Pregenerated sensors for LINC00533 (Homo sapiens)
Ensembl gene IDs: ENSG00000235570, ENSG00000249032Ensembl transcript IDs: ENST00000456103.1, ENST00000504412.1, ENST00000512141.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGCTCGAGGCTTGTGTTCCCGCGGCTCCTGAGAGGGGGCACAGATaGAAACCAGAAGGGGAGGCGTCACCGGACAGGGTCTTTCCTAAT | + |
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Preference number: 5 (lower is better) Translates to: LLEACVPAAPERGHR*KPEGEASPDRVFPN Trigger: ATTAGGAAAGACCCTGTCCGGTGACGCCTCCCCTTCTGGTTTCCATCTGTGCCCCCTCTCAGGAGCCGCGGGAACACAAGCCTCGAGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000456103.1 ENST00000504412.1 ENST00000512141.1 |
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| CDS GCA 90 bp | TCGGTCTCTAGACGTGGCGAGAGCAGTTTTTACATTCCATGGCATTaGGGTGATTTCGAATCATCAAGTGGTTGGATTCTGCTCGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: SVSRRGESSFYIPWH*GDFESSSGWILLEA Trigger: AGCCTCGAGCAGAATCCAACCACTTGATGATTCGAAATCACCGCAATGCCATGGAATGTAAAAACTGCTCTCGCCACGTCTAGAGACCGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456103.1 ENST00000504412.1 |
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| CDS CCA 90 bp | GAGGCATCGGTCTCTAGACGTGGCGAGAGCAGTTTTTACATTCCATaGCATTGCGGTGATTTCGAATCATCAAGTGGTTGGATTCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: EASVSRRGESSFYIP*HCGDFESSSGWILL Trigger: GAGCAGAATCCAACCACTTGATGATTCGAAATCACCGCAATGCCATGGAATGTAAAAACTGCTCTCGCCACGTCTAGAGACCGATGCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456103.1 ENST00000504412.1 |
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| CDS TCA 90 bp | TACTGTGTTTTCGAATACATCAACTTTGCAGTAAAGGCAGACTCCTaGAAGGAACTTCTAGAAATTAGACTCCCTTCAAGTCCAACAAAA | + |
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Preference number: 5 (lower is better) Translates to: YCVFEYINFAVKADS*KELLEIRLPSSPTK Trigger: TTTTGTTGGACTTGAAGGGAGTCTAATTTCTAGAAGTTCCTTTCAGGAGTCTGCCTTTACTGCAAAGTTGATGTATTCGAAAACACAGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456103.1 ENST00000504412.1 |
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| CDS CCA 72 bp | GCTTGTGTTCCCGCGGCTCCTGAGAGGGGGCACAGATaGAAACCAGAAGGGGAGGCGTCACCGGACAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: ACVPAAPERGHR*KPEGEASPDRV Trigger: GACCCTGTCCGGTGACGCCTCCCCTTCTGGTTTCCATCTGTGCCCCCTCTCAGGAGCCGCGGGAACACAAGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000456103.1 ENST00000504412.1 ENST00000512141.1 |
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| CDS CCA 72 bp | GTCTCTAGACGTGGCGAGAGCAGTTTTTACATTCCATaGCATTGCGGTGATTTCGAATCATCAAGTGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: VSRRGESSFYIP*HCGDFESSSGW Trigger: CCAACCACTTGATGATTCGAAATCACCGCAATGCCATGGAATGTAAAAACTGCTCTCGCCACGTCTAGAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456103.1 ENST00000504412.1 |
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| CDS TCA 72 bp | TGGCGAGAGCAGTTTTTACATTCCATGGCATTGCGGTaGTTTCGAATCATCAAGTGGTTGGATTCTGCTCGA | + |
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Preference number: 6 (lower is better) Translates to: WREQFLHSMALR*FRIIKWLDSAR Trigger: TCGAGCAGAATCCAACCACTTGATGATTCGAAATCACCGCAATGCCATGGAATGTAAAAACTGCTCTCGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456103.1 ENST00000504412.1 |
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| CDS GCA 72 bp | AGACGTGGCGAGAGCAGTTTTTACATTCCATGGCATTaGGGTGATTTCGAATCATCAAGTGGTTGGATTCTG | + |
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Preference number: 6 (lower is better) Translates to: RRGESSFYIPWH*GDFESSSGWIL Trigger: CAGAATCCAACCACTTGATGATTCGAAATCACCGCAATGCCATGGAATGTAAAAACTGCTCTCGCCACGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000456103.1 ENST00000504412.1 |
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| CDS CAA 90 bp | CCTTGTAGAAGCTTTCGTATGTTCGGATACACAAATACCACTGTATaGCAATTGCCGACGGTATTCAGTTCAGCAACATTCTGTACAGCT | + |
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Preference number: 6 (lower is better) Translates to: PCRSFRMFGYTNTTV*QLPTVFSSATFCTA Trigger: AGCTGTACAGAATGTTGCTGAACTGAATACCGTCGGCAATTGCAATACAGTGGTATTTGTGTATCCGAACATACGAAAGCTTCTACAAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512141.1 |
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| CDS CAA 72 bp | AGCTTTCGTATGTTCGGATACACAAATACCACTGTATaGCAATTGCCGACGGTATTCAGTTCAGCAACATTC | + |
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Preference number: 6 (lower is better) Translates to: SFRMFGYTNTTV*QLPTVFSSATF Trigger: GAATGTTGCTGAACTGAATACCGTCGGCAATTGCAATACAGTGGTATTTGTGTATCCGAACATACGAAAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000512141.1 |
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