Pregenerated sensors for LINC00538 (Homo sapiens)

Ensembl gene IDs: ENSG00000281664

Ensembl transcript IDs: ENST00000626109.1

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATGGCAGGAAGGGTCATATGCCTCAGGAAATCTTCACAGGCAGATTaGAATAGGGAGCCACGCAGCCACGCTCAGAAGCACATTGCTGCC	+
Preference number: 5 (lower is better) Translates to: MAGRVICLRKSSQAD*NREPRSHAQKHIAA Trigger: GGCAGCAATGTGCTTCTGAGCGTGGCTGCGTGGCTCCCTATTTCAATCTGCCTGTGAAGATTTCCTGAGGCATATGACCCTTCCTGCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS TCA 90 bp	GTACCTTCTTCTGCCTGGTATCACTCTCTCCTCTTTGAGAGTGTTTaGGTCGGATCCTCTCAGCCAAGTGGCAGATGGAGAAGTTGTTTG	+
Preference number: 5 (lower is better) Translates to: VPSSAWYHSLLFESV*VGSSQPSGRWRSCL Trigger: CAAACAACTTCTCCATCTGCCACTTGGCTGAGAGGATCCGACTCAAACACTCTCAAAGAGGAGAGAGTGATACCAGGCAGAAGAAGGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS GCA 90 bp	TCAGACAATAGATCAGGTAGACACGTCCAGACACAAACCCCTTGCTaGTTCCTGTACCTTCTTCTGCCTGGTATCACTCTCTCCTCTTTG	+
Preference number: 5 (lower is better) Translates to: SDNRSGRHVQTQTPC*FLYLLLPGITLSSL Trigger: CAAAGAGGAGAGAGTGATACCAGGCAGAAGAAGGTACAGGAAGCAGCAAGGGGTTTGTGTCTGGACGTGTCTACCTGATCTATTGTCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS CCA 90 bp	TTGGTGATGTCACTTTCCAGTCTCTCGGTTACTCCATCTGTACAATaGAAAGAATATATCCTATTCTTAGCAACTGAGTGTGAAGATGCT	+
Preference number: 5 (lower is better) Translates to: LVMSLSSLSVTPSVQ*KEYILFLATECEDA Trigger: AGCATCTTCACACTCAGTTGCTAAGAATAGGATATATTCTTTCCATTGTACAGATGGAGTAACCGAGAGACTGGAAAGTGACATCACCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS TCA 90 bp	GCACACCAATTTCTTTATTACCTTCTTAGGATTTATCCCAAACTGTaGTCTTATTTTCCTTGTTGCTCTCTCCCAGTAAATTGTAAGTTC	+
Preference number: 5 (lower is better) Translates to: AHQFLYYLLRIYPKL*SYFPCCSLPVNCKF Trigger: GAACTTACAATTTACTGGGAGAGAGCAACAAGGAAAATAAGATCACAGTTTGGGATAAATCCTAAGAAGGTAATAAAGAAATTGGTGTGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS CAA 72 bp	CCTGGTTCTGGCCCTGACTCCCTAGGTCACCGCCTGTaGGTGATGTCACTTTCCAGTCTCTCGGTTACTCCA	+
Preference number: 6 (lower is better) Translates to: PGSGPDSLGHRL*VMSLSSLSVTP Trigger: TGGAGTAACCGAGAGACTGGAAAGTGACATCACCAACAGGCGGTGACCTAGGGAGTCAGGGCCAGAACCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS TCA 72 bp	GTCAGGAAGTCTGTATTCCAGACCTGGTTCTGGCCCTaGCTCCCTAGGTCACCGCCTGTTGGTGATGTCACT	+
Preference number: 6 (lower is better) Translates to: VRKSVFQTWFWP*LPRSPPVGDVT Trigger: AGTGACATCACCAACAGGCGGTGACCTAGGGAGTCAGGGCCAGAACCAGGTCTGGAATACAGACTTCCTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS TCA 72 bp	AGGGTCATATGCCTCAGGAAATCTTCACAGGCAGATTaGAATAGGGAGCCACGCAGCCACGCTCAGAAGCAC	+
Preference number: 6 (lower is better) Translates to: RVICLRKSSQAD*NREPRSHAQKH Trigger: GTGCTTCTGAGCGTGGCTGCGTGGCTCCCTATTTCAATCTGCCTGTGAAGATTTCCTGAGGCATATGACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS CAA 90 bp	TATTCCAGACCTGGTTCTGGCCCTGACTCCCTAGGTCACCGCCTGTaGGTGATGTCACTTTCCAGTCTCTCGGTTACTCCATCTGTACAA	+
Preference number: 6 (lower is better) Translates to: YSRPGSGPDSLGHRL*VMSLSSLSVTPSVQ Trigger: TTGTACAGATGGAGTAACCGAGAGACTGGAAAGTGACATCACCAACAGGCGGTGACCTAGGGAGTCAGGGCCAGAACCAGGTCTGGAATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS TCA 72 bp	TCTGCCTGGTATCACTCTCTCCTCTTTGAGAGTGTTTaGGTCGGATCCTCTCAGCCAAGTGGCAGATGGAGA	+
Preference number: 6 (lower is better) Translates to: SAWYHSLLFESV*VGSSQPSGRWR Trigger: TCTCCATCTGCCACTTGGCTGAGAGGATCCGACTCAAACACTCTCAAAGAGGAGAGAGTGATACCAGGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS GCA 72 bp	AGATCAGGTAGACACGTCCAGACACAAACCCCTTGCTaGTTCCTGTACCTTCTTCTGCCTGGTATCACTCTC	+
Preference number: 6 (lower is better) Translates to: RSGRHVQTQTPC*FLYLLLPGITL Trigger: GAGAGTGATACCAGGCAGAAGAAGGTACAGGAAGCAGCAAGGGGTTTGTGTCTGGACGTGTCTACCTGATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS TCA 72 bp	TTTCCTTGTTGCTCTCTCCCAGTAAATTGTAAGTTCTaGGAGGGTGGACTCACATCTTTCTTGTTCACCAGT	+
Preference number: 6 (lower is better) Translates to: FPCCSLPVNCKF*EGGLTSFLFTS Trigger: ACTGGTGAACAAGAAAGATGTGAGTCCACCCTCTCAGAACTTACAATTTACTGGGAGAGAGCAACAAGGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS CAA 90 bp	ACGTGCCAAGATTTCTCTTCTAGATCTTTGCATTTGAAATTCCCTTaGCTTATAATGCTCTTGCCTAGCTCTTCATATATCTGGCTTGAG	+
Preference number: 6 (lower is better) Translates to: TCQDFSSRSLHLKFP*LIMLLPSSSYIWLE Trigger: CTCAAGCCAGATATATGAAGAGCTAGGCAAGAGCATTATAAGCAAAGGGAATTTCAAATGCAAAGATCTAGAAGAGAAATCTTGGCACGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS CCA 72 bp	TCACTTTCCAGTCTCTCGGTTACTCCATCTGTACAATaGAAAGAATATATCCTATTCTTAGCAACTGAGTGT	+
Preference number: 6 (lower is better) Translates to: SLSSLSVTPSVQ*KEYILFLATEC Trigger: ACACTCAGTTGCTAAGAATAGGATATATTCTTTCCATTGTACAGATGGAGTAACCGAGAGACTGGAAAGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000626109.1
CDS CAA 72 bp	TGTACACAAAGTAAACTTTGTTGCACATTGCATGAATaGTCTCTTTTAACTGTTATTAAACCCCAGGCAGAG	+
Preference number: 6 (lower is better) Translates to: CTQSKLCCTLHE*SLLTVIKPQAE Trigger: CTCTGCCTGGGGTTTAATAACAGTTAAAAGAGACAATTCATGCAATGTGCAACAAAGTTTACTTTGTGTACA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000626109.1