Pregenerated sensors for LINC00508 (Homo sapiens)

Ensembl gene IDs: ENSG00000256971

Ensembl transcript IDs: ENST00000653038.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GGCCCCATGATGGCACGCGCTGAGCATACTCAAAGAAGTTCCACGTaGCTGAGGAGGTCTCACAATCATGGCAGAGGGCGAAAGTCACTT	+
Preference number: 5 (lower is better) Translates to: GPMMARAEHTQRSST*LRRSHNHGRGRKSL Trigger: AAGTGACTTTCGCCCTCTGCCATGATTGTGAGACCTCCTCAGCCACGTGGAACTTCTTTGAGTATGCTCAGCGCGTGCCATCATGGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653038.1
CDS CCA 90 bp	GTGAACTCACAGGATCAACAGTCAGAAGGTGACAGATGGAAGATGTaGCTTCCTGAGTTCTCCTGTAGGGCTGCACTTCATAAAGTCATA	+
Preference number: 5 (lower is better) Translates to: VNSQDQQSEGDRWKM*LPEFSCRAALHKVI Trigger: TATGACTTTATGAAGTGCAGCCCTACAGGAGAACTCAGGAAGCCACATCTTCCATCTGTCACCTTCTGACTGTTGATCCTGTGAGTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653038.1
CDS CCA 90 bp	GGAAGGCTGCTAACATTGAGACGTTTTAGCGTCTATTCTGAACTGTaGTTCTCAGAATTCAGGACCAAAGTTGGGCTCTGTGTGTCAAGT	+
Preference number: 5 (lower is better) Translates to: GRLLTLRRFSVYSEL*FSEFRTKVGLCVSS Trigger: ACTTGACACACAGAGCCCAACTTTGGTCCTGAATTCTGAGAACCACAGTTCAGAATAGACGCTAAAACGTCTCAATGTTAGCAGCCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653038.1
CDS CCA 72 bp	ATGGCACGCGCTGAGCATACTCAAAGAAGTTCCACGTaGCTGAGGAGGTCTCACAATCATGGCAGAGGGCGA	+
Preference number: 6 (lower is better) Translates to: MARAEHTQRSST*LRRSHNHGRGR Trigger: TCGCCCTCTGCCATGATTGTGAGACCTCCTCAGCCACGTGGAACTTCTTTGAGTATGCTCAGCGCGTGCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653038.1
CDS TCA 72 bp	CACGCGCTGAGCATACTCAAAGAAGTTCCACGTGGCTaGGGAGGTCTCACAATCATGGCAGAGGGCGAAAGT	+
Preference number: 6 (lower is better) Translates to: HALSILKEVPRG*GGLTIMAEGES Trigger: ACTTTCGCCCTCTGCCATGATTGTGAGACCTCCTCAGCCACGTGGAACTTCTTTGAGTATGCTCAGCGCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653038.1
CDS CCA 72 bp	CAGGATCAACAGTCAGAAGGTGACAGATGGAAGATGTaGCTTCCTGAGTTCTCCTGTAGGGCTGCACTTCAT	+
Preference number: 6 (lower is better) Translates to: QDQQSEGDRWKM*LPEFSCRAALH Trigger: ATGAAGTGCAGCCCTACAGGAGAACTCAGGAAGCCACATCTTCCATCTGTCACCTTCTGACTGTTGATCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000653038.1
CDS CCA 72 bp	CTAACATTGAGACGTTTTAGCGTCTATTCTGAACTGTaGTTCTCAGAATTCAGGACCAAAGTTGGGCTCTGT	+
Preference number: 6 (lower is better) Translates to: LTLRRFSVYSEL*FSEFRTKVGLC Trigger: ACAGAGCCCAACTTTGGTCCTGAATTCTGAGAACCACAGTTCAGAATAGACGCTAAAACGTCTCAATGTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653038.1
CDS CAA 72 bp	ATTCTGAACTGTGGTTCTCAGAATTCAGGACCAAAGTaGGGCTCTGTGTGTCAAGTTATCTGCATAGAAAAG	+
Preference number: 6 (lower is better) Translates to: ILNCGSQNSGPK*GSVCQVICIEK Trigger: CTTTTCTATGCAGATAACTTGACACACAGAGCCCAACTTTGGTCCTGAATTCTGAGAACCACAGTTCAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000653038.1

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