Pregenerated sensors for LINC00519 (Homo sapiens)
Ensembl gene IDs: ENSG00000258955Ensembl transcript IDs: ENST00000557518.1, ENST00000669155.1
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTGTCATTAGCTGTGCTGCGGCTTGGCTGTTCTCCCTGCCAACTGTaGTTGTGTCTGCCCTCACTTTCCATAGGACGTGCTGGCAGGCTT | + |
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Preference number: 5 (lower is better) Translates to: LSLAVLRLGCSPCQL*LCLPSLSIGRAGRL Trigger: AAGCCTGCCAGCACGTCCTATGGAAAGTGAGGGCAGACACAACCACAGTTGGCAGGGAGAACAGCCAAGCCGCAGCACAGCTAATGACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS GCA 90 bp | TCCCTGCCAACTGTGGTTGTGTCTGCCCTCACTTTCCATAGGACGTaGTGGCAGGCTTGGTGCTTTACCAAATCACAGCGGCCTTTGTGG | + |
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Preference number: 5 (lower is better) Translates to: SLPTVVVSALTFHRT*WQAWCFTKSQRPLW Trigger: CCACAAAGGCCGCTGTGATTTGGTAAAGCACCAAGCCTGCCAGCACGTCCTATGGAAAGTGAGGGCAGACACAACCACAGTTGGCAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CCA 90 bp | GTGGTTGTGTCTGCCCTCACTTTCCATAGGACGTGCTGGCAGGCTTaGTGCTTTACCAAATCACAGCGGCCTTTGTGGGTCTCTGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: VVVSALTFHRTCWQA*CFTKSQRPLWVSVS Trigger: GCTGACAGAGACCCACAAAGGCCGCTGTGATTTGGTAAAGCACCAAGCCTGCCAGCACGTCCTATGGAAAGTGAGGGCAGACACAACCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CCA 90 bp | CTGCCAACTGTGGTTGTGTCTGCCCTCACTTTCCATAGGACGTGCTaGCAGGCTTGGTGCTTTACCAAATCACAGCGGCCTTTGTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LPTVVVSALTFHRTC*QAWCFTKSQRPLWV Trigger: GACCCACAAAGGCCGCTGTGATTTGGTAAAGCACCAAGCCTGCCAGCACGTCCTATGGAAAGTGAGGGCAGACACAACCACAGTTGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS GCA 90 bp | AAGGGGAAACCCCTTTCACTTGGCTCTCATTCTCCTCTCGTCTGCTaGCATGGTGAGGCATCCGCAGTCACGTGGAACTGTGAGTCCATT | + |
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Preference number: 5 (lower is better) Translates to: KGKPLSLGSHSPLVC*HGEASAVTWNCESI Trigger: AATGGACTCACAGTTCCACGTGACTGCGGATGCCTCACCATGGCAGCAGACGAGAGGAGAATGAGAGCCAAGTGAAAGGGGTTTCCCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS GCA 90 bp | TATAAGGGGAAACCCCTTTCACTTGGCTCTCATTCTCCTCTCGTCTaGTGCCATGGTGAGGCATCCGCAGTCACGTGGAACTGTGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: YKGKPLSLGSHSPLV*CHGEASAVTWNCES Trigger: GGACTCACAGTTCCACGTGACTGCGGATGCCTCACCATGGCAGCAGACGAGAGGAGAATGAGAGCCAAGTGAAAGGGGTTTCCCCTTATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CCA 90 bp | AAGCATTTCTCCAGAGTGGTGACTGTCATTAGCTGTGCTGCGGCTTaGCTGTTCTCCCTGCCAACTGTGGTTGTGTCTGCCCTCACTTTC | + |
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Preference number: 5 (lower is better) Translates to: KHFSRVVTVISCAAA*LFSLPTVVVSALTF Trigger: GAAAGTGAGGGCAGACACAACCACAGTTGGCAGGGAGAACAGCCAAGCCGCAGCACAGCTAATGACAGTCACCACTCTGGAGAAATGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CCA 90 bp | CATTCTCCTCTCGTCTGCTGCCATGGTGAGGCATCCGCAGTCACGTaGAACTGTGAGTCCATTAAACCTCTTTCTTTTGCAAATTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: HSPLVCCHGEASAVT*NCESIKPLSFANCP Trigger: TGGGCAATTTGCAAAAGAAAGAGGTTTAATGGACTCACAGTTCCACGTGACTGCGGATGCCTCACCATGGCAGCAGACGAGAGGAGAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CAA 90 bp | TCATTAGCTGTGCTGCGGCTTGGCTGTTCTCCCTGCCAACTGTGGTaGTGTCTGCCCTCACTTTCCATAGGACGTGCTGGCAGGCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: SLAVLRLGCSPCQLW*CLPSLSIGRAGRLG Trigger: ACCAAGCCTGCCAGCACGTCCTATGGAAAGTGAGGGCAGACACAACCACAGTTGGCAGGGAGAACAGCCAAGCCGCAGCACAGCTAATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS GCA 72 bp | CCCCTTTCACTTGGCTCTCATTCTCCTCTCGTCTGCTaGCATGGTGAGGCATCCGCAGTCACGTGGAACTGT | + |
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Preference number: 6 (lower is better) Translates to: PLSLGSHSPLVC*HGEASAVTWNC Trigger: ACAGTTCCACGTGACTGCGGATGCCTCACCATGGCAGCAGACGAGAGGAGAATGAGAGCCAAGTGAAAGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CCA 72 bp | TCCAGAGTGGTGACTGTCATTAGCTGTGCTGCGGCTTaGCTGTTCTCCCTGCCAACTGTGGTTGTGTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: SRVVTVISCAAA*LFSLPTVVVSA Trigger: GGCAGACACAACCACAGTTGGCAGGGAGAACAGCCAAGCCGCAGCACAGCTAATGACAGTCACCACTCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS GCA 72 bp | AAACCCCTTTCACTTGGCTCTCATTCTCCTCTCGTCTaGTGCCATGGTGAGGCATCCGCAGTCACGTGGAAC | + |
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Preference number: 6 (lower is better) Translates to: KPLSLGSHSPLV*CHGEASAVTWN Trigger: GTTCCACGTGACTGCGGATGCCTCACCATGGCAGCAGACGAGAGGAGAATGAGAGCCAAGTGAAAGGGGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CCA 72 bp | TCTGCCCTCACTTTCCATAGGACGTGCTGGCAGGCTTaGTGCTTTACCAAATCACAGCGGCCTTTGTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: SALTFHRTCWQA*CFTKSQRPLWV Trigger: GACCCACAAAGGCCGCTGTGATTTGGTAAAGCACCAAGCCTGCCAGCACGTCCTATGGAAAGTGAGGGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS TCA 72 bp | CCCTCATATTGTGGGAGGGACCCGGTGGGAGATAATTaGATCATGGGGGTGGCAGTTTCCCCCATACTGTTG | + |
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Preference number: 6 (lower is better) Translates to: PSYCGRDPVGDN*IMGVAVSPILL Trigger: CAACAGTATGGGGGAAACTGCCACCCCCATGATTCAATTATCTCCCACCGGGTCCCTCCCACAATATGAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS GCA 72 bp | ACTGTGGTTGTGTCTGCCCTCACTTTCCATAGGACGTaGTGGCAGGCTTGGTGCTTTACCAAATCACAGCGG | + |
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Preference number: 6 (lower is better) Translates to: TVVVSALTFHRT*WQAWCFTKSQR Trigger: CCGCTGTGATTTGGTAAAGCACCAAGCCTGCCAGCACGTCCTATGGAAAGTGAGGGCAGACACAACCACAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS GCA 72 bp | CTGTCATTAGCTGTGCTGCGGCTTGGCTGTTCTCCCTaGCAACTGTGGTTGTGTCTGCCCTCACTTTCCATA | + |
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Preference number: 6 (lower is better) Translates to: LSLAVLRLGCSP*QLWLCLPSLSI Trigger: TATGGAAAGTGAGGGCAGACACAACCACAGTTGGCAGGGAGAACAGCCAAGCCGCAGCACAGCTAATGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CAA 72 bp | TGGCAGGCTTGGTGCTTTACCAAATCACAGCGGCCTTaGTGGGTCTCTGTCAGCATTTCTTTCCTTTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: WQAWCFTKSQRP*WVSVSISFLLL Trigger: AAGCAAAAGGAAAGAAATGCTGACAGAGACCCACAAAGGCCGCTGTGATTTGGTAAAGCACCAAGCCTGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CAA 90 bp | CATCCGCAGTCACGTGGAACTGTGAGTCCATTAAACCTCTTTCTTTaGCAAATTGCCCAGTCTAGGGTATGTCTTCATCAGCAGCTTGAG | + |
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Preference number: 6 (lower is better) Translates to: HPQSRGTVSPLNLFL*QIAQSRVCLHQQLE Trigger: CTCAAGCTGCTGATGAAGACATACCCTAGACTGGGCAATTTGCAAAAGAAAGAGGTTTAATGGACTCACAGTTCCACGTGACTGCGGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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| CDS CAA 72 bp | TCACGTGGAACTGTGAGTCCATTAAACCTCTTTCTTTaGCAAATTGCCCAGTCTAGGGTATGTCTTCATCAG | + |
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Preference number: 6 (lower is better) Translates to: SRGTVSPLNLFL*QIAQSRVCLHQ Trigger: CTGATGAAGACATACCCTAGACTGGGCAATTTGCAAAAGAAAGAGGTTTAATGGACTCACAGTTCCACGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000557518.1 ENST00000669155.1 |
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