Pregenerated sensors for LINC00517 (Homo sapiens)
Ensembl gene IDs: ENSG00000259091Ensembl transcript IDs: ENST00000553396.1, ENST00000554257.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTGGTGGTGGCGGTGGCTAGGCAGCTTCCTGGGAGCACTTCTTCCTaGCGTTCTCCTTACAACCCACCAGGAGCCTGTCCTGGCGGGCGC | + |
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Preference number: 5 (lower is better) Translates to: VVVAVARQLPGSTSS*RSPYNPPGACPGGR Trigger: GCGCCCGCCAGGACAGGCTCCTGGTGGGTTGTAAGGAGAACGGCAGGAAGAAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553396.1 ENST00000554257.1 |
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| CDS GCA 90 bp | AACCCACCAGGAGCCTGTCCTGGCGGGCGCTTTAGAAGGCAGGACTaGCTTGGGATGCATTGGGTTTTTCCACCCACACTAGTTCCCGCC | + |
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Preference number: 5 (lower is better) Translates to: NPPGACPGGRFRRQD*LGMHWVFPPTLVPA Trigger: GGCGGGAACTAGTGTGGGTGGAAAAACCCAATGCATCCCAAGGCAGTCCTGCCTTCTAAAGCGCCCGCCAGGACAGGCTCCTGGTGGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 90 bp | GGTTGCTTTGCTGTTCTTTCCTGGGAGCAGCTCGCAGGAGATGCCTaGAAGCGGGCTGGCTGTGTCCTCAGGGCTGAGTTTGCAGACTGC | + |
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Preference number: 5 (lower is better) Translates to: GCFAVLSWEQLAGDA*KRAGCVLRAEFADC Trigger: GCAGTCTGCAAACTCAGCCCTGAGGACACAGCCAGCCCGCTTCCAGGCATCTCCTGCGAGCTGCTCCCAGGAAAGAACAGCAAAGCAACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 90 bp | CAGCAAAACTGTGGGCAGTTGGATGGAACCCTGTGGTGGTGGCGGTaGCTAGGCAGCTTCCTGGGAGCACTTCTTCCTGCCGTTCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: QQNCGQLDGTLWWWR*LGSFLGALLPAVLL Trigger: AAGGAGAACGGCAGGAAGAAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGCCCACAGTTTTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 90 bp | TGTCCTGGCGGGCGCTTTAGAAGGCAGGACTGCCTTGGGATGCATTaGGTTTTTCCACCCACACTAGTTCCCGCCCTTTGGGGACAGGAA | + |
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Preference number: 5 (lower is better) Translates to: CPGGRFRRQDCLGMH*VFPPTLVPALWGQE Trigger: TTCCTGTCCCCAAAGGGCGGGAACTAGTGTGGGTGGAAAAACCCAATGCATCCCAAGGCAGTCCTGCCTTCTAAAGCGCCCGCCAGGACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 90 bp | CTAGTTCAGCAAAACTGTGGGCAGTTGGATGGAACCCTGTGGTGGTaGCGGTGGCTAGGCAGCTTCCTGGGAGCACTTCTTCCTGCCGTT | + |
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Preference number: 5 (lower is better) Translates to: LVQQNCGQLDGTLWW*RWLGSFLGALLPAV Trigger: AACGGCAGGAAGAAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGCCCACAGTTTTGCTGAACTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 90 bp | GAACAGCATGTCTACACTGGACCAGGTTGCTTTGCTGTTCTTTCCTaGGAGCAGCTCGCAGGAGATGCCTGGAAGCGGGCTGGCTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: EQHVYTGPGCFAVLS*EQLAGDAWKRAGCV Trigger: GACACAGCCAGCCCGCTTCCAGGCATCTCCTGCGAGCTGCTCCCAGGAAAGAACAGCAAAGCAACCTGGTCCAGTGTAGACATGCTGTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 90 bp | CCTGATGCCATAAGTCAGTTGGATGGAACCCTGTGGTGGTGGCGGTaGCTAGGCAGCTTCCTGGGAGCACTTCTTCCTGCCGTTCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: PDAISQLDGTLWWWR*LGSFLGALLPAVLL Trigger: AAGGAGAACGGCAGGAAGAAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGACTTATGGCATCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 90 bp | AAAGCTCCTGATGCCATAAGTCAGTTGGATGGAACCCTGTGGTGGTaGCGGTGGCTAGGCAGCTTCCTGGGAGCACTTCTTCCTGCCGTT | + |
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Preference number: 5 (lower is better) Translates to: KAPDAISQLDGTLWW*RWLGSFLGALLPAV Trigger: AACGGCAGGAAGAAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGACTTATGGCATCAGGAGCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS TCA 90 bp | TGTTTAGTGTTTAGACTGACCTATAAGTTCCTGCGCTGTCCTGAATaGAGCCTTGCAGGATGGAAATATGGCAAGGTTGCCAGCTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: CLVFRLTYKFLRCPE*SLAGWKYGKVASWA Trigger: AGCCCAGCTGGCAACCTTGCCATATTTCCATCCTGCAAGGCTTCATTCAGGACAGCGCAGGAACTTATAGGTCAGTCTAAACACTAAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS GCA 90 bp | CAGAGCCTAGGCAGGAGAAGTCTGTGGGTCTTCTTGAAAAAGAATTaGCCTGTCCATGTGGCATTTGTGCTTCCTGATGAACTGCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: QSLGRRSLWVFLKKN*PVHVAFVLPDELLD Trigger: ATCAAGCAGTTCATCAGGAAGCACAAATGCCACATGGACAGGGCAATTCTTTTTCAAGAAGACCCACAGACTTCTCCTGCCTAGGCTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 90 bp | TGTCCGGGAAGCAGTGGTGGGAAACGGGTAAAAATATTCTCCACATaGGGTCTCCACTTCTCTGGCATCAATAATCCAAGCTACAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: CPGSSGGKRVKIFST*GLHFSGINNPSYKF Trigger: GAACTTGTAGCTTGGATTATTGATGCCAGAGAAGTGGAGACCCCATGTGGAGAATATTTTTACCCGTTTCCCACCACTGCTTCCCGGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 90 bp | AGTTTGCAGACTGCCGGTTTAAAATGGAGATCTGCTGAGCCATTGTaGAAGAAAGTTCTCAGGACAATTCCTAGTTCAGCAAAACTGTGG | + |
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Preference number: 5 (lower is better) Translates to: SLQTAGLKWRSAEPL*KKVLRTIPSSAKLW Trigger: CCACAGTTTTGCTGAACTAGGAATTGTCCTGAGAACTTTCTTCCACAATGGCTCAGCAGATCTCCATTTTAAACCGGCAGTCTGCAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS GCA 90 bp | TTGGAAGGTGTTCAGGGCAAGGATGCAACACTTTCTCAGGGAATGTaGTGGAGACAATTTTTGGAGTACAGAAAACTTGATAGCTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: LEGVQGKDATLSQGM*WRQFLEYRKLDSFH Trigger: ATGGAAGCTATCAAGTTTTCTGTACTCCAAAAATTGTCTCCAGCACATTCCCTGAGAAAGTGTTGCATCCTTGCCCTGAACACCTTCCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS GCA 90 bp | AAAAGAATTGCCCTGTCCATGTGGCATTTGTGCTTCCTGATGAACTaGTTGATCATACTTTCCCTGAAATTTGAGAGCCATGGTTCTAGT | + |
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Preference number: 5 (lower is better) Translates to: KRIALSMWHLCFLMN*LIILSLKFESHGSS Trigger: ACTAGAACCATGGCTCTCAAATTTCAGGGAAAGTATGATCAAGCAGTTCATCAGGAAGCACAAATGCCACATGGACAGGGCAATTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS TCA 90 bp | AATAAAAGTGGAGGAATGAAGTGGATGGAGACTTGGGTGGTAGCATaGCTTCCCCGAGTATACCTTTACATTGCTTTGAGTTTGAAACAA | + |
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Preference number: 5 (lower is better) Translates to: NKSGGMKWMETWVVA*LPRVYLYIALSLKQ Trigger: TTGTTTCAAACTCAAAGCAATGTAAAGGTATACTCGGGGAAGTCATGCTACCACCCAAGTCTCCATCCACTTCATTCCTCCACTTTTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS GCA 90 bp | GGGGTCTCCACTTCTCTGGCATCAATAATCCAAGCTACAAGTTCTTaGTATTCTTTATCTTTGTCCTTACTGTGCCTAAATTTATCTTTA | + |
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Preference number: 5 (lower is better) Translates to: GVSTSLASIIQATSS*YSLSLSLLCLNLSL Trigger: TAAAGATAAATTTAGGCACAGTAAGGACAAAGATAAAGAATAGCAAGAACTTGTAGCTTGGATTATTGATGCCAGAGAAGTGGAGACCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 72 bp | CAGCAAAACTGTGGGCAGTTGGATGGAACCCTGTGGTaGTGGCGGTGGCTAGGCAGCTTCCTGGGAGCACTT | + |
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Preference number: 6 (lower is better) Translates to: QQNCGQLDGTLW*WRWLGSFLGAL Trigger: AAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGCCCACAGTTTTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 72 bp | CAAAACTGTGGGCAGTTGGATGGAACCCTGTGGTGGTaGCGGTGGCTAGGCAGCTTCCTGGGAGCACTTCTT | + |
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Preference number: 6 (lower is better) Translates to: QNCGQLDGTLWW*RWLGSFLGALL Trigger: AAGAAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGCCCACAGTTTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CCA 72 bp | CCTGATGCCATAAGTCAGTTGGATGGAACCCTGTGGTaGTGGCGGTGGCTAGGCAGCTTCCTGGGAGCACTT | + |
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Preference number: 6 (lower is better) Translates to: PDAISQLDGTLW*WRWLGSFLGAL Trigger: AAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGACTTATGGCATCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 72 bp | GATGCCATAAGTCAGTTGGATGGAACCCTGTGGTGGTaGCGGTGGCTAGGCAGCTTCCTGGGAGCACTTCTT | + |
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Preference number: 6 (lower is better) Translates to: DAISQLDGTLWW*RWLGSFLGALL Trigger: AAGAAGTGCTCCCAGGAAGCTGCCTAGCCACCGCCACCACCACAGGGTTCCATCCAACTGACTTATGGCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 90 bp | ACCACAGATGATTTGAACAGCATGTCTACACTGGACCAGGTTGCTTaGCTGTTCTTTCCTGGGAGCAGCTCGCAGGAGATGCCTGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: TTDDLNSMSTLDQVA*LFFPGSSSQEMPGS Trigger: GCTTCCAGGCATCTCCTGCGAGCTGCTCCCAGGAAAGAACAGCAAAGCAACCTGGTCCAGTGTAGACATGCTGTTCAAATCATCTGTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CAA 90 bp | TGCGCTGTCCTGAATGAAGCCTTGCAGGATGGAAATATGGCAAGGTaGCCAGCTGGGCTATACTCACAGGGGTCCCAGATTATCTCTGTC | + |
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Preference number: 6 (lower is better) Translates to: CAVLNEALQDGNMAR*PAGLYSQGSQIISV Trigger: GACAGAGATAATCTGGGACCCCTGTGAGTATAGCCCAGCTGGCAACCTTGCCATATTTCCATCCTGCAAGGCTTCATTCAGGACAGCGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 72 bp | AGCCTTGCAGGATGGAAATATGGCAAGGTTGCCAGCTaGGCTATACTCACAGGGGTCCCAGATTATCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: SLAGWKYGKVAS*AILTGVPDYLC Trigger: ACAGAGATAATCTGGGACCCCTGTGAGTATAGCCCAGCTGGCAACCTTGCCATATTTCCATCCTGCAAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 72 bp | CTGAATGAAGCCTTGCAGGATGGAAATATGGCAAGGTaGCCAGCTGGGCTATACTCACAGGGGTCCCAGATT | + |
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Preference number: 6 (lower is better) Translates to: LNEALQDGNMAR*PAGLYSQGSQI Trigger: AATCTGGGACCCCTGTGAGTATAGCCCAGCTGGCAACCTTGCCATATTTCCATCCTGCAAGGCTTCATTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS TCA 72 bp | TCCTGTAGCTTCAGACAAGTTCCACCTCTTGGTGGGTaGACAGGCTGGAATGGTCTAGCATTGAGTATTCCT | + |
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Preference number: 6 (lower is better) Translates to: SCSFRQVPPLGG*TGWNGLALSIP Trigger: AGGAATACTCAATGCTAGACCATTCCAGCCTGTTCACCCACCAAGAGGTGGAACTTGTCTGAAGCTACAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 72 bp | TCCTCAGGGCTGAGTTTGCAGACTGCCGGTTTAAAATaGAGATCTGCTGAGCCATTGTGGAAGAAAGTTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSGLSLQTAGLK*RSAEPLWKKVL Trigger: GAGAACTTTCTTCCACAATGGCTCAGCAGATCTCCATTTTAAACCGGCAGTCTGCAAACTCAGCCCTGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CAA 90 bp | AGTTTCTGGAACATTATAACAACTAAAGAGTCTGCTACAGGAAACTaGGAAGAGCCTCCAAGGCGGCCAGTTGTCTGTGGTGTTGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: SFWNIITTKESATGN*EEPPRRPVVCGVGE Trigger: TTCCCCAACACCACAGACAACTGGCCGCCTTGGAGGCTCTTCCAAGTTTCCTGTAGCAGACTCTTTAGTTGTTATAATGTTCCAGAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS TCA 72 bp | GGAGGAATGAAGTGGATGGAGACTTGGGTGGTAGCATaGCTTCCCCGAGTATACCTTTACATTGCTTTGAGT | + |
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Preference number: 6 (lower is better) Translates to: GGMKWMETWVVA*LPRVYLYIALS Trigger: ACTCAAAGCAATGTAAAGGTATACTCGGGGAAGTCATGCTACCACCCAAGTCTCCATCCACTTCATTCCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS TCA 72 bp | TTTAGACTGACCTATAAGTTCCTGCGCTGTCCTGAATaGAGCCTTGCAGGATGGAAATATGGCAAGGTTGCC | + |
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Preference number: 6 (lower is better) Translates to: FRLTYKFLRCPE*SLAGWKYGKVA Trigger: GGCAACCTTGCCATATTTCCATCCTGCAAGGCTTCATTCAGGACAGCGCAGGAACTTATAGGTCAGTCTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 90 bp | AACAGGCTGGAATGGTCTAGCATTGAGTATTCCTTAGTCATTCTGTaGGAAGGTGTTCAGGGCAAGGATGCAACACTTTCTCAGGGAATG | + |
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Preference number: 6 (lower is better) Translates to: NRLEWSSIEYSLVIL*EGVQGKDATLSQGM Trigger: CATTCCCTGAGAAAGTGTTGCATCCTTGCCCTGAACACCTTCCAACAGAATGACTAAGGAATACTCAATGCTAGACCATTCCAGCCTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS TCA 72 bp | GAGTTTGCAGACTGCCGGTTTAAAATGGAGATCTGCTaGGCCATTGTGGAAGAAAGTTCTCAGGACAATTCC | + |
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Preference number: 6 (lower is better) Translates to: EFADCRFKMEIC*AIVEESSQDNS Trigger: GGAATTGTCCTGAGAACTTTCTTCCACAATGGCTCAGCAGATCTCCATTTTAAACCGGCAGTCTGCAAACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS GCA 72 bp | GCCCTGTCCATGTGGCATTTGTGCTTCCTGATGAACTaGTTGATCATACTTTCCCTGAAATTTGAGAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: ALSMWHLCFLMN*LIILSLKFESH Trigger: ATGGCTCTCAAATTTCAGGGAAAGTATGATCAAGCAGTTCATCAGGAAGCACAAATGCCACATGGACAGGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 72 bp | ACAAGTTCCACCTCTTGGTGGGTGAACAGGCTGGAATaGTCTAGCATTGAGTATTCCTTAGTCATTCTGTTG | + |
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Preference number: 6 (lower is better) Translates to: TSSTSWWVNRLE*SSIEYSLVILL Trigger: CAACAGAATGACTAAGGAATACTCAATGCTAGACCATTCCAGCCTGTTCACCCACCAAGAGGTGGAACTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 72 bp | GGAATTCCTCCAGATACAACAGTAATTCAGTTCACATaGCTCATCAACGTGCAGGCCACATGTCTCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: GIPPDTTVIQFT*LINVQATCLWM Trigger: CATCCAGAGACATGTGGCCTGCACGTTGATGAGCAATGTGAACTGAATTACTGTTGTATCTGGAGGAATTCC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CAA 72 bp | AACATTATAACAACTAAAGAGTCTGCTACAGGAAACTaGGAAGAGCCTCCAAGGCGGCCAGTTGTCTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: NIITTKESATGN*EEPPRRPVVCG Trigger: ACCACAGACAACTGGCCGCCTTGGAGGCTCTTCCAAGTTTCCTGTAGCAGACTCTTTAGTTGTTATAATGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 90 bp | CTCTTTTATGGAATTCCTCCAGATACAACAGTAATTCAGTTCACATaGCTCATCAACGTGCAGGCCACATGTCTCTGGATGGTCCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: LFYGIPPDTTVIQFT*LINVQATCLWMVPV Trigger: TACAGGGACCATCCAGAGACATGTGGCCTGCACGTTGATGAGCAATGTGAACTGAATTACTGTTGTATCTGGAGGAATTCCATAAAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS CAA 90 bp | CTGAGTTTGCAGACTGCCGGTTTAAAATGGAGATCTGCTGAGCCATaGTGGAAGAAAGTTCTCAGGACAATTCCTAGTTCAGCAAAACTG | + |
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Preference number: 6 (lower is better) Translates to: LSLQTAGLKWRSAEP*WKKVLRTIPSSAKL Trigger: CAGTTTTGCTGAACTAGGAATTGTCCTGAGAACTTTCTTCCACAATGGCTCAGCAGATCTCCATTTTAAACCGGCAGTCTGCAAACTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000553396.1 |
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| CDS TCA 72 bp | GTACAACATTGTGATGTAGCAGAAAGGTCAATAAGCTaGGAGAGAGGAGACATGGGCCCAGTTTTACCACAA | + |
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Preference number: 6 (lower is better) Translates to: VQHCDVAERSIS*ERGDMGPVLPQ Trigger: TTGTGGTAAAACTGGGCCCATGTCTCCTCTCTCTCAGCTTATTGACCTTTCTGCTACATCACAATGTTGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 90 bp | AGAATTGCCCTGTCCATGTGGCATTTGTGCTTCCTGATGAACTGCTaGATCATACTTTCCCTGAAATTTGAGAGCCATGGTTCTAGTCTA | + |
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Preference number: 6 (lower is better) Translates to: RIALSMWHLCFLMNC*IILSLKFESHGSSL Trigger: TAGACTAGAACCATGGCTCTCAAATTTCAGGGAAAGTATGATCAAGCAGTTCATCAGGAAGCACAAATGCCACATGGACAGGGCAATTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS GCA 72 bp | GTTCAGGGCAAGGATGCAACACTTTCTCAGGGAATGTaGTGGAGACAATTTTTGGAGTACAGAAAACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: VQGKDATLSQGM*WRQFLEYRKLD Trigger: ATCAAGTTTTCTGTACTCCAAAAATTGTCTCCAGCACATTCCCTGAGAAAGTGTTGCATCCTTGCCCTGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 72 bp | GAATGGTCTAGCATTGAGTATTCCTTAGTCATTCTGTaGGAAGGTGTTCAGGGCAAGGATGCAACACTTTCT | + |
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Preference number: 6 (lower is better) Translates to: EWSSIEYSLVIL*EGVQGKDATLS Trigger: AGAAAGTGTTGCATCCTTGCCCTGAACACCTTCCAACAGAATGACTAAGGAATACTCAATGCTAGACCATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CCA 72 bp | ATTAAACTTAAGCAAAAAGGGCCGCTTAGTTTTAACTaGCCAAATAGTGGCATCGAATCTCAGAGAGGACCA | + |
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Preference number: 6 (lower is better) Translates to: IKLKQKGPLSFN*PNSGIESQRGP Trigger: TGGTCCTCTCTGAGATTCGATGCCACTATTTGGCCAGTTAAAACTAAGCGGCCCTTTTTGCTTAAGTTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 72 bp | AGGCTGCCATACAGATCAGAGGTTTCACACGTTCCTTaGATTAGGCAAACTCACTCAAGGCAATTAACAAAA | + |
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Preference number: 6 (lower is better) Translates to: RLPYRSEVSHVP*IRQTHSRQLTK Trigger: TTTTGTTAATTGCCTTGAGTGAGTTTGCCTAATCAAAGGAACGTGTGAAACCTCTGATCTGTATGGCAGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 90 bp | GAAATCTTAAGGCTGCCATACAGATCAGAGGTTTCACACGTTCCTTaGATTAGGCAAACTCACTCAAGGCAATTAACAAAAGAGTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: EILRLPYRSEVSHVP*IRQTHSRQLTKEFR Trigger: CCTGAACTCTTTTGTTAATTGCCTTGAGTGAGTTTGCCTAATCAAAGGAACGTGTGAAACCTCTGATCTGTATGGCAGCCTTAAGATTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 72 bp | TCAACTAAATCTCAGATGTCCAATTTGTGCAGCCTGTaGATGATATTATTCAGTGAAAAATGGTTGGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: STKSQMSNLCSL*MILFSEKWLGR Trigger: TCTCCCCAACCATTTTTCACTGAATAATATCATCAACAGGCTGCACAAATTGGACATCTGAGATTTAGTTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 90 bp | GTTACTAATTCAACTAAATCTCAGATGTCCAATTTGTGCAGCCTGTaGATGATATTATTCAGTGAAAAATGGTTGGGGAGATTGGGAATG | + |
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Preference number: 6 (lower is better) Translates to: VTNSTKSQMSNLCSL*MILFSEKWLGRLGM Trigger: CATTCCCAATCTCCCCAACCATTTTTCACTGAATAATATCATCAACAGGCTGCACAAATTGGACATCTGAGATTTAGTTGAATTAGTAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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| CDS CAA 90 bp | GATCTTTTAGGTGTTACTAATTCAACTAAATCTCAGATGTCCAATTaGTGCAGCCTGTTGATGATATTATTCAGTGAAAAATGGTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: DLLGVTNSTKSQMSN*CSLLMILFSEKWLG Trigger: CCCCAACCATTTTTCACTGAATAATATCATCAACAGGCTGCACAAATTGGACATCTGAGATTTAGTTGAATTAGTAACACCTAAAAGATC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000554257.1 |
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