Pregenerated sensors for LINC00518 (Homo sapiens)
Ensembl gene IDs: ENSG00000183674Ensembl transcript IDs: ENST00000472178.1, ENST00000479822.2, ENST00000487130.1, ENST00000491317.1, ENST00000496285.6, ENST00000655125.1, ENST00000656574.1, ENST00000662081.1
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCTCTGAGCCTAAGAGAGGAGCAGTCGAAGAAGGAGGGGAACTGCTaGGCATGGGCTCTGGAAGCCACAGCTCCAGGAAGAGGAAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: ALSLREEQSKKEGNC*AWALEATAPGRGSE Trigger: TTCACTTCCTCTTCCTGGAGCTGTGGCTTCCAGAGCCCATGCTCAGCAGTTCCCCTCCTTCTTCGACTGCTCCTCTCTTAGGCTCAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000496285.6 ENST00000656574.1 |
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| CDS TCA 90 bp | TCTGTCAAACGCTGCTGCTGGGTGGAGCTCCCTGAAGACAGAGAGTaGACCCTTGGTTTTCGCCATGTAGAGGTGAGTGGATGTGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: SVKRCCWVELPEDRE*TLGFRHVEVSGCGG Trigger: TCCACCACATCCACTCACCTCTACATGGCGAAAACCAAGGGTTCACTCTCTGTCTTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000472178.1 ENST00000491317.1 ENST00000496285.6 ENST00000656574.1 |
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| CDS TCA 90 bp | GTTTTGAGCCTAAGAGAGGAGCAGTCGAAGAAGGAGGGGAACTGCTaGGCATGGGCTCTGGAAGCCACAGCTCCAGGAAGAGGAAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: VLSLREEQSKKEGNC*AWALEATAPGRGSE Trigger: TTCACTTCCTCTTCCTGGAGCTGTGGCTTCCAGAGCCCATGCTCAGCAGTTCCCCTCCTTCTTCGACTGCTCCTCTCTTAGGCTCAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS TCA 90 bp | TTACCTCGGTTCTCTGTCATCTTGACAAACTTGCTTCCCAATGTCTaGGTGGCTCTGAGCCTAAGAGAGGAGCAGTCGAAGAAGGAGGGG | + |
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Preference number: 5 (lower is better) Translates to: LPRFSVILTNLLPNV*VALSLREEQSKKEG Trigger: CCCCTCCTTCTTCGACTGCTCCTCTCTTAGGCTCAGAGCCACTCAGACATTGGGAAGCAAGTTTGTCAAGATGACAGAGAACCGAGGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000496285.6 ENST00000656574.1 |
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| CDS CCA 90 bp | CAGAGAGTGAACCCTTGGTTTTCGCCATGTAGAGGTGAGTGGATGTaGTGGAAAACCTGCAGGGAGGTTAGAATCAGGGAGCTCTACCAT | + |
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Preference number: 5 (lower is better) Translates to: QRVNPWFSPCRGEWM*WKTCREVRIRELYH Trigger: ATGGTAGAGCTCCCTGATTCTAACCTCCCTGCAGGTTTTCCACCACATCCACTCACCTCTACATGGCGAAAACCAAGGGTTCACTCTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472178.1 ENST00000656574.1 |
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| CDS TCA 90 bp | GGAAGTGAACAGCTCTGTCAAACGCTGCTGCTGGGTGGAGCTCCCTaGATTGCAAACATTTATTTTCTCACAGTTCCGGAGGCTGGAAGT | + |
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Preference number: 5 (lower is better) Translates to: GSEQLCQTLLLGGAP*IANIYFLTVPEAGS Trigger: ACTTCCAGCCTCCGGAACTGTGAGAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCACTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS GCA 90 bp | CCACAGCTCCAGGAAGAGGAAGTGAACAGCTCTGTCAAACGCTGCTaGTGGGTGGAGCTCCCTGAATTGCAAACATTTATTTTCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: PQLQEEEVNSSVKRC*WVELPELQTFIFSQ Trigger: CTGTGAGAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCACTTCCTCTTCCTGGAGCTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS CCA 90 bp | CCATGTGTCTTTGTCTCTTCAAACTTGAAATGGGTGGCAGGCTGGTaGGACGGGACGAGTAGCCAGATTTTCACTAAGGTTCCATCTAGC | + |
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Preference number: 5 (lower is better) Translates to: PCVFVSSNLKWVAGW*DGTSSQIFTKVPSS Trigger: GCTAGATGGAACCTTAGTGAAAATCTGGCTACTCGTCCCGTCCCACCAGCCTGCCACCCATTTCAAGTTTGAAGAGACAAAGACACATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000487130.1 ENST00000491317.1 ENST00000496285.6 ENST00000655125.1 ENST00000656574.1 ENST00000662081.1 |
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| CDS GCA 90 bp | AAGCCACAGCTCCAGGAAGAGGAAGTGAACAGCTCTGTCAAACGCTaGTGCTGGGTGGAGCTCCCTGAATTGCAAACATTTATTTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: KPQLQEEEVNSSVKR*CWVELPELQTFIFS Trigger: TGAGAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCACTTCCTCTTCCTGGAGCTGTGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS CCA 90 bp | AGAGTGAACCCTTGGTTTTCGCCATGTAGAGGTGAGTGGATGTGGTaGAAAACCTGCAGGGAGGTTAGAATCAGGGAGCTCTACCATTTT | + |
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Preference number: 5 (lower is better) Translates to: RVNPWFSPCRGEWMW*KTCREVRIRELYHF Trigger: AAAATGGTAGAGCTCCCTGATTCTAACCTCCCTGCAGGTTTTCCACCACATCCACTCACCTCTACATGGCGAAAACCAAGGGTTCACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472178.1 ENST00000656574.1 |
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| CDS CCA 90 bp | CAGCTCCAGGAAGAGGAAGTGAACAGCTCTGTCAAACGCTGCTGCTaGGTGGAGCTCCCTGAATTGCAAACATTTATTTTCTCACAGTTC | + |
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Preference number: 5 (lower is better) Translates to: QLQEEEVNSSVKRCC*VELPELQTFIFSQF Trigger: GAACTGTGAGAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCACTTCCTCTTCCTGGAGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS GCA 90 bp | ACATGGTGCCATTCAGTTATTCAGCAAATTCTCACATCTTCCGTGTaGCATGCATTGTTACAGGTTTTGAGCCTAAGAGAGGAGCAGTCG | + |
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Preference number: 5 (lower is better) Translates to: TWCHSVIQQILTSSV*HALLQVLSLREEQS Trigger: CGACTGCTCCTCTCTTAGGCTCAAAACCTGTAACAATGCATGGCACACGGAAGATGTGAGAATTTGCTGAATAACTGAATGGCACCATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS GCA 90 bp | GTGCCATTCAGTTATTCAGCAAATTCTCACATCTTCCGTGTGCCATaGATTGTTACAGGTTTTGAGCCTAAGAGAGGAGCAGTCGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: VPFSYSANSHIFRVP*IVTGFEPKRGAVEE Trigger: TTCTTCGACTGCTCCTCTCTTAGGCTCAAAACCTGTAACAATGCATGGCACACGGAAGATGTGAGAATTTGCTGAATAACTGAATGGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS TCA 90 bp | TTACCTCGGTTCTCTGTCATCTTGACAAACTTGCTTCCCAATGTCTaGGTGGCTCTGAGCCTGAATTGCAAACATTTATTTTCTCACAGT | + |
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Preference number: 5 (lower is better) Translates to: LPRFSVILTNLLPNV*VALSLNCKHLFSHS Trigger: ACTGTGAGAAAATAAATGTTTGCAATTCAGGCTCAGAGCCACTCAGACATTGGGAAGCAAGTTTGTCAAGATGACAGAGAACCGAGGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000487130.1 ENST00000655125.1 |
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| CDS TCA 90 bp | TGCTCCAAATATAGTCACATTGAGGATTATGGCTTCATAATCCTGTaGCTCTGGGGAGAGGACACATTTCAGTCCATAACAAAGCCCTTA | + |
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Preference number: 5 (lower is better) Translates to: CSKYSHIEDYGFIIL*LWGEDTFQSITKPL Trigger: TAAGGGCTTTGTTATGGACTGAAATGTGTCCTCTCCCCAGAGTCACAGGATTATGAAGCCATAATCCTCAATGTGACTATATTTGGAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000496285.6 ENST00000655125.1 |
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| CDS GCA 90 bp | ATTCATTTGCTAGGATGGCCTTCACAAAATACAACCGACCTGAATTaGAAACATTTATTTTCTCACAGTTCCGGAGGCTGGAAGTCCAAG | + |
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Preference number: 5 (lower is better) Translates to: IHLLGWPSQNTTDLN*KHLFSHSSGGWKSK Trigger: CTTGGACTTCCAGCCTCCGGAACTGTGAGAAAATAAATGTTTGCAATTCAGGTCGGTTGTATTTTGTGAAGGCCATCCTAGCAAATGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000496285.6 |
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| CDS TCA 72 bp | CTAAGAGAGGAGCAGTCGAAGAAGGAGGGGAACTGCTaGGCATGGGCTCTGGAAGCCACAGCTCCAGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: LREEQSKKEGNC*AWALEATAPGR Trigger: TCTTCCTGGAGCTGTGGCTTCCAGAGCCCATGCTCAGCAGTTCCCCTCCTTCTTCGACTGCTCCTCTCTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000491317.1 ENST00000496285.6 ENST00000656574.1 ENST00000662081.1 |
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| CDS TCA 72 bp | AGTTCCGGAGGCTGGAAGTCCAAGATGGAGCTGCTGTaGGGGTTGGTTTCCGGTGAGGCCTTTCTTCCTAGC | + |
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Preference number: 6 (lower is better) Translates to: SSGGWKSKMELL*GLVSGEAFLPS Trigger: GCTAGGAAGAAAGGCCTCACCGGAAACCAACCCTCACAGCAGCTCCATCTTGGACTTCCAGCCTCCGGAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000479822.2 ENST00000487130.1 ENST00000491317.1 ENST00000496285.6 ENST00000655125.1 ENST00000662081.1 |
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| CDS GCA 72 bp | CTCACAGTTCCGGAGGCTGGAAGTCCAAGATGGAGCTaGTGTGAGGGTTGGTTTCCGGTGAGGCCTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LTVPEAGSPRWS*CEGWFPVRPFF Trigger: GAAGAAAGGCCTCACCGGAAACCAACCCTCACAGCAGCTCCATCTTGGACTTCCAGCCTCCGGAACTGTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000479822.2 ENST00000487130.1 ENST00000491317.1 ENST00000496285.6 ENST00000655125.1 ENST00000662081.1 |
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| CDS TCA 72 bp | CAGCTCTGTCAAACGCTGCTGCTGGGTGGAGCTCCCTaGAGACAGAGAGTGAACCCTTGGTTTTCGCCATGT | + |
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Preference number: 6 (lower is better) Translates to: QLCQTLLLGGAP*RQRVNPWFSPC Trigger: ACATGGCGAAAACCAAGGGTTCACTCTCTGTCTTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000472178.1 ENST00000491317.1 ENST00000496285.6 ENST00000656574.1 |
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| CDS CCA 72 bp | CCTTGGTTTTCGCCATGTAGAGGTGAGTGGATGTGGTaGAAAACCTGCAGGGAGGTTAGAATCAGGGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: PWFSPCRGEWMW*KTCREVRIREL Trigger: GAGCTCCCTGATTCTAACCTCCCTGCAGGTTTTCCACCACATCCACTCACCTCTACATGGCGAAAACCAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472178.1 ENST00000656574.1 |
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| CDS GCA 72 bp | CTCCAGGAAGAGGAAGTGAACAGCTCTGTCAAACGCTaGTGCTGGGTGGAGCTCCCTGAATTGCAAACATTT | + |
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Preference number: 6 (lower is better) Translates to: LQEEEVNSSVKR*CWVELPELQTF Trigger: AAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCACTTCCTCTTCCTGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS CCA 72 bp | AACCCTTGGTTTTCGCCATGTAGAGGTGAGTGGATGTaGTGGAAAACCTGCAGGGAGGTTAGAATCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: NPWFSPCRGEWM*WKTCREVRIRE Trigger: CTCCCTGATTCTAACCTCCCTGCAGGTTTTCCACCACATCCACTCACCTCTACATGGCGAAAACCAAGGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472178.1 ENST00000656574.1 |
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| CDS CAA 72 bp | CTCACATCTTCCGTGTGCCATGCATTGTTACAGGTTTaGAGCCTAAGAGAGGAGCAGTCGAAGAAGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: LTSSVCHALLQV*SLREEQSKKEG Trigger: CCCCTCCTTCTTCGACTGCTCCTCTCTTAGGCTCAAAACCTGTAACAATGCATGGCACACGGAAGATGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS CAA 90 bp | GTGAACAGCTCTGTCAAACGCTGCTGCTGGGTGGAGCTCCCTGAATaGCAAACATTTATTTTCTCACAGTTCCGGAGGCTGGAAGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: VNSSVKRCCWVELPE*QTFIFSQFRRLEVQ Trigger: TTGGACTTCCAGCCTCCGGAACTGTGAGAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS TCA 72 bp | CAGCTCTGTCAAACGCTGCTGCTGGGTGGAGCTCCCTaGATTGCAAACATTTATTTTCTCACAGTTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: QLCQTLLLGGAP*IANIYFLTVPE Trigger: CTCCGGAACTGTGAGAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS GCA 72 bp | TCGCCATGTAGAGGTGAGTGGATGTGGTGGAAAACCTaGAGGGAGGTTAGAATCAGGGAGCTCTACCATTTT | + |
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Preference number: 6 (lower is better) Translates to: SPCRGEWMWWKT*REVRIRELYHF Trigger: AAAATGGTAGAGCTCCCTGATTCTAACCTCCCTGCAGGTTTTCCACCACATCCACTCACCTCTACATGGCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000472178.1 ENST00000656574.1 |
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| CDS CCA 72 bp | AGAGTGAACCCTTGGTTTTCGCCATGTAGAGGTGAGTaGATGTGGTGGAAAACCTGCAGGGAGGTTAGAATC | + |
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Preference number: 6 (lower is better) Translates to: RVNPWFSPCRGE*MWWKTCREVRI Trigger: GATTCTAACCTCCCTGCAGGTTTTCCACCACATCCACTCACCTCTACATGGCGAAAACCAAGGGTTCACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000472178.1 ENST00000656574.1 |
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| CDS CCA 72 bp | GTCTTTGTCTCTTCAAACTTGAAATGGGTGGCAGGCTaGTGGGACGGGACGAGTAGCCAGATTTTCACTAAG | + |
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Preference number: 6 (lower is better) Translates to: VFVSSNLKWVAG*WDGTSSQIFTK Trigger: CTTAGTGAAAATCTGGCTACTCGTCCCGTCCCACCAGCCTGCCACCCATTTCAAGTTTGAAGAGACAAAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000487130.1 ENST00000491317.1 ENST00000496285.6 ENST00000655125.1 ENST00000656574.1 ENST00000662081.1 |
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| CDS CAA 72 bp | TCTGTCAAACGCTGCTGCTGGGTGGAGCTCCCTGAATaGCAAACATTTATTTTCTCACAGTTCCGGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SVKRCCWVELPE*QTFIFSQFRRL Trigger: CAGCCTCCGGAACTGTGAGAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS GCA 72 bp | CAGGAAGAGGAAGTGAACAGCTCTGTCAAACGCTGCTaGTGGGTGGAGCTCCCTGAATTGCAAACATTTATT | + |
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Preference number: 6 (lower is better) Translates to: QEEEVNSSVKRC*WVELPELQTFI Trigger: AATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCACTTCCTCTTCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS CCA 72 bp | TTTGTCTCTTCAAACTTGAAATGGGTGGCAGGCTGGTaGGACGGGACGAGTAGCCAGATTTTCACTAAGGTT | + |
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Preference number: 6 (lower is better) Translates to: FVSSNLKWVAGW*DGTSSQIFTKV Trigger: AACCTTAGTGAAAATCTGGCTACTCGTCCCGTCCCACCAGCCTGCCACCCATTTCAAGTTTGAAGAGACAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 8 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000487130.1 ENST00000491317.1 ENST00000496285.6 ENST00000655125.1 ENST00000656574.1 ENST00000662081.1 |
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| CDS TCA 72 bp | CATGTAGAGGTGAGTGGATGTGGTGGAAAACCCCTTTaGTCCTCAGCGGTCTCATTAGTAACACAGATGGAA | + |
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Preference number: 6 (lower is better) Translates to: HVEVSGCGGKPL*SSAVSLVTQME Trigger: TTCCATCTGTGTTACTAATGAGACCGCTGAGGATCAAAGGGGTTTTCCACCACATCCACTCACCTCTACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000496285.6 |
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| CDS CCA 72 bp | GAAGAGGAAGTGAACAGCTCTGTCAAACGCTGCTGCTaGGTGGAGCTCCCTGAATTGCAAACATTTATTTTC | + |
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Preference number: 6 (lower is better) Translates to: EEEVNSSVKRCC*VELPELQTFIF Trigger: GAAAATAAATGTTTGCAATTCAGGGAGCTCCACCCAGCAGCAGCGTTTGACAGAGCTGTTCACTTCCTCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000479822.2 ENST00000662081.1 |
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| CDS CAA 72 bp | ATTCAGCAAATTCTCACATCTTCCGTGTGCCATGCATaGTTACAGGTTTTGAGCCTAAGAGAGGAGCAGTCG | + |
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Preference number: 6 (lower is better) Translates to: IQQILTSSVCHA*LQVLSLREEQS Trigger: CGACTGCTCCTCTCTTAGGCTCAAAACCTGTAACAATGCATGGCACACGGAAGATGTGAGAATTTGCTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS CAA 90 bp | CATTCAGTTATTCAGCAAATTCTCACATCTTCCGTGTGCCATGCATaGTTACAGGTTTTGAGCCTAAGAGAGGAGCAGTCGAAGAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: HSVIQQILTSSVCHA*LQVLSLREEQSKKE Trigger: CTCCTTCTTCGACTGCTCCTCTCTTAGGCTCAAAACCTGTAACAATGCATGGCACACGGAAGATGTGAGAATTTGCTGAATAACTGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS TCA 72 bp | GTCGTCACTTTGGAGGTGTGGCCAAAAACTCATGAATaGACTTCCTGTTTCATCACTCGAATCCATTACCTC | + |
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Preference number: 6 (lower is better) Translates to: VVTLEVWPKTHE*TSCFITRIHYL Trigger: GAGGTAATGGATTCGAGTGATGAAACAGGAAGTTCATTCATGAGTTTTTGGCCACACCTCCAAAGTGACGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 8 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000487130.1 ENST00000491317.1 ENST00000496285.6 ENST00000655125.1 ENST00000656574.1 ENST00000662081.1 |
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| CDS CCA 72 bp | AACCCAGTTATCCCATTTCTGGCTAAGTCGTCACTTTaGAGGTGTGGCCAAAAACTCATGAATGAACTTCCT | + |
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Preference number: 6 (lower is better) Translates to: NPVIPFLAKSSL*RCGQKLMNELP Trigger: AGGAAGTTCATTCATGAGTTTTTGGCCACACCTCCAAAGTGACGACTTAGCCAGAAATGGGATAACTGGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 8 transcripts: ENST00000472178.1 ENST00000479822.2 ENST00000487130.1 ENST00000491317.1 ENST00000496285.6 ENST00000655125.1 ENST00000656574.1 ENST00000662081.1 |
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| CDS CAA 72 bp | GCTAGGATGGCCTTCACAAAATACAACCGACCTGAATaGCAAACATTTATTTTCTCACAGTTCCGGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ARMAFTKYNRPE*QTFIFSQFRRL Trigger: CAGCCTCCGGAACTGTGAGAAAATAAATGTTTGCAATTCAGGTCGGTTGTATTTTGTGAAGGCCATCCTAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000496285.6 |
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| CDS GCA 72 bp | AGTTATTCAGCAAATTCTCACATCTTCCGTGTGCCATaGATTGTTACAGGTTTTGAGCCTAAGAGAGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: SYSANSHIFRVP*IVTGFEPKRGA Trigger: TGCTCCTCTCTTAGGCTCAAAACCTGTAACAATGCATGGCACACGGAAGATGTGAGAATTTGCTGAATAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS TCA 72 bp | TATAGTCACATTGAGGATTATGGCTTCATAATCCTGTaGCTCTGGGGAGAGGACACATTTCAGTCCATAACA | + |
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Preference number: 6 (lower is better) Translates to: YSHIEDYGFIIL*LWGEDTFQSIT Trigger: TGTTATGGACTGAAATGTGTCCTCTCCCCAGAGTCACAGGATTATGAAGCCATAATCCTCAATGTGACTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000496285.6 ENST00000655125.1 |
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| CDS GCA 72 bp | CATTCAGTTATTCAGCAAATTCTCACATCTTCCGTGTaGCATGCATTGTTACAGGTTTTGAGCCTAAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: HSVIQQILTSSV*HALLQVLSLRE Trigger: CTCTCTTAGGCTCAAAACCTGTAACAATGCATGGCACACGGAAGATGTGAGAATTTGCTGAATAACTGAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000662081.1 |
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| CDS CAA 90 bp | TATTCATTTGCTAGGATGGCCTTCACAAAATACAACCGACCTGAATaGCAAACATTTATTTTCTCACAGTTCCGGAGGCTGGAAGTCCAA | + |
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Preference number: 6 (lower is better) Translates to: YSFARMAFTKYNRPE*QTFIFSQFRRLEVQ Trigger: TTGGACTTCCAGCCTCCGGAACTGTGAGAAAATAAATGTTTGCAATTCAGGTCGGTTGTATTTTGTGAAGGCCATCCTAGCAAATGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000491317.1 ENST00000496285.6 |
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