Pregenerated sensors for LINC00513 (Homo sapiens)
Ensembl gene IDs: ENSG00000233559Ensembl transcript IDs: ENST00000447430.1, ENST00000653887.1, ENST00000664231.1, ENST00000666086.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGAGTCCGTATGCTGGTTACTCACCAGCAACTGAGTGTTGGCAGGTaGAGAATGCTACCGCAGCCCGCCCAGACGGATCTGCAGACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: RVRMLVTHQQLSVGR*RMLPQPAQTDLQTG Trigger: GCCAGTCTGCAGATCCGTCTGGGCGGGCTGCGGTAGCATTCTCCACCTGCCAACACTCAGTTGCTGGTGAGTAACCAGCATACGGACTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664231.1 |
||
| CDS CCA 90 bp | CTTCTAGAGGCTGGGGGCCAGCGGGGCAGGGAGGTGATCTCATCATaGATGGCCACAGATCATCCACCTGCCAAACAGTTAACCCTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: LLEAGGQRGREVISS*MATDHPPAKQLTLN Trigger: GTTCAGGGTTAACTGTTTGGCAGGTGGATGATCTGTGGCCATCCATGATGAGATCACCTCCCTGCCCCGCTGGCCCCCAGCCTCTAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000653887.1 ENST00000664231.1 ENST00000666086.1 |
||
| CDS CCA 90 bp | GGAAGTGAGAGTCCGTATGCTGGTTACTCACCAGCAACTGAGTGTTaGCAGGTGGAGAATGCTACCGCAGCCCGCCCAGACGGATCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: GSESPYAGYSPATEC*QVENATAARPDGSA Trigger: TGCAGATCCGTCTGGGCGGGCTGCGGTAGCATTCTCCACCTGCCAACACTCAGTTGCTGGTGAGTAACCAGCATACGGACTCTCACTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664231.1 |
||
| CDS TCA 90 bp | ATGTCCTGGATTCAGCGGGTCACAGCTGACTGCCATCAGGAGGTGTaGCGGAGAAGGTTCCATTTCTGTGACCCTGTGGTGATACAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: MSWIQRVTADCHQEV*RRRFHFCDPVVIQV Trigger: GACCTGTATCACCACAGGGTCACAGAAATGGAACCTTCTCCGTCACACCTCCTGATGGCAGTCAGCTGTGACCCGCTGAATCCAGGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS TCA 90 bp | AGTCAAGCCCCCGCCAGGGAAAACACAATCTGCTCTGAGGGCCTTTaGCAAACTGACATGGGCACTAGGACTAGGTCATGGATCATTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SQAPARENTICSEGL*QTDMGTRTRSWIIG Trigger: GCCAATGATCCATGACCTAGTCCTAGTGCCCATGTCAGTTTGTCAAAGGCCCTCAGAGCAGATTGTGTTTTCCCTGGCGGGGGCTTGACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000447430.1 |
||
| CDS TCA 90 bp | GAGACCACTCTCTCTCCTGCCTGTAGTTTCAGCTACTCTGGAGGCTaGGATGAAGTGAGACCCTGCCTAGGAAGTGAGAGTCCGTATGCT | + |
|
Preference number: 5 (lower is better) Translates to: ETTLSPACSFSYSGG*DEVRPCLGSESPYA Trigger: AGCATACGGACTCTCACTTCCTAGGCAGGGTCTCACTTCATCTCAGCCTCCAGAGTAGCTGAAACTACAGGCAGGAGAGAGAGTGGTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664231.1 |
||
| CDS TCA 90 bp | CAAACTGACATGGGCACTAGGACTAGGTCATGGATCATTGGCCCTTaGTTCTGTCTCCCACTGAGCATCCCAAAGGGGTTGAGACCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: QTDMGTRTRSWIIGP*FCLPLSIPKGLRPL Trigger: CAGAGGTCTCAACCCCTTTGGGATGCTCAGTGGGAGACAGAATCAAGGGCCAATGATCCATGACCTAGTCCTAGTGCCCATGTCAGTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447430.1 |
||
| CDS GCA 90 bp | AGGCTTCAGCCGGACCTGGAAATGTTCTCGCAAATGAAACTGGAATaGATGATGTCCTGGATTCAGCGGGTCACAGCTGACTGCCATCAG | + |
|
Preference number: 5 (lower is better) Translates to: RLQPDLEMFSQMKLE*MMSWIQRVTADCHQ Trigger: CTGATGGCAGTCAGCTGTGACCCGCTGAATCCAGGACATCATGCATTCCAGTTTCATTTGCGAGAACATTTCCAGGTCCGGCTGAAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447430.1 |
||
| CDS TCA 90 bp | GTGAAGATTAAACGAATGGACGGATGTGTAGCTTGTGGTAGCGCCTaGGCTGGCCCTGCATGTCAGTGTGCTGTTCTCGCTGATGATGAA | + |
|
Preference number: 5 (lower is better) Translates to: VKIKRMDGCVACGSA*AGPACQCAVLADDE Trigger: TTCATCATCAGCGAGAACAGCACACTGACATGCAGGGCCAGCTCAGGCGCTACCACAAGCTACACATCCGTCCATTCGTTTAATCTTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000447430.1 ENST00000653887.1 ENST00000664231.1 |
||
| CDS GCA 90 bp | ATACCTCCAGGGGATCTGGAAATGTTCTCGCAAATGAAACTGGAATaGATGATGTCCTGGATTCAGCGGGTCACAGCTGACTGCCATCAG | + |
|
Preference number: 5 (lower is better) Translates to: IPPGDLEMFSQMKLE*MMSWIQRVTADCHQ Trigger: CTGATGGCAGTCAGCTGTGACCCGCTGAATCCAGGACATCATGCATTCCAGTTTCATTTGCGAGAACATTTCCAGATCCCCTGGAGGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000666086.1 |
||
| CDS CCA 90 bp | CCAGGGAAAACACAATCTGCTCTGAGGGCCTTTGACAAACTGACATaGGCACTAGGACTAGGTCATGGATCATTGGCCCTTGATTCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: PGKTQSALRAFDKLT*ALGLGHGSLALDSV Trigger: GACAGAATCAAGGGCCAATGATCCATGACCTAGTCCTAGTGCCCATGTCAGTTTGTCAAAGGCCCTCAGAGCAGATTGTGTTTTCCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447430.1 |
||
| CDS TCA 90 bp | CCTCAGAATCATGGCAGGAGGCAAAAGGCACTTCTTACACGGCAGTaGCAAGAGAAAACTTTGATTTATGGGCTGGAAGGCACCACACCT | + |
|
Preference number: 5 (lower is better) Translates to: PQNHGRRQKALLTRQ*QEKTLIYGLEGTTP Trigger: AGGTGTGGTGCCTTCCAGCCCATAAATCAAAGTTTTCTCTTGTCACTGCCGTGTAAGAAGTGCCTTTTGCCTCCTGCCATGATTCTGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000653887.1 |
||
| CDS TCA 90 bp | GAAGTAGCTCAGCCATCTGAATTGGCACCTTTCTGCTTTTCTCGCTaGGTGACGGGTGCCTTGCAGTTGGCTTCAGATGTTTGTGAATGT | + |
|
Preference number: 5 (lower is better) Translates to: EVAQPSELAPFCFSR*VTGALQLASDVCEC Trigger: ACATTCACAAACATCTGAAGCCAACTGCAAGGCACCCGTCACTCAGCGAGAAAAGCAGAAAGGTGCCAATTCAGATGGCTGAGCTACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS GCA 90 bp | GGGCAGGGAGGTGATCTCATCATGGATGGCCACAGATCATCCACCTaGCAAACAGTTAACCCTGAACAAGTCATGTCAATTTATTTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: GQGGDLIMDGHRSST*QTVNPEQVMSIYFA Trigger: AGCAAAATAAATTGACATGACTTGTTCAGGGTTAACTGTTTGGCAGGTGGATGATCTGTGGCCATCCATGATGAGATCACCTCCCTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653887.1 ENST00000664231.1 ENST00000666086.1 |
||
| CDS GCA 90 bp | CACTCTGTGCTTGTTGAAGATGGTGTCTTCTTGATTTCACTTATTTaGCTGAAGCCACCCAATAAGTCAGTAGTGGGCCAGAGAATAGAA | + |
|
Preference number: 5 (lower is better) Translates to: HSVLVEDGVFLISLI*LKPPNKSVVGQRIE Trigger: TTCTATTCTCTGGCCCACTACTGACTTATTGGGTGGCTTCAGGCAAATAAGTGAAATCAAGAAGACACCATCTTCAACAAGCACAGAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000447430.1 ENST00000653887.1 ENST00000666086.1 |
||
| CDS CCA 72 bp | CATCACTGGCCTTCAACAGGTGTGGCGCTGAGCTTCTaGGCCTCAGAAGCCCTGACTTCTAGAGGCTGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: HHWPSTGVALSF*ASEALTSRGWG Trigger: CCCCCAGCCTCTAGAAGTCAGGGCTTCTGAGGCCCAGAAGCTCAGCGCCACACCTGTTGAAGGCCAGTGATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653887.1 ENST00000664231.1 ENST00000666086.1 |
||
| CDS CCA 72 bp | GCTGGGGGCCAGCGGGGCAGGGAGGTGATCTCATCATaGATGGCCACAGATCATCCACCTGCCAAACAGTTA | + |
|
Preference number: 6 (lower is better) Translates to: AGGQRGREVISS*MATDHPPAKQL Trigger: TAACTGTTTGGCAGGTGGATGATCTGTGGCCATCCATGATGAGATCACCTCCCTGCCCCGCTGGCCCCCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000653887.1 ENST00000664231.1 ENST00000666086.1 |
||
| CDS CCA 72 bp | ATGCTGGTTACTCACCAGCAACTGAGTGTTGGCAGGTaGAGAATGCTACCGCAGCCCGCCCAGACGGATCTG | + |
|
Preference number: 6 (lower is better) Translates to: MLVTHQQLSVGR*RMLPQPAQTDL Trigger: CAGATCCGTCTGGGCGGGCTGCGGTAGCATTCTCCACCTGCCAACACTCAGTTGCTGGTGAGTAACCAGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664231.1 |
||
| CDS CCA 72 bp | AGTCCGTATGCTGGTTACTCACCAGCAACTGAGTGTTaGCAGGTGGAGAATGCTACCGCAGCCCGCCCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: SPYAGYSPATEC*QVENATAARPD Trigger: GTCTGGGCGGGCTGCGGTAGCATTCTCCACCTGCCAACACTCAGTTGCTGGTGAGTAACCAGCATACGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664231.1 |
||
| CDS TCA 72 bp | TGTGACGGAGAAGGTTCCATTTCTGTGACCCTGTGGTaGTACAGGTCGGGACCCAGGCGAAGTAGCTCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CDGEGSISVTLW*YRSGPRRSSSA Trigger: GGCTGAGCTACTTCGCCTGGGTCCCGACCTGTATCACCACAGGGTCACAGAAATGGAACCTTCTCCGTCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS TCA 72 bp | CCATCAGGAGGTGTGACGGAGAAGGTTCCATTTCTGTaGCCCTGTGGTGATACAGGTCGGGACCCAGGCGAA | + |
|
Preference number: 6 (lower is better) Translates to: PSGGVTEKVPFL*PCGDTGRDPGE Trigger: TTCGCCTGGGTCCCGACCTGTATCACCACAGGGTCACAGAAATGGAACCTTCTCCGTCACACCTCCTGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS GCA 72 bp | AACTCAAACACGGCCTTAGGACTTCTCAGTGGCTGGTaGCCTTCCGTTGTGAGACCACTCTCTCTCCTGCCC | + |
|
Preference number: 6 (lower is better) Translates to: NSNTALGLLSGW*PSVVRPLSLLP Trigger: GGGCAGGAGAGAGAGTGGTCTCACAACGGAAGGGCACCAGCCACTGAGAAGTCCTAAGGCCGTGTTTGAGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000653887.1 |
||
| CDS CCA 72 bp | ACCCTGGGCAACACAGCAAGGCGTCATAGTTCCACATaGCTGGGGAAGCCTCAGAATCATGGCAGGAGGCAA | + |
|
Preference number: 6 (lower is better) Translates to: TLGNTARRHSST*LGKPQNHGRRQ Trigger: TTGCCTCCTGCCATGATTCTGAGGCTTCCCCAGCCATGTGGAACTATGACGCCTTGCTGTGTTGCCCAGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447430.1 |
||
| CDS CCA 72 bp | CCTGGGCAACACAGCAAGGCGTCATCTAGTTCCACATaGCTGGGGAAGCCTCAGAATCATGGCAGGAGGCAA | + |
|
Preference number: 6 (lower is better) Translates to: PGQHSKASSSST*LGKPQNHGRRQ Trigger: TTGCCTCCTGCCATGATTCTGAGGCTTCCCCAGCCATGTGGAACTAGATGACGCCTTGCTGTGTTGCCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653887.1 |
||
| CDS TCA 72 bp | ATTCAGCGGGTCACAGCTGACTGCCATCAGGAGGTGTaGCGGAGAAGGTTCCATTTCTGTGACCCTGTGGTG | + |
|
Preference number: 6 (lower is better) Translates to: IQRVTADCHQEV*RRRFHFCDPVV Trigger: CACCACAGGGTCACAGAAATGGAACCTTCTCCGTCACACCTCCTGATGGCAGTCAGCTGTGACCCGCTGAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS TCA 72 bp | TACAGGTCGGGACCCAGGCGAAGTAGCTCAGCCATCTaGATTGGCACCTTTCTGCTTTTCTCGCTGAGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: YRSGPRRSSSAI*IGTFLLFSLSD Trigger: GTCACTCAGCGAGAAAAGCAGAAAGGTGCCAATTCAGATGGCTGAGCTACTTCGCCTGGGTCCCGACCTGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS TCA 72 bp | ATGGGCACTAGGACTAGGTCATGGATCATTGGCCCTTaGTTCTGTCTCCCACTGAGCATCCCAAAGGGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: MGTRTRSWIIGP*FCLPLSIPKGL Trigger: CAACCCCTTTGGGATGCTCAGTGGGAGACAGAATCAAGGGCCAATGATCCATGACCTAGTCCTAGTGCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000447430.1 |
||
| CDS TCA 72 bp | CTCTCTCCTGCCTGTAGTTTCAGCTACTCTGGAGGCTaGGATGAAGTGAGACCCTGCCTAGGAAGTGAGAGT | + |
|
Preference number: 6 (lower is better) Translates to: LSPACSFSYSGG*DEVRPCLGSES Trigger: ACTCTCACTTCCTAGGCAGGGTCTCACTTCATCTCAGCCTCCAGAGTAGCTGAAACTACAGGCAGGAGAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000664231.1 |
||
| CDS TCA 72 bp | CAGCCATCTGAATTGGCACCTTTCTGCTTTTCTCGCTaGGTGACGGGTGCCTTGCAGTTGGCTTCAGATGTT | + |
|
Preference number: 6 (lower is better) Translates to: QPSELAPFCFSR*VTGALQLASDV Trigger: AACATCTGAAGCCAACTGCAAGGCACCCGTCACTCAGCGAGAAAAGCAGAAAGGTGCCAATTCAGATGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS CCA 72 bp | ATGTTCTCGCAAATGAAACTGGAATGCATGATGTCCTaGATTCAGCGGGTCACAGCTGACTGCCATCAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: MFSQMKLECMMS*IQRVTADCHQE Trigger: CTCCTGATGGCAGTCAGCTGTGACCCGCTGAATCCAGGACATCATGCATTCCAGTTTCATTTGCGAGAACAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000666086.1 |
||
| CDS TCA 72 bp | CATGGCAGGAGGCAAAAGGCACTTCTTACACGGCAGTaGCAAGAGAAAACTTTGATTTATGGGCTGGAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: HGRRQKALLTRQ*QEKTLIYGLEG Trigger: GCCTTCCAGCCCATAAATCAAAGTTTTCTCTTGTCACTGCCGTGTAAGAAGTGCCTTTTGCCTCCTGCCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000447430.1 ENST00000653887.1 |
||
| CDS TCA 72 bp | CACTGCTCACCTGCCAGGTGCCCACTCTGTGCTTGTTaGAGATGGTGTCTTCTTGATTTCACTTATTTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: HCSPARCPLCAC*RWCLLDFTYLP Trigger: AGGCAAATAAGTGAAATCAAGAAGACACCATCTTCAACAAGCACAGAGTGGGCACCTGGCAGGTGAGCAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000447430.1 |
||