Pregenerated sensors for LINC00520 (Homo sapiens)
Ensembl gene IDs: ENSG00000258791Ensembl transcript IDs: ENST00000554186.2, ENST00000554221.7, ENST00000556417.6, ENST00000560267.6, ENST00000560336.6, ENST00000647781.1, ENST00000649691.1, ENST00000649892.1, ENST00000650020.1, ENST00000650527.1
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAGGCCCCCTGGAGTCGTTGGTACCAGTCAGACTTGATGGGATTGTaGGGCAGTGTCTCTGGGAAGAGGAGAGGGCAGCTCCAACCCTAT | + |
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Preference number: 5 (lower is better) Translates to: EAPWSRWYQSDLMGL*GSVSGKRRGQLQPY Trigger: ATAGGGTTGGAGCTGCCCTCTCCTCTTCCCAGAGACACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS TCA 90 bp | CCCGTATGGGTCCTCCTAGCACCCAGGCCATGTGTGGTGAGGGGCTaGCATCTCATCAAGGGAGAGGGGATACTTTCCCTTCTTGGATGC | + |
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Preference number: 5 (lower is better) Translates to: PVWVLLAPRPCVVRG*HLIKGEGILSLLGC Trigger: GCATCCAAGAAGGGAAAGTATCCCCTCTCCCTTGATGAGATGTCAGCCCCTCACCACACATGGCCTGGGTGCTAGGAGGACCCATACGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CCA 90 bp | CTGGTGCCCACACAGGCCTATACAGTTCTGAAGGCAGAGGCCCCCTaGAGTCGTTGGTACCAGTCAGACTTGATGGGATTGTGGGGCAGT | + |
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Preference number: 5 (lower is better) Translates to: LVPTQAYTVLKAEAP*SRWYQSDLMGLWGS Trigger: ACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTGCCTTCAGAACTGTATAGGCCTGTGTGGGCACCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CCA 90 bp | TACACCATGCTGGGCTGGTCGAGTGGTCAGAGGTGGCCATACGTTTaGCTCGGGGTTTCCTTAGCCTGGAGCTTCATCTCTTTGCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: YTMLGWSSGQRWPYV*LGVSLAWSFISLQG Trigger: GCCCTGCAAAGAGATGAAGCTCCAGGCTAAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACTCGACCAGCCCAGCATGGTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS CCA 90 bp | ACACAGGCCTATACAGTTCTGAAGGCAGAGGCCCCCTGGAGTCGTTaGTACCAGTCAGACTTGATGGGATTGTGGGGCAGTGTCTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: TQAYTVLKAEAPWSR*YQSDLMGLWGSVSG Trigger: CCCAGAGACACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTGCCTTCAGAACTGTATAGGCCTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS GCA 90 bp | TCGAGTGGTCAGAGGTGGCCATACGTTTGGCTCGGGGTTTCCTCTTaGCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAGTCCTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SSGQRWPYVWLGVSS*QSVLQLFSSQESLP Trigger: TGGCAAGGACTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACTCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000560267.6 ENST00000647781.1 ENST00000650020.1 |
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| CDS CCA 90 bp | TCGTTGGTACCAGTCAGACTTGATGGGATTGTGGGGCAGTGTCTCTaGGAAGAGGAGAGGGCAGCTCCAACCCTATCAGATTCTCCACAG | + |
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Preference number: 5 (lower is better) Translates to: SLVPVRLDGIVGQCL*EEERAAPTLSDSPQ Trigger: CTGTGGAGAATCTGATAGGGTTGGAGCTGCCCTCTCCTCTTCCCAGAGACACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS GCA 90 bp | AGCCATAGAATCTTGCTTGGGCAGCCAGTGAGAGGTGGTACCTCTTaGCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAGTCCTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SHRILLGQPVRGGTS*QSVLQLFSSQESLP Trigger: TGGCAAGGACTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGTACCACCTCTCACTGGCTGCCCAAGCAAGATTCTATGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CCA 90 bp | AGTGGTCAGAGGTGGCCATACGTTTGGCTCGGGGTTTCCTTAGCCTaGAGCTTCATCTCTTTGCAGGGCACCTCTTGTTCCCTTAATATC | + |
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Preference number: 5 (lower is better) Translates to: SGQRWPYVWLGVSLA*SFISLQGTSCSLNI Trigger: GATATTAAGGGAACAAGAGGTGCCCTGCAAAGAGATGAAGCTCCAGGCTAAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS CCA 90 bp | CTCTGCTTCTATAAAATTTGTGAAATTCCCACGAGGCTCTCACCTTaGCCTCTTGCCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: LCFYKICEIPTRLSP*PLARVSFSFSLPRS Trigger: ACTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGCCAAGGTGAGAGCCTCGTGGGAATTTCACAAATTTTATAGAAGCAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560336.6 |
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| CDS GCA 90 bp | TCATCAACCTCAGATGTCCCTGAAGGAGCAGGGCTTCTAGATAGATaGCCTTTGATGAGTGAGTCGCTGAGAATTATTCCAAGCCATAGA | + |
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Preference number: 5 (lower is better) Translates to: SSTSDVPEGAGLLDR*PLMSESLRIIPSHR Trigger: TCTATGGCTTGGAATAATTCTCAGCGACTCACTCATCAAAGGGCATCTATCTAGAAGCCCTGCTCCTTCAGGGACATCTGAGGTTGATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS GCA 90 bp | GTGGATTGTAGGTGTTATCCGCCCCTTGCTCAAATAGCACTCCTCTaGTTCTATAAAATTTGTGAAATTCCCACGAGGCTCTCACCTTGG | + |
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Preference number: 5 (lower is better) Translates to: VDCRCYPPLAQIALL*FYKICEIPTRLSPW Trigger: CCAAGGTGAGAGCCTCGTGGGAATTTCACAAATTTTATAGAAGCAGAGGAGTGCTATTTGAGCAAGGGGCGGATAACACCTACAATCCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000554221.7 ENST00000556417.6 ENST00000560336.6 ENST00000649691.1 |
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| CDS GCA 90 bp | AAACTTAAGCTTGTGTCAGTTTCACCCACTGTGTCCTGTAATGGCTaGTTCTTTCCTTGTCATCCAGCCCATGGCCATTTTGCAAGGACT | + |
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Preference number: 5 (lower is better) Translates to: KLKLVSVSPTVSCNG*FFPCHPAHGHFART Trigger: AGTCCTTGCAAAATGGCCATGGGCTGGATGACAAGGAAAGAAGCAGCCATTACAGGACACAGTGGGTGAAACTGACACAAGCTTAAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000554186.2 ENST00000554221.7 |
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| CDS CCA 90 bp | TTTCTTCTAGAAGATTCCCCTTCCCTGTGTCTCATTACCTTAGCCTaGAGCTTCATCTCTTTGCAGGGCACCTCTTGTTCCCTTAATATC | + |
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Preference number: 5 (lower is better) Translates to: FLLEDSPSLCLITLA*SFISLQGTSCSLNI Trigger: GATATTAAGGGAACAAGAGGTGCCCTGCAAAGAGATGAAGCTCCAGGCTAAGGTAATGAGACACAGGGAAGGGGAATCTTCTAGAAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554186.2 |
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| CDS CCA 90 bp | TTTTCCAATGCCAAAGCTCATTCATTCCCTCATTTGTTTGTAAGTTaGGACTTGTGTTACGGTCTTCAATGGAGGCTGAGGTCCAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: FSNAKAHSFPHLFVS*DLCYGLQWRLRSKS Trigger: TGACTTGGACCTCAGCCTCCATTGAAGACCGTAACACAAGTCCCAACTTACAAACAAATGAGGGAATGAATGAGCTTTGGCATTGGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | GCAGAGGCCCCCTGGAGTCGTTGGTACCAGTCAGACTaGATGGGATTGTGGGGCAGTGTCTCTGGGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: AEAPWSRWYQSD*MGLWGSVSGKR Trigger: CCTCTTCCCAGAGACACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | GCTGGGCTGGTCGAGTGGTCAGAGGTGGCCATACGTTaGGCTCGGGGTTTCCTTAGCCTGGAGCTTCATCTC | + |
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Preference number: 6 (lower is better) Translates to: AGLVEWSEVAIR*ARGFLSLELHL Trigger: GAGATGAAGCTCCAGGCTAAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACTCGACCAGCCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS CAA 90 bp | GTACACCATGCTGGGCTGGTCGAGTGGTCAGAGGTGGCCATACGTTaGGCTCGGGGTTTCCTTAGCCTGGAGCTTCATCTCTTTGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: VHHAGLVEWSEVAIR*ARGFLSLELHLFAG Trigger: CCCTGCAAAGAGATGAAGCTCCAGGCTAAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACTCGACCAGCCCAGCATGGTGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS TCA 72 bp | CAGAGGCCCCCTGGAGTCGTTGGTACCAGTCAGACTTaGTGGGATTGTGGGGCAGTGTCTCTGGGAAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: QRPPGVVGTSQT*WDCGAVSLGRG Trigger: TCCTCTTCCCAGAGACACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CCA 72 bp | AACACTCCATGCCAGGCTCATCAAGAAGCAGCTAGATaGGGTCTGCCCCCTACACATTCCCCTCCCAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: NTPCQAHQEAAR*GLPPTHSPPSG Trigger: GCCACTGGGAGGGGAATGTGTAGGGGGCAGACCCCATCTAGCTGCTTCTTGATGAGCCTGGCATGGAGTGTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CCA 72 bp | CTGGGCTGGTCGAGTGGTCAGAGGTGGCCATACGTTTaGCTCGGGGTTTCCTTAGCCTGGAGCTTCATCTCT | + |
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Preference number: 6 (lower is better) Translates to: LGWSSGQRWPYV*LGVSLAWSFIS Trigger: AGAGATGAAGCTCCAGGCTAAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACTCGACCAGCCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS CAA 90 bp | GTCGAGTGGTCAGAGGTGGCCATACGTTTGGCTCGGGGTTTCCTCTaGCCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAGTCCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: VEWSEVAIRLARGFL*PECPSAFLFPGVLA Trigger: GGCAAGGACTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACTCGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000560267.6 ENST00000647781.1 ENST00000650020.1 |
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| CDS CAA 90 bp | CACACAGGCCTATACAGTTCTGAAGGCAGAGGCCCCCTGGAGTCGTaGGTACCAGTCAGACTTGATGGGATTGTGGGGCAGTGTCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: HTGLYSSEGRGPLES*VPVRLDGIVGQCLW Trigger: CCAGAGACACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTGCCTTCAGAACTGTATAGGCCTGTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS TCA 72 bp | GTCCTCCTAGCACCCAGGCCATGTGTGGTGAGGGGCTaGCATCTCATCAAGGGAGAGGGGATACTTTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: VLLAPRPCVVRG*HLIKGEGILSL Trigger: AAGGGAAAGTATCCCCTCTCCCTTGATGAGATGTCAGCCCCTCACCACACATGGCCTGGGTGCTAGGAGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | GCTGGGCTGGTCGAGTGGTCAGAGGTGGCCATACGTTaGGCTCGGGGTTTCCTAGAAGCCAAAACAGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: AGLVEWSEVAIR*ARGFLEAKTEG Trigger: TCCTTCTGTTTTGGCTTCTAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGACCACTCGACCAGCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS TCA 72 bp | TGTAAAGACTGGTGCCCACACAGGCCTATACAGTTCTaGAGGCAGAGGCCCCCTGGAGTCGTTGGTACCAGT | + |
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Preference number: 6 (lower is better) Translates to: CKDWCPHRPIQF*RQRPPGVVGTS Trigger: ACTGGTACCAACGACTCCAGGGGGCCTCTGCCTTCAGAACTGTATAGGCCTGTGTGGGCACCAGTCTTTACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS GCA 72 bp | CAGAGGTGGCCATACGTTTGGCTCGGGGTTTCCTCTTaGCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: QRWPYVWLGVSS*QSVLQLFSSQE Trigger: CTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGAAACCCCGAGCCAAACGTATGGCCACCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000560267.6 ENST00000647781.1 ENST00000650020.1 |
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| CDS CCA 72 bp | AGGTGGCCATACGTTTGGCTCGGGGTTTCCTTAGCCTaGAGCTTCATCTCTTTGCAGGGCACCTCTTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: RWPYVWLGVSLA*SFISLQGTSCS Trigger: GGAACAAGAGGTGCCCTGCAAAGAGATGAAGCTCCAGGCTAAGGAAACCCCGAGCCAAACGTATGGCCACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS CAA 72 bp | CTATACAGTTCTGAAGGCAGAGGCCCCCTGGAGTCGTaGGTACCAGTCAGACTTGATGGGATTGTGGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: LYSSEGRGPLES*VPVRLDGIVGQ Trigger: CTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTGCCTTCAGAACTGTATAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS GCA 72 bp | ATCTTGCTTGGGCAGCCAGTGAGAGGTGGTACCTCTTaGCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAG | + |
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Preference number: 6 (lower is better) Translates to: ILLGQPVRGGTS*QSVLQLFSSQE Trigger: CTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGTACCACCTCTCACTGGCTGCCCAAGCAAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CCA 72 bp | TATACAGTTCTGAAGGCAGAGGCCCCCTGGAGTCGTTaGTACCAGTCAGACTTGATGGGATTGTGGGGCAGT | + |
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Preference number: 6 (lower is better) Translates to: YTVLKAEAPWSR*YQSDLMGLWGS Trigger: ACTGCCCCACAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTGCCTTCAGAACTGTATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CCA 72 bp | ACACAGGCCTATACAGTTCTGAAGGCAGAGGCCCCCTaGAGTCGTTGGTACCAGTCAGACTTGATGGGATTG | + |
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Preference number: 6 (lower is better) Translates to: TQAYTVLKAEAP*SRWYQSDLMGL Trigger: CAATCCCATCAAGTCTGACTGGTACCAACGACTCCAGGGGGCCTCTGCCTTCAGAACTGTATAGGCCTGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | TCAGAGGTGGCCATACGTTTGGCTCGGGGTTTCCTCTaGCCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: SEVAIRLARGFL*PECPSAFLFPG Trigger: TCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGAAACCCCGAGCCAAACGTATGGCCACCTCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000560267.6 ENST00000647781.1 ENST00000650020.1 |
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| CDS CAA 90 bp | GCTCACCCTATGCTGTCACCAAAATTCAGCATGATGAGAGAGCTCTaGGACAGGTCAACCTGGGTCCTCGAGGGAGAGGGAACATGGATG | + |
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Preference number: 6 (lower is better) Translates to: AHPMLSPKFSMMREL*DRSTWVLEGEGTWM Trigger: CATCCATGTTCCCTCTCCCTCGAGGACCCAGGTTGACCTGTCCAAGAGCTCTCTCATCATGCTGAATTTTGGTGACAGCATAGGGTGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | AATCTTGCTTGGGCAGCCAGTGAGAGGTGGTACCTCTaGCCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: NLAWAASERWYL*PECPSAFLFPG Trigger: TCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGTACCACCTCTCACTGGCTGCCCAAGCAAGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CAA 72 bp | ATGCTGTCACCAAAATTCAGCATGATGAGAGAGCTCTaGGACAGGTCAACCTGGGTCCTCGAGGGAGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: MLSPKFSMMREL*DRSTWVLEGEG Trigger: TCCCTCTCCCTCGAGGACCCAGGTTGACCTGTCCAAGAGCTCTCTCATCATGCTGAATTTTGGTGACAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 90 bp | GAAGAGGAGAGGGCAGCTCCAACCCTATCAGATTCTCCACAGCCCTaGGAGGGCAGGAAAAGTATCTTAGAAGGTTGTCTTCTTCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: EEERAAPTLSDSPQP*EGRKSILEGCLLLG Trigger: GCCAAGAAGAAGACAACCTTCTAAGATACTTTTCCTGCCCTCCAAGGGCTGTGGAGAATCTGATAGGGTTGGAGCTGCCCTCTCCTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 90 bp | TGCAGGGCACCTCTTGTTCCCTTAATATCTCTCTTCATGAGGCTCTaGCCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAGTCCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: CRAPLVPLISLFMRL*PECPSAFLFPGVLA Trigger: GGCAAGGACTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGCCTCATGAAGAGAGATATTAAGGGAACAAGAGGTGCCCTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS TCA 72 bp | TTATTCCAAGCCATAGAATCTTGCTTGGGCAGCCAGTaGGAGGTGGTACCTCTTGCCAGAGTGTCCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: LFQAIESCLGSQ*EVVPLARVSFS Trigger: GCTGAAGGACACTCTGGCAAGAGGTACCACCTCTCACTGGCTGCCCAAGCAAGATTCTATGGCTTGGAATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CAA 72 bp | CAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAGTCCTaGCCACCAATCTCTCTGAGACCCCAAAGAGGGAAA | + |
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Preference number: 6 (lower is better) Translates to: QSVLQLFSSQES*PPISLRPQRGK Trigger: TTTCCCTCTTTGGGGTCTCAGAGAGATTGGTGGCAAGGACTCCTGGGAAGAGAAAAGCTGAAGGACACTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 10 transcripts: ENST00000554186.2 ENST00000554221.7 ENST00000556417.6 ENST00000560267.6 ENST00000560336.6 ENST00000647781.1 ENST00000649691.1 ENST00000649892.1 ENST00000650020.1 ENST00000650527.1 |
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| CDS CAA 90 bp | CCTTTGATGAGTGAGTCGCTGAGAATTATTCCAAGCCATAGAATCTaGCTTGGGCAGCCAGTGAGAGGTGGTACCTCTTGCCAGAGTGTC | + |
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Preference number: 6 (lower is better) Translates to: PLMSESLRIIPSHRI*LGQPVRGGTSCQSV Trigger: GACACTCTGGCAAGAGGTACCACCTCTCACTGGCTGCCCAAGCAAGATTCTATGGCTTGGAATAATTCTCAGCGACTCACTCATCAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CAA 90 bp | GTCATCCAGCCCATGGCCATTTTGCAAGGACTAACTTATTACCTCTaGCCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGAGTCCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: VIQPMAILQGLTYYL*PECPSAFLFPGVLA Trigger: GGCAAGGACTCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGTAATAAGTTAGTCCTTGCAAAATGGCCATGGGCTGGATGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000554186.2 ENST00000554221.7 |
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| CDS CAA 90 bp | CCATACGTTTGGCTCGGGGTTTCCTTAGCCTGGAGCTTCATCTCTTaGCAGGGCACCTCTTGTTCCCTTAATATCTCTCTTCATGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: PYVWLGVSLAWSFIS*QGTSCSLNISLHEA Trigger: AGCCTCATGAAGAGAGATATTAAGGGAACAAGAGGTGCCCTGCAAAGAGATGAAGCTCCAGGCTAAGGAAACCCCGAGCCAAACGTATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000650527.1 |
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| CDS TCA 72 bp | ACATGGCTGTGGAGGCCTCACAATCATGGCAGAAGGTaGAGGAGGAGCACAGTCATATCTTACATGGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: TWLWRPHNHGRR*RRSTVISYMAE Trigger: TTCTGCCATGTAAGATATGACTGTGCTCCTCCTTCACCTTCTGCCATGATTGTGAGGCCTCCACAGCCATGT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000554221.7 ENST00000556417.6 ENST00000560336.6 ENST00000649691.1 ENST00000649892.1 ENST00000650020.1 ENST00000650527.1 |
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| CDS GCA 72 bp | CAAGTCACAAGAAGTCCAAGGCACAAGAAGCTCAACTaGAAGTCCTGCCACACAGTGACAACAGCCACCAAT | + |
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Preference number: 6 (lower is better) Translates to: QVTRSPRHKKLN*KSCHTVTTATN Trigger: ATTGGTGGCTGTTGTCACTGTGTGGCAGGACTTGCAGTTGAGCTTCTTGTGCCTTGGACTTCTTGTGACTTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CCA 72 bp | TTCCAGTTCCACATGGCTGTGGAGGCCTCACAATCATaGCAGAAGGTGAAGGAGGAGCACAGTCATATCTTA | + |
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Preference number: 6 (lower is better) Translates to: FQFHMAVEASQS*QKVKEEHSHIL Trigger: TAAGATATGACTGTGCTCCTCCTTCACCTTCTGCCATGATTGTGAGGCCTCCACAGCCATGTGGAACTGGAA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000554221.7 ENST00000556417.6 ENST00000560336.6 ENST00000649892.1 ENST00000650020.1 |
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| CDS CCA 72 bp | ATGGAGTTCCACATGGCTGTGGAGGCCTCACAATCATaGCAGAAGGTGAAGGAGGAGCACAGTCATATCTTA | + |
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Preference number: 6 (lower is better) Translates to: MEFHMAVEASQS*QKVKEEHSHIL Trigger: TAAGATATGACTGTGCTCCTCCTTCACCTTCTGCCATGATTGTGAGGCCTCCACAGCCATGTGGAACTCCAT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000650527.1 |
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| CDS CAA 72 bp | AGTGAGTCGCTGAGAATTATTCCAAGCCATAGAATCTaGCTTGGGCAGCCAGTGAGAGGTGGTACCTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: SESLRIIPSHRI*LGQPVRGGTSC Trigger: GCAAGAGGTACCACCTCTCACTGGCTGCCCAAGCAAGATTCTATGGCTTGGAATAATTCTCAGCGACTCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CAA 72 bp | AGGGCAGCTCCAACCCTATCAGATTCTCCACAGCCCTaGGAGGGCAGGAAAAGTATCTTAGAAGGTTGTCTT | + |
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Preference number: 6 (lower is better) Translates to: RAAPTLSDSPQP*EGRKSILEGCL Trigger: AAGACAACCTTCTAAGATACTTTTCCTGCCCTCCAAGGGCTGTGGAGAATCTGATAGGGTTGGAGCTGCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000560336.6 ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 90 bp | TCCCCTTCCCTGTGTCTCATTACCTTAGCCTGGAGCTTCATCTCTTaGCAGGGCACCTCTTGTTCCCTTAATATCTCTCTTCATGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: SPSLCLITLAWSFIS*QGTSCSLNISLHEA Trigger: AGCCTCATGAAGAGAGATATTAAGGGAACAAGAGGTGCCCTGCAAAGAGATGAAGCTCCAGGCTAAGGTAATGAGACACAGGGAAGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554186.2 |
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| CDS CCA 72 bp | CACAGTGACAACAGCCACCAATGTGCTGTCAAGATTTaGATCAAACACTCCATGCCAGGCTCATCAAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: HSDNSHQCAVKI*IKHSMPGSSRS Trigger: GCTTCTTGATGAGCCTGGCATGGAGTGTTTGATCCAAATCTTGACAGCACATTGGTGGCTGTTGTCACTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | GTCCCTGAAGGAGCAGGGCTTCTAGATAGATGCCCTTaGATGAGTGAGTCGCTGAGAATTATTCCAAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: VPEGAGLLDRCP*MSESLRIIPSH Trigger: ATGGCTTGGAATAATTCTCAGCGACTCACTCATCAAAGGGCATCTATCTAGAAGCCCTGCTCCTTCAGGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CAA 90 bp | ACCTCAGATGTCCCTGAAGGAGCAGGGCTTCTAGATAGATGCCCTTaGATGAGTGAGTCGCTGAGAATTATTCCAAGCCATAGAATCTTG | + |
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Preference number: 6 (lower is better) Translates to: TSDVPEGAGLLDRCP*MSESLRIIPSHRIL Trigger: CAAGATTCTATGGCTTGGAATAATTCTCAGCGACTCACTCATCAAAGGGCATCTATCTAGAAGCCCTGCTCCTTCAGGGACATCTGAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000556417.6 ENST00000649691.1 |
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| CDS CAA 90 bp | AGATTCTCCACAGCCCTTGGAGGGCAGGAAAAGTATCTTAGAAGGTaGTCTTCTTCTTGGCTCATTCTTAGAAGAGTTACCAGGGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: RFSTALGGQEKYLRR*SSSWLILRRVTRAG Trigger: ACCTGCCCTGGTAACTCTTCTAAGAATGAGCCAAGAAGAAGACAACCTTCTAAGATACTTTTCCTGCCCTCCAAGGGCTGTGGAGAATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000560336.6 ENST00000649691.1 ENST00000649892.1 |
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| CDS GCA 72 bp | TCCCCAGGTGATTCTGTAGTGAAGTATGAGTACTTCTaGATCCGGCTATGCTTGGAAATCCTGAGTGGATTG | + |
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Preference number: 6 (lower is better) Translates to: SPGDSVVKYEYF*IRLCLEILSGL Trigger: CAATCCACTCAGGATTTCCAAGCATAGCCGGATGCAGAAGTACTCATACTTCACTACAGAATCACCTGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000554221.7 ENST00000556417.6 ENST00000560336.6 ENST00000649691.1 |
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| CDS CAA 72 bp | CCCATGGCCATTTTGCAAGGACTAACTTATTACCTCTaGCCAGAGTGTCCTTCAGCTTTTCTCTTCCCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PMAILQGLTYYL*PECPSAFLFPG Trigger: TCCTGGGAAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGTAATAAGTTAGTCCTTGCAAAATGGCCATGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000554186.2 ENST00000554221.7 |
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| CDS CCA 72 bp | ACATCTCATCAAGGGAGAGGGGATACTTTCCCTTCTTaGATGCCACATGTAAAGACTGGGGAACCATATGAA | + |
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Preference number: 6 (lower is better) Translates to: TSHQGRGDTFPS*MPHVKTGEPYE Trigger: TTCATATGGTTCCCCAGTCTTTACATGTGGCATCCAAGAAGGGAAAGTATCCCCTCTCCCTTGATGAGATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | ATAGTCATACTCATGGATGGCAGAAGGCAAGAGAGCTaGTGTGGGGGAACTGCCCTTTATAAAACCATCAGA | + |
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Preference number: 6 (lower is better) Translates to: IVILMDGRRQES*CGGTALYKTIR Trigger: TCTGATGGTTTTATAAAGGGCAGTTCCCCCACACAAGCTCTCTTGCCTTCTGCCATCCATGAGTATGACTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000647781.1 |
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| CDS TCA 72 bp | GAAGCAACTGACACAGGAAGTAGAGTAGCCAGGATTTaGACCCAGGTTTTTCCAATGCCAAAGCTCATTCAT | + |
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Preference number: 6 (lower is better) Translates to: EATDTGSRVARI*TQVFPMPKLIH Trigger: ATGAATGAGCTTTGGCATTGGAAAAACCTGGGTTCAAATCCTGGCTACTCTACTTCCTGTGTCAGTTGCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CCA 72 bp | TATAAAATTTGTGAAATTCCCACGAGGCTCTCACCTTaGCCTCTTGCCAGAGTGTCCTTCAGCTTTTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: YKICEIPTRLSP*PLARVSFSFSL Trigger: AAGAGAAAAGCTGAAGGACACTCTGGCAAGAGGCCAAGGTGAGAGCCTCGTGGGAATTTCACAAATTTTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000560336.6 |
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| CDS CAA 72 bp | ACAGCCCTTGGAGGGCAGGAAAAGTATCTTAGAAGGTaGTCTTCTTCTTGGCTCATTCTTAGAAGAGTTACC | + |
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Preference number: 6 (lower is better) Translates to: TALGGQEKYLRR*SSSWLILRRVT Trigger: GGTAACTCTTCTAAGAATGAGCCAAGAAGAAGACAACCTTCTAAGATACTTTTCCTGCCCTCCAAGGGCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000560336.6 ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 90 bp | AATGCCAAAGCTCATTCATTCCCTCATTTGTTTGTAAGTTGGGACTaGTGTTACGGTCTTCAATGGAGGCTGAGGTCCAAGTCACAAGAA | + |
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Preference number: 6 (lower is better) Translates to: NAKAHSFPHLFVSWD*CYGLQWRLRSKSQE Trigger: TTCTTGTGACTTGGACCTCAGCCTCCATTGAAGACCGTAACACAAGTCCCAACTTACAAACAAATGAGGGAATGAATGAGCTTTGGCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000649691.1 ENST00000649892.1 |
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| CDS CAA 72 bp | GATTATGAGATACATTTGCTCCTAGAAAACTTAAGCTaGTGTCAGTTTCACCCACTGTGTCCTGTAATGGCT | + |
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Preference number: 6 (lower is better) Translates to: DYEIHLLLENLS*CQFHPLCPVMA Trigger: AGCCATTACAGGACACAGTGGGTGAAACTGACACAAGCTTAAGTTTTCTAGGAGCAAATGTATCTCATAATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000554186.2 ENST00000554221.7 |
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| CDS CAA 72 bp | GATTTTCTAGCTTCCTCTAGCAACAAGAGGCTACACTaGTTTTTAGTATTCATATCCTGTGGCTCTATTCCC | + |
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Preference number: 6 (lower is better) Translates to: DFLASSSNKRLH*FLVFISCGSIP Trigger: GGGAATAGAGCCACAGGATATGAATACTAAAAACAAGTGTAGCCTCTTGTTGCTAGAGGAAGCTAGAAAATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554186.2 |
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| CDS CAA 72 bp | ACCTCTTGTTCCCTTAATATCTCTCTTCATGAGGCTTaGCAGAAACATGGACAATGGGTTAATTCTCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: TSCSLNISLHEA*QKHGQWVNSPN Trigger: ATTTGGAGAATTAACCCATTGTCCATGTTTCTGCAAAGCCTCATGAAGAGAGATATTAAGGGAACAAGAGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000554186.2 ENST00000554221.7 |
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