Pregenerated sensors for LINC00525 (Homo sapiens)
Ensembl gene IDs: ENSG00000146666Ensembl transcript IDs: ENST00000412730.1
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTAGTTGCAGGGAGGAACCTCAAAGGAGAGGGCTTGCCTGCTGCCTaGTATAGGTCCACATGGTGCCCAGCTCAGTGGTCCTCTACTGTG | + |
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Preference number: 5 (lower is better) Translates to: VVAGRNLKGEGLPAA*YRSTWCPAQWSSTV Trigger: CACAGTAGAGGACCACTGAGCTGGGCACCATGTGGACCTATAGCAGGCAGCAGGCAAGCCCTCTCCTTTGAGGTTCCTCCCTGCAACTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 90 bp | GCGGGAGTCATAGGGTCTCTGCATCACCCCGTGGGCATCAGGGCTTaGGGCACCAGTGCAAATACACTGACACTGGCCATTGCTTTAGCT | + |
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Preference number: 5 (lower is better) Translates to: AGVIGSLHHPVGIRA*GTSANTLTLAIALA Trigger: AGCTAAAGCAATGGCCAGTGTCAGTGTATTTGCACTGGTGCCTCAAGCCCTGATGCCCACGGGGTGATGCAGAGACCCTATGACTCCCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 90 bp | AATCTTGTTTCAGTTAGCAGGCCAAGGGTCAGCGGTCAACAGAGCTaGTCCAGCAAGCTCTGTGTGGTGCCTCAAACAGGCCACACAAAG | + |
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Preference number: 5 (lower is better) Translates to: NLVSVSRPRVSGQQS*SSKLCVVPQTGHTK Trigger: CTTTGTGTGGCCTGTTTGAGGCACCACACAGAGCTTGCTGGAGCAGCTCTGTTGACCGCTGACCCTTGGCCTGCTAACTGAAACAAGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 90 bp | AGTCTTCTGCCAGCATCCATGAAACTGGGGCAGCAGCCTCACTTGTaGATCTTGTTTCAGTTAGCAGGCCAAGGGTCAGCGGTCAACAGA | + |
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Preference number: 5 (lower is better) Translates to: SLLPASMKLGQQPHL*ILFQLAGQGSAVNR Trigger: TCTGTTGACCGCTGACCCTTGGCCTGCTAACTGAAACAAGATTCACAAGTGAGGCTGCTGCCCCAGTTTCATGGATGCTGGCAGAAGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 90 bp | TGTTCTCCTACAGGTCTTACTGGGTGCACCAAGACTATAAAGCCTTaGCTCTTCTTTACTGGATCCATTTTTCGGGGTCGTAGTTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: CSPTGLTGCTKTIKP*LFFTGSIFRGRSCR Trigger: CCTGCAACTACGACCCCGAAAAATGGATCCAGTAAAGAAGAGTCAAGGCTTTATAGTCTTGGTGCACCCAGTAAGACCTGTAGGAGAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CCA 90 bp | AAGAAACAGTCCTCCACAGGCTTCCTGTTCTCCTACAGGTCTTACTaGGTGCACCAAGACTATAAAGCCTTGACTCTTCTTTACTGGATC | + |
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Preference number: 5 (lower is better) Translates to: KKQSSTGFLFSYRSY*VHQDYKALTLLYWI Trigger: GATCCAGTAAAGAAGAGTCAAGGCTTTATAGTCTTGGTGCACCCAGTAAGACCTGTAGGAGAACAGGAAGCCTGTGGAGGACTGTTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 90 bp | AAGAAGCAAATCTGCTTCGTGGATGTACGGTGCAAGGAGACAAATTaGAGTGTTGTTTATACATGTGTAAGAGCTAACACTTGGAAACTT | + |
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Preference number: 5 (lower is better) Translates to: KKQICFVDVRCKETN*SVVYTCVRANTWKL Trigger: AAGTTTCCAAGTGTTAGCTCTTACACATGTATAAACAACACTGCAATTTGTCTCCTTGCACCGTACATCCACGAAGCAGATTTGCTTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 90 bp | ACGCAAGAGTTAGTCAGGAAAAGAAGACGCAAGAAAATTCCTATATaGGACTGGGAATTGTCAGTTCCTGAAATCACTGAGGGAAATAAT | + |
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Preference number: 5 (lower is better) Translates to: TQELVRKRRRKKIPI*DWELSVPEITEGNN Trigger: ATTATTTCCCTCAGTGATTTCAGGAACTGACAATTCCCAGTCGCATATAGGAATTTTCTTGCGTCTTCTTTTCCTGACTAACTCTTGCGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CCA 90 bp | GAGTTAGTCAGGAAAAGAAGACGCAAGAAAATTCCTATATGCGACTaGGAATTGTCAGTTCCTGAAATCACTGAGGGAAATAATTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: ELVRKRRRKKIPICD*ELSVPEITEGNNLA Trigger: TGCCAAATTATTTCCCTCAGTGATTTCAGGAACTGACAATTCCCAGTCGCATATAGGAATTTTCTTGCGTCTTCTTTTCCTGACTAACTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 72 bp | GGGAGGAACCTCAAAGGAGAGGGCTTGCCTGCTGCCTaGTATAGGTCCACATGGTGCCCAGCTCAGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: GRNLKGEGLPAA*YRSTWCPAQWS Trigger: GGACCACTGAGCTGGGCACCATGTGGACCTATAGCAGGCAGCAGGCAAGCCCTCTCCTTTGAGGTTCCTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CAA 90 bp | TTTTTCGGGGTCGTAGTTGCAGGGAGGAACCTCAAAGGAGAGGGCTaGCCTGCTGCCTGCTATAGGTCCACATGGTGCCCAGCTCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: FFGVVVAGRNLKGEG*PAACYRSTWCPAQW Trigger: CCACTGAGCTGGGCACCATGTGGACCTATAGCAGGCAGCAGGCAAGCCCTCTCCTTTGAGGTTCCTCCCTGCAACTACGACCCCGAAAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 72 bp | TCAGTTAGCAGGCCAAGGGTCAGCGGTCAACAGAGCTaGTCCAGCAAGCTCTGTGTGGTGCCTCAAACAGGC | + |
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Preference number: 6 (lower is better) Translates to: SVSRPRVSGQQS*SSKLCVVPQTG Trigger: GCCTGTTTGAGGCACCACACAGAGCTTGCTGGAGCAGCTCTGTTGACCGCTGACCCTTGGCCTGCTAACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CAA 72 bp | GTCGTAGTTGCAGGGAGGAACCTCAAAGGAGAGGGCTaGCCTGCTGCCTGCTATAGGTCCACATGGTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: VVVAGRNLKGEG*PAACYRSTWCP Trigger: TGGGCACCATGTGGACCTATAGCAGGCAGCAGGCAAGCCCTCTCCTTTGAGGTTCCTCCCTGCAACTACGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 72 bp | TCAGTGGTCCTCTACTGTGACTTGACCCAATGCATGTaGGGGAGTCATAGGGTCTCTGCATCACCCCGTGGG | + |
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Preference number: 6 (lower is better) Translates to: SVVLYCDLTQCM*GSHRVSASPRG Trigger: CCCACGGGGTGATGCAGAGACCCTATGACTCCCGCACATGCATTGGGTCAAGTCACAGTAGAGGACCACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 72 bp | ATAGGGTCTCTGCATCACCCCGTGGGCATCAGGGCTTaGGGCACCAGTGCAAATACACTGACACTGGCCATT | + |
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Preference number: 6 (lower is better) Translates to: IGSLHHPVGIRA*GTSANTLTLAI Trigger: AATGGCCAGTGTCAGTGTATTTGCACTGGTGCCTCAAGCCCTGATGCCCACGGGGTGATGCAGAGACCCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 72 bp | ACATGGTGCCCAGCTCAGTGGTCCTCTACTGTGACTTaGCCCAATGCATGTGCGGGAGTCATAGGGTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: TWCPAQWSSTVT*PNACAGVIGSL Trigger: CAGAGACCCTATGACTCCCGCACATGCATTGGGTCAAGTCACAGTAGAGGACCACTGAGCTGGGCACCATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 72 bp | GCATCACCCCGTGGGCATCAGGGCTTGAGGCACCAGTaGAAATACACTGACACTGGCCATTGCTTTAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: ASPRGHQGLRHQ*KYTDTGHCFSC Trigger: ACAGCTAAAGCAATGGCCAGTGTCAGTGTATTTGCACTGGTGCCTCAAGCCCTGATGCCCACGGGGTGATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CAA 72 bp | CACATGGTGCCCAGCTCAGTGGTCCTCTACTGTGACTaGACCCAATGCATGTGCGGGAGTCATAGGGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: HMVPSSVVLYCD*TQCMCGSHRVS Trigger: AGAGACCCTATGACTCCCGCACATGCATTGGGTCAAGTCACAGTAGAGGACCACTGAGCTGGGCACCATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 72 bp | CCAGCATCCATGAAACTGGGGCAGCAGCCTCACTTGTaGATCTTGTTTCAGTTAGCAGGCCAAGGGTCAGCG | + |
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Preference number: 6 (lower is better) Translates to: PASMKLGQQPHL*ILFQLAGQGSA Trigger: CGCTGACCCTTGGCCTGCTAACTGAAACAAGATTCACAAGTGAGGCTGCTGCCCCAGTTTCATGGATGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 72 bp | GTTTCCAAAGCAAAGGGGTCACCCGGTGAGTGTTGGTaGAGTCCTCACTGTTTGTCCTGCCTCTTGCTACAG | + |
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Preference number: 6 (lower is better) Translates to: VSKAKGSPGECW*SPHCLSCLLLQ Trigger: CTGTAGCAAGAGGCAGGACAAACAGTGAGGACTGCACCAACACTCACCGGGTGACCCCTTTGCTTTGGAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CCA 72 bp | TCAGCGGTCAACAGAGCTGCTCCAGCAAGCTCTGTGTaGTGCCTCAAACAGGCCACACAAAGAGATGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: SAVNRAAPASSV*CLKQATQRDAV Trigger: AACAGCATCTCTTTGTGTGGCCTGTTTGAGGCACCACACAGAGCTTGCTGGAGCAGCTCTGTTGACCGCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CCA 72 bp | TCCTCCACAGGCTTCCTGTTCTCCTACAGGTCTTACTaGGTGCACCAAGACTATAAAGCCTTGACTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: SSTGFLFSYRSY*VHQDYKALTLL Trigger: AAGAAGAGTCAAGGCTTTATAGTCTTGGTGCACCCAGTAAGACCTGTAGGAGAACAGGAAGCCTGTGGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CAA 90 bp | TGCGACTGGGAATTGTCAGTTCCTGAAATCACTGAGGGAAATAATTaGGCAAGAAGCAAATCTGCTTCGTGGATGTACGGTGCAAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: CDWELSVPEITEGNN*ARSKSASWMYGARR Trigger: TCTCCTTGCACCGTACATCCACGAAGCAGATTTGCTTCTTGCCAAATTATTTCCCTCAGTGATTTCAGGAACTGACAATTCCCAGTCGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 72 bp | ACAGGTCTTACTGGGTGCACCAAGACTATAAAGCCTTaGCTCTTCTTTACTGGATCCATTTTTCGGGGTCGT | + |
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Preference number: 6 (lower is better) Translates to: TGLTGCTKTIKP*LFFTGSIFRGR Trigger: ACGACCCCGAAAAATGGATCCAGTAAAGAAGAGTCAAGGCTTTATAGTCTTGGTGCACCCAGTAAGACCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CAA 90 bp | TGCAGTGTTGTTTATACATGTGTAAGAGCTAACACTTGGAAACTTTaGGAAGAAACAGTCCTCCACAGGCTTCCTGTTCTCCTACAGGTC | + |
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Preference number: 6 (lower is better) Translates to: CSVVYTCVRANTWKL*EETVLHRLPVLLQV Trigger: GACCTGTAGGAGAACAGGAAGCCTGTGGAGGACTGTTTCTTCCAAAAGTTTCCAAGTGTTAGCTCTTACACATGTATAAACAACACTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS TCA 72 bp | GGACCGAAGAGGAAATTGAACGATCAGTCCAACAAATaGCAATTGCTCAAACTCATCAGTAATCAAGGACAC | + |
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Preference number: 6 (lower is better) Translates to: GPKRKLNDQSNK*QLLKLISNQGH Trigger: GTGTCCTTGATTACTGATGAGTTTGAGCAATTGTCATTTGTTGGACTGATCGTTCAATTTCCTCTTCGGTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS GCA 72 bp | ATCTGCTTCGTGGATGTACGGTGCAAGGAGACAAATTaGAGTGTTGTTTATACATGTGTAAGAGCTAACACT | + |
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Preference number: 6 (lower is better) Translates to: ICFVDVRCKETN*SVVYTCVRANT Trigger: AGTGTTAGCTCTTACACATGTATAAACAACACTGCAATTTGTCTCCTTGCACCGTACATCCACGAAGCAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CAA 90 bp | GTCAGGAAAAGAAGACGCAAGAAAATTCCTATATGCGACTGGGAATaGTCAGTTCCTGAAATCACTGAGGGAAATAATTTGGCAAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: VRKRRRKKIPICDWE*SVPEITEGNNLARS Trigger: GCTTCTTGCCAAATTATTTCCCTCAGTGATTTCAGGAACTGACAATTCCCAGTCGCATATAGGAATTTTCTTGCGTCTTCTTTTCCTGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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| CDS CAA 72 bp | AGAAGACGCAAGAAAATTCCTATATGCGACTGGGAATaGTCAGTTCCTGAAATCACTGAGGGAAATAATTTG | + |
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Preference number: 6 (lower is better) Translates to: RRRKKIPICDWE*SVPEITEGNNL Trigger: CAAATTATTTCCCTCAGTGATTTCAGGAACTGACAATTCCCAGTCGCATATAGGAATTTTCTTGCGTCTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412730.1 |
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