ENST00000655363.1, ENST00000656522.1, ENST00000657205.1, ENST00000658741.1, ENST00000659301.1
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAAGGCGCCAGAAGAGAGATGGCTTTCCCCCGAAGTCTGGCCGCTTaGCGGCCCAGGTGCTCCTCCGACTGCCCCAACCAAACTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: KGARREMAFPRSLAA*RPRCSSDCPNQTPP Trigger: TGGAGGAGTTTGGTTGGGGCAGTCGGAGGAGCACCTGGGCCGCCAAGCGGCCAGACTTCGGGGGAAAGCCATCTCTCTTCTGGCGCCTTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000631321.1 ENST00000657205.1 |
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| CDS GCA 90 bp | CTTCCTTTCCAAATGCTACGGCCAGCTCTGCCCACTGGGGATCCCTaGATGGCTCCTAGAACCCTGGTACTGATGCAATCACTGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: LPFQMLRPALPTGDP*MAPRTLVLMQSLAK Trigger: CTTGGCCAGTGATTGCATCAGTACCAGGGTTCTAGGAGCCATGCAGGGATCCCCAGTGGGCAGAGCTGGCCGTAGCATTTGGAAAGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 90 bp | AGGAAGGAAGGAAGGAAGGAAGGAAAAGAGGATGGGAACACAGGGTaGAATGAGGAAGGGTACTCTAGCCTGCCTGGGCAGGTCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: RKEGRKEGKEDGNTG*NEEGYSSLPGQVTS Trigger: GCTGGTGACCTGCCCAGGCAGGCTAGAGTACCCTTCCTCATTGCACCCTGTGTTCCCATCCTCTTTTCCTTCCTTCCTTCCTTCCTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 90 bp | TGTGCTTACAGGTTGCAGAGGCAGTGCAGAAGTCAAACACAACCTTaGATGCGTCATCGCTTCTGGCTCTGCAGGCCCTCTCTGGACCAG | + |
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Preference number: 5 (lower is better) Translates to: CAYRLQRQCRSQTQP*MRHRFWLCRPSLDQ Trigger: CTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCAACCTGTAAGCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 90 bp | CTTACAGGTTGCAGAGGCAGTGCAGAAGTCAAACACAACCTTGGATaGGTCATCGCTTCTGGCTCTGCAGGCCCTCTCTGGACCAGTGTT | + |
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Preference number: 5 (lower is better) Translates to: LTGCRGSAEVKHNLG*VIASGSAGPLWTSV Trigger: AACACTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCAACCTGTAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 90 bp | CACAACCTTGGATGCGTCATCGCTTCTGGCTCTGCAGGCCCTCTCTaGACCAGTGTTTTCTGCTGTCCTTCCTTCTGTGCCTACTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: HNLGCVIASGSAGPL*TSVFCCPSFCAYLC Trigger: ACACAAGTAGGCACAGAAGGAAGGACAGCAGAAAACACTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 90 bp | AGGCAGTGCAGAAGTCAAACACAACCTTGGATGCGTCATCGCTTCTaGCTCTGCAGGCCCTCTCTGGACCAGTGTTTTCTGCTGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: RQCRSQTQPWMRHRF*LCRPSLDQCFLLSF Trigger: GAAGGACAGCAGAAAACACTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 90 bp | TATTTGACAAGTAGAGGCACATCTCTACCACGGGGCCCCCATCTGTaGGTGTGCATGCGTTTCAGCCATGAGAGTGACAGAGGCCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: YLTSRGTSLPRGPHL*VCMRFSHESDRGQN Trigger: GTTCTGGCCTCTGTCACTCTCATGGCTGAAACGCATGCACACCCACAGATGGGGGCCCCGTGGTAGAGATGTGCCTCTACTTGTCAAATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 90 bp | CAATCCAACTCTGTTGAATCCTTGTCCTACTCCCATGGCGTGCAATaGGGGTGTGACTTGCTTCTCCAGTGCCCCGCTGCTCAAACCTCT | + |
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Preference number: 5 (lower is better) Translates to: QSNSVESLSYSHGVQ*GCDLLLQCPAAQTS Trigger: AGAGGTTTGAGCAGCGGGGCACTGGAGAAGCAAGTCACACCCCCATTGCACGCCATGGGAGTAGGACAAGGATTCAACAGAGTTGGATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000631321.1 |
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| CDS GCA 90 bp | TGCAGAAGTCAAACACAACCTTGGATGCGTCATCGCTTCTGGCTCTaGAGGCCCTCTCTGGACCAGTGTTTTCTGCTGTCCTTCCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: CRSQTQPWMRHRFWL*RPSLDQCFLLSFLL Trigger: CAGAAGGAAGGACAGCAGAAAACACTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS TCA 90 bp | GGGAACAGGCTGTTGCTTTGCACAGGGTGGGCACTCCACGCATATTaGTTCTTTCATTCTCCTGACAAGGCGGGCAGCAAAAGCAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: GNRLLLCTGWALHAY*FFHSPDKAGSKSKK Trigger: TTTCTTGCTTTTGCTGCCCGCCTTGTCAGGAGAATGAAAGAATCAATATGCGTGGAGTGCCCACCCTGTGCAAAGCAACAGCCTGTTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611481.1 |
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| CDS TCA 90 bp | GCCCAGAAGCAAGTGGGGCCACAGGCCTCAGAGCTGATGTCCACGTaGTTCCTTTATTCTCTTTCCACCACTGATCTCAAATTACAGTTC | + |
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Preference number: 5 (lower is better) Translates to: AQKQVGPQASELMST*FLYSLSTTDLKLQF Trigger: GAACTGTAATTTGAGATCAGTGGTGGAAAGAGAATAAAGGAATCACGTGGACATCAGCTCTGAGGCCTGTGGCCCCACTTGCTTCTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 90 bp | TACTTTCTGAACTGGCTCAGATGTGCTTACAGGTTGCAGAGGCAGTaGAGAAGTCAAACACAACCTTGGATGCGTCATCGCTTCTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: YFLNWLRCAYRLQRQ*RSQTQPWMRHRFWL Trigger: GAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCAACCTGTAAGCACATCTGAGCCAGTTCAGAAAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 90 bp | CTTGGCCTGGATTCTTGCCTTCTTCGTCTAAAGGGAACAGGCTGTTaGTTTGCACAGGGTGGGCACTCCACGCATATTGATTCTTTCATT | + |
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Preference number: 5 (lower is better) Translates to: LGLDSCLLRLKGTGC*FAQGGHSTHIDSFI Trigger: AATGAAAGAATCAATATGCGTGGAGTGCCCACCCTGTGCAAAGCAACAGCCTGTTCCCTTTAGACGAAGAAGGCAAGAATCCAGGCCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611481.1 |
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| CDS GCA 90 bp | CAGTGTTTTCTGCTGTCCTTCCTTCTGTGCCTACTTGTGTCCCTTTaGTGGGAACTGACTCATCCAGAGCCTTTGGATTTGCACTTGATG | + |
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Preference number: 5 (lower is better) Translates to: QCFLLSFLLCLLVSL*WELTHPEPLDLHLM Trigger: CATCAAGTGCAAATCCAAAGGCTCTGGATGAGTCAGTTCCCAGCAAAGGGACACAAGTAGGCACAGAAGGAAGGACAGCAGAAAACACTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 90 bp | TGTTTTCTGCTGTCCTTCCTTCTGTGCCTACTTGTGTCCCTTTGCTaGGAACTGACTCATCCAGAGCCTTTGGATTTGCACTTGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: CFLLSFLLCLLVSLC*ELTHPEPLDLHLMP Trigger: AGGCATCAAGTGCAAATCCAAAGGCTCTGGATGAGTCAGTTCCCAGCAAAGGGACACAAGTAGGCACAGAAGGAAGGACAGCAGAAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS TCA 90 bp | GATGATAAGAGGCCATTTCTGATATACTTTGGTTTTCCTACTTTCTaGACTGGCTCAGATGTGCTTACAGGTTGCAGAGGCAGTGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: DDKRPFLIYFGFPTF*TGSDVLTGCRGSAE Trigger: TTCTGCACTGCCTCTGCAACCTGTAAGCACATCTGAGCCAGTTCAGAAAGTAGGAAAACCAAAGTATATCAGAAATGGCCTCTTATCATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS TCA 90 bp | CTATTTGTACTGTGTACATCATCAGTCTTAGCGCATCTCCATCCTTaGTGCTGCATATTGGTAGGTGAAAGAAGCCACTCCAAAAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: LFVLCTSSVLAHLHP*CCILVGERSHSKKA Trigger: AGCCTTTTTGGAGTGGCTTCTTTCACCTACCAATATGCAGCATCAAGGATGGAGATGCGCTAAGACTGATGATGTACACAGTACAAATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS GCA 90 bp | TGCATATTGGTAGGTGAAAGAAGCCACTCCAAAAAGGCTACATTCTaGATGATTCCAATTATCCAATTCTTGTCCTACTCCCATGGCGTG | + |
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Preference number: 5 (lower is better) Translates to: CILVGERSHSKKATF*MIPIIQFLSYSHGV Trigger: CACGCCATGGGAGTAGGACAAGAATTGGATAATTGGAATCATGCAGAATGTAGCCTTTTTGGAGTGGCTTCTTTCACCTACCAATATGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS TCA 90 bp | AGCAATCCAACTCTGTTGAATCTGAAGACATTGGCAAATCATTCCTaGCACTGTGCAATTTCACTTGGTAAATCCAGAGAATGTGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: SNPTLLNLKTLANHS*HCAISLGKSRECVS Trigger: GCTGACACATTCTCTGGATTTACCAAGTGAAATTGCACAGTGTCAGGAATGATTTGCCAATGTCTTCAGATTCAACAGAGTTGGATTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000658741.1 |
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| CDS CAA 72 bp | CAGAAGAGAGATGGCTTTCCCCCGAAGTCTGGCCGCTaGGCGGCCCAGGTGCTCCTCCGACTGCCCCAACCA | + |
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Preference number: 6 (lower is better) Translates to: QKRDGFPPKSGR*AAQVLLRLPQP Trigger: TGGTTGGGGCAGTCGGAGGAGCACCTGGGCCGCCAAGCGGCCAGACTTCGGGGGAAAGCCATCTCTCTTCTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000631321.1 ENST00000657205.1 |
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| CDS CCA 72 bp | AGAAGAGAGATGGCTTTCCCCCGAAGTCTGGCCGCTTaGCGGCCCAGGTGCTCCTCCGACTGCCCCAACCAA | + |
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Preference number: 6 (lower is better) Translates to: RREMAFPRSLAA*RPRCSSDCPNQ Trigger: TTGGTTGGGGCAGTCGGAGGAGCACCTGGGCCGCCAAGCGGCCAGACTTCGGGGGAAAGCCATCTCTCTTCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000631321.1 ENST00000657205.1 |
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| CDS CAA 72 bp | GTGCTCCTCCGACTGCCCCAACCAAACTCCTCCACGTaGCACTGGGGTCAGCTCTCAGCTGACCTTGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: VLLRLPQPNSST*HWGQLSADLAG Trigger: GCCGGCAAGGTCAGCTGAGAGCTGACCCCAGTGCAACGTGGAGGAGTTTGGTTGGGGCAGTCGGAGGAGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000631321.1 ENST00000657205.1 |
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| CDS GCA 72 bp | TGCTCCTCCGACTGCCCCAACCAAACTCCTCCACGTTaGACTGGGGTCAGCTCTCAGCTGACCTTGCCGGCA | + |
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Preference number: 6 (lower is better) Translates to: CSSDCPNQTPPR*TGVSSQLTLPA Trigger: TGCCGGCAAGGTCAGCTGAGAGCTGACCCCAGTGCAACGTGGAGGAGTTTGGTTGGGGCAGTCGGAGGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000631321.1 ENST00000657205.1 |
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| CDS GCA 72 bp | GGCACATCTCTACCACGGGGCCCCCATCTGTGGGTGTaGATGCGTTTCAGCCATGAGAGTGACAGAGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: GTSLPRGPHLWV*MRFSHESDRGQ Trigger: CTGGCCTCTGTCACTCTCATGGCTGAAACGCATGCACACCCACAGATGGGGGCCCCGTGGTAGAGATGTGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 72 bp | GGATGCGTCATCGCTTCTGGCTCTGCAGGCCCTCTCTaGACCAGTGTTTTCTGCTGTCCTTCCTTCTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: GCVIASGSAGPL*TSVFCCPSFCA Trigger: GGCACAGAAGGAAGGACAGCAGAAAACACTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 72 bp | TGCAGAGGCAGTGCAGAAGTCAAACACAACCTTGGATaGGTCATCGCTTCTGGCTCTGCAGGCCCTCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: CRGSAEVKHNLG*VIASGSAGPLW Trigger: CCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 72 bp | CCAACTCTGTTGAATCCTTGTCCTACTCCCATGGCGTaGAATGGGGGTGTGACTTGCTTCTCCAGTGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: PTLLNPCPTPMA*NGGVTCFSSAP Trigger: CGGGGCACTGGAGAAGCAAGTCACACCCCCATTGCACGCCATGGGAGTAGGACAAGGATTCAACAGAGTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000631321.1 |
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| CDS CCA 72 bp | AGTAGAGGCACATCTCTACCACGGGGCCCCCATCTGTaGGTGTGCATGCGTTTCAGCCATGAGAGTGACAGA | + |
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Preference number: 6 (lower is better) Translates to: SRGTSLPRGPHL*VCMRFSHESDR Trigger: TCTGTCACTCTCATGGCTGAAACGCATGCACACCCACAGATGGGGGCCCCGTGGTAGAGATGTGCCTCTACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CAA 72 bp | CAGGTTGCAGAGGCAGTGCAGAAGTCAAACACAACCTaGGATGCGTCATCGCTTCTGGCTCTGCAGGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: QVAEAVQKSNTT*DASSLLALQAL Trigger: GAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCAACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 72 bp | CAAACACAACCTTGGATGCGTCATCGCTTCTGGCTCTaGAGGCCCTCTCTGGACCAGTGTTTTCTGCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: QTQPWMRHRFWL*RPSLDQCFLLS Trigger: GGACAGCAGAAAACACTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 72 bp | AGGTTGCAGAGGCAGTGCAGAAGTCAAACACAACCTTaGATGCGTCATCGCTTCTGGCTCTGCAGGCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: RLQRQCRSQTQP*MRHRFWLCRPS Trigger: AGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCAACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CAA 90 bp | ATGTGCTTACAGGTTGCAGAGGCAGTGCAGAAGTCAAACACAACCTaGGATGCGTCATCGCTTCTGGCTCTGCAGGCCCTCTCTGGACCA | + |
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Preference number: 6 (lower is better) Translates to: MCLQVAEAVQKSNTT*DASSLLALQALSGP Trigger: TGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCAACCTGTAAGCACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CAA 72 bp | GTGTCCCTTTGCTGGGAACTGACTCATCCAGAGCCTTaGGATTTGCACTTGATGCCTGGGTCTGGACTCTGC | + |
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Preference number: 6 (lower is better) Translates to: VSLCWELTHPEP*DLHLMPGSGLC Trigger: GCAGAGTCCAGACCCAGGCATCAAGTGCAAATCCAAAGGCTCTGGATGAGTCAGTTCCCAGCAAAGGGACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS TCA 72 bp | CAATCACTGGCCAAGTGGCCCAAATGGAAAAGTGGGTaGGGGGAGACTTCAGACGCTCACACAGCACCTAAT | + |
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Preference number: 6 (lower is better) Translates to: QSLAKWPKWKSG*GETSDAHTAPN Trigger: ATTAGGTGCTGTGTGAGCGTCTGAAGTCTCCCCTCACCCACTTTTCCATTTGGGCCACTTGGCCAGTGATTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 72 bp | GGAACACAGGGTGCAATGAGGAAGGGTACTCTAGCCTaGCTGGGCAGGTCACCAGCAAATGTCTATAGAAAG | + |
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Preference number: 6 (lower is better) Translates to: GTQGAMRKGTLA*LGRSPANVYRK Trigger: CTTTCTATAGACATTTGCTGGTGACCTGCCCAGGCAGGCTAGAGTACCCTTCCTCATTGCACCCTGTGTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 72 bp | AGAAGTCAAACACAACCTTGGATGCGTCATCGCTTCTaGCTCTGCAGGCCCTCTCTGGACCAGTGTTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: RSQTQPWMRHRF*LCRPSLDQCFL Trigger: CAGAAAACACTGGTCCAGAGAGGGCCTGCAGAGCCAGAAGCGATGACGCATCCAAGGTTGTGTTTGACTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CAA 72 bp | CCCTCCGCAGTGTGGGTGAATCTTACCCACGTGGGCTaGGAGAATGAGTGCAAGGTTTTGAGTACAAGTAGC | + |
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Preference number: 6 (lower is better) Translates to: PSAVWVNLTHVG*ENECKVLSTSS Trigger: GCTACTTGTACTCAAAACCTTGCACTCATTCTCCAAGCCCACGTGGGTAAGATTCACCCACACTGCGGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000631321.1 ENST00000657205.1 |
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| CDS TCA 72 bp | CTGTTGCTTTGCACAGGGTGGGCACTCCACGCATATTaGTTCTTTCATTCTCCTGACAAGGCGGGCAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: LLLCTGWALHAY*FFHSPDKAGSK Trigger: TTTGCTGCCCGCCTTGTCAGGAGAATGAAAGAATCAATATGCGTGGAGTGCCCACCCTGTGCAAAGCAACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611481.1 |
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| CDS TCA 72 bp | CCTGAGGCATATTTCCGAATTTGGAGTCAGTCTATTTaGCAAGTAGAGGCACATCTCTACCACGGGGCCCCC | + |
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Preference number: 6 (lower is better) Translates to: PEAYFRIWSQSI*QVEAHLYHGAP Trigger: GGGGGCCCCGTGGTAGAGATGTGCCTCTACTTGTCAAATAGACTGACTCCAAATTCGGAAATATGCCTCAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 72 bp | AACTGGCTCAGATGTGCTTACAGGTTGCAGAGGCAGTaGAGAAGTCAAACACAACCTTGGATGCGTCATCGC | + |
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Preference number: 6 (lower is better) Translates to: NWLRCAYRLQRQ*RSQTQPWMRHR Trigger: GCGATGACGCATCCAAGGTTGTGTTTGACTTCTGCACTGCCTCTGCAACCTGTAAGCACATCTGAGCCAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CCA 72 bp | CTGTCCTTCCTTCTGTGCCTACTTGTGTCCCTTTGCTaGGAACTGACTCATCCAGAGCCTTTGGATTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: LSFLLCLLVSLC*ELTHPEPLDLH Trigger: GTGCAAATCCAAAGGCTCTGGATGAGTCAGTTCCCAGCAAAGGGACACAAGTAGGCACAGAAGGAAGGACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS GCA 72 bp | GATTCTTGCCTTCTTCGTCTAAAGGGAACAGGCTGTTaGTTTGCACAGGGTGGGCACTCCACGCATATTGAT | + |
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Preference number: 6 (lower is better) Translates to: DSCLLRLKGTGC*FAQGGHSTHID Trigger: ATCAATATGCGTGGAGTGCCCACCCTGTGCAAAGCAACAGCCTGTTCCCTTTAGACGAAGAAGGCAAGAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000611481.1 |
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| CDS CAA 72 bp | CTTTGCTGGGAACTGACTCATCCAGAGCCTTTGGATTaGCACTTGATGCCTGGGTCTGGACTCTGCTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: LCWELTHPEPLD*HLMPGSGLCFC Trigger: ACAAAAGCAGAGTCCAGACCCAGGCATCAAGTGCAAATCCAAAGGCTCTGGATGAGTCAGTTCCCAGCAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CAA 90 bp | TTGCTAAATCCTCAGACACAAAGAAAGCTAAATGAGAGACAAAGTTaGGCGGGAGGATCAGAGAAGCCCGGGCTCCGTGGCAGGTTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LLNPQTQRKLNERQS*AGGSEKPGLRGRFS Trigger: AGAAAACCTGCCACGGAGCCCGGGCTTCTCTGATCCTCCCGCCAAACTTTGTCTCTCATTTAGCTTTCTTTGTGTCTGAGGATTTAGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000616974.1 ENST00000655363.1 ENST00000658741.1 |
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| CDS CAA 72 bp | CAATCCAACTCTGTTGAATCCCCTTGGCCTGGATTCTaGCCTTCTTCGTCTAAAGGGAACAGGCTGTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: QSNSVESPWPGF*PSSSKGNRLLL Trigger: AAGCAACAGCCTGTTCCCTTTAGACGAAGAAGGCAAGAATCCAGGCCAAGGGGATTCAACAGAGTTGGATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611481.1 |
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| CDS CAA 90 bp | CACTCCAAAAAGGCTACATTCTGCATGATTCCAATTATCCAATTCTaGTCCTACTCCCATGGCGTGCAATGGGGGTGTGACTTGCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: HSKKATFCMIPIIQF*SYSHGVQWGCDLLL Trigger: GAGAAGCAAGTCACACCCCCATTGCACGCCATGGGAGTAGGACAAGAATTGGATAATTGGAATCATGCAGAATGTAGCCTTTTTGGAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS TCA 72 bp | CTGTGTACATCATCAGTCTTAGCGCATCTCCATCCTTaGTGCTGCATATTGGTAGGTGAAAGAAGCCACTCC | + |
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Preference number: 6 (lower is better) Translates to: LCTSSVLAHLHP*CCILVGERSHS Trigger: GGAGTGGCTTCTTTCACCTACCAATATGCAGCATCAAGGATGGAGATGCGCTAAGACTGATGATGTACACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS GCA 72 bp | AATCCAACTCTGTTGAATCCCCTTGGCCTGGATTCTTaGCTTCTTCGTCTAAAGGGAACAGGCTGTTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: NPTLLNPLGLDS*LLRLKGTGCCF Trigger: AAAGCAACAGCCTGTTCCCTTTAGACGAAGAAGGCAAGAATCCAGGCCAAGGGGATTCAACAGAGTTGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000611481.1 |
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| CDS CAA 72 bp | AAGGCTACATTCTGCATGATTCCAATTATCCAATTCTaGTCCTACTCCCATGGCGTGCAATGGGGGTGTGAC | + |
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Preference number: 6 (lower is better) Translates to: KATFCMIPIIQF*SYSHGVQWGCD Trigger: GTCACACCCCCATTGCACGCCATGGGAGTAGGACAAGAATTGGATAATTGGAATCATGCAGAATGTAGCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS TCA 72 bp | AGCGCATCTCCATCCTTGATGCTGCATATTGGTAGGTaGAAGAAGCCACTCCAAAAAGGCTACATTCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: SASPSLMLHIGR*KKPLQKGYILH Trigger: ATGCAGAATGTAGCCTTTTTGGAGTGGCTTCTTTCACCTACCAATATGCAGCATCAAGGATGGAGATGCGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS GCA 72 bp | ACTTTGGTTTTCCTACTTTCTGAACTGGCTCAGATGTaGTTACAGGTTGCAGAGGCAGTGCAGAAGTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: TLVFLLSELAQM*LQVAEAVQKSN Trigger: GTTTGACTTCTGCACTGCCTCTGCAACCTGTAAGCACATCTGAGCCAGTTCAGAAAGTAGGAAAACCAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CAA 90 bp | CATTATGGAGAAATCCGTAATTTTATTCTCAGCAATCCAACTCTGTaGAATCCTTGTCCTACTCCCATGGCGTGCAATGGGGGTGTGACT | + |
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Preference number: 6 (lower is better) Translates to: HYGEIRNFILSNPTL*NPCPTPMACNGGVT Trigger: AGTCACACCCCCATTGCACGCCATGGGAGTAGGACAAGGATTCAACAGAGTTGGATTGCTGAGAATAAAATTACGGATTTCTCCATAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000631321.1 |
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| CDS TCA 72 bp | AAATCCGTAATTTTATTCTCAGCAATCCAACTCTGTTaGATCCTTGTCCTACTCCCATGGCGTGCAATGGGG | + |
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Preference number: 6 (lower is better) Translates to: KSVILFSAIQLC*ILVLLPWRAMG Trigger: CCCCATTGCACGCCATGGGAGTAGGACAAGGATTCAACAGAGTTGGATTGCTGAGAATAAAATTACGGATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631321.1 |
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| CDS TCA 72 bp | AAATCCGTAATTTTATTCTCAGCAATCCAACTCTGTTaGATCCCTGTAAATCTAGCGGGCAGTGAGGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: KSVILFSAIQLC*IPVNLAGSEGV Trigger: CACCCCCTCACTGCCCGCTAGATTTACAGGGATTCAACAGAGTTGGATTGCTGAGAATAAAATTACGGATTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656522.1 |
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| CDS CAA 72 bp | GAAATCCGTAATTTTATTCTCAGCAATCCAACTCTGTaGAATCCTTGTCCTACTCCCATGGCGTGCAATGGG | + |
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Preference number: 6 (lower is better) Translates to: EIRNFILSNPTL*NPCPTPMACNG Trigger: CCCATTGCACGCCATGGGAGTAGGACAAGGATTCAACAGAGTTGGATTGCTGAGAATAAAATTACGGATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000631321.1 |
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| CDS CAA 72 bp | CCAAACCACAGCACCATCAATGCTGTGATTTATGCTTaGAAAACACTCCAAGTGGAGCAGCCACACATTTAT | + |
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Preference number: 6 (lower is better) Translates to: PNHSTINAVIYA*KTLQVEQPHIY Trigger: ATAAATGTGTGGCTGCTCCACTTGGAGTGTTTTCAAAGCATAAATCACAGCATTGATGGTGCTGTGGTTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS TCA 72 bp | GTGAAAGAAGCCACTCCAAAAAGGCTACATTCTGCATaGTTCCAATTATCCAATTCTTGTCCTACTCCCATG | + |
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Preference number: 6 (lower is better) Translates to: VKEATPKRLHSA*FQLSNSCPTPM Trigger: CATGGGAGTAGGACAAGAATTGGATAATTGGAATCATGCAGAATGTAGCCTTTTTGGAGTGGCTTCTTTCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS GCA 72 bp | GTAGGTGAAAGAAGCCACTCCAAAAAGGCTACATTCTaGATGATTCCAATTATCCAATTCTTGTCCTACTCC | + |
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Preference number: 6 (lower is better) Translates to: VGERSHSKKATF*MIPIIQFLSYS Trigger: GGAGTAGGACAAGAATTGGATAATTGGAATCATGCAGAATGTAGCCTTTTTGGAGTGGCTTCTTTCACCTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000657205.1 |
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| CDS TCA 72 bp | GATGTCCACGTGATTCCTTTATTCTCTTTCCACCACTaGTCTCAAATTACAGTTCCTGTGCAGATATTTAAT | + |
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Preference number: 6 (lower is better) Translates to: DVHVIPLFSFHH*SQITVPVQIFN Trigger: ATTAAATATCTGCACAGGAACTGTAATTTGAGATCAGTGGTGGAAAGAGAATAAAGGAATCACGTGGACATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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| CDS CAA 72 bp | TTTCCATGTGAAAAATTGAGGATATTCTTCTCCAGCTaGATTGTTAACCATCAACTAATTTCTCGCTACCCT | + |
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Preference number: 6 (lower is better) Translates to: FPCEKLRIFFSS*IVNHQLISRYP Trigger: AGGGTAGCGAGAAATTAGTTGATGGTTAACAATCAAGCTGGAGAAGAATATCCTCAATTTTTCACATGGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000616974.1 ENST00000631321.1 ENST00000655363.1 ENST00000658741.1 ENST00000659301.1 |
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