Pregenerated sensors for LINC00501 (Homo sapiens)
Ensembl gene IDs: ENSG00000203645Ensembl transcript IDs: ENST00000425388.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ACTATCCCTTATTCAGTTCATCCGCAGGAGAGGAGATGTTTCCATTaGACTTGGGAGAACAGGGACTTGGGTTTCATGTCTGCAGATGGG | + |
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Preference number: 5 (lower is better) Translates to: TIPYSVHPQERRCFH*TWENRDLGFMSADG Trigger: CCCATCTGCAGACATGAAACCCAAGTCCCTGTTCTCCCAAGTGCAATGGAAACATCTCCTCTCCTGCGGATGAACTGAATAAGGGATAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CAA 90 bp | CCCTTATTCAGTTCATCCGCAGGAGAGGAGATGTTTCCATTGCACTaGGGAGAACAGGGACTTGGGTTTCATGTCTGCAGATGGGCTACA | + |
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Preference number: 6 (lower is better) Translates to: PLFSSSAGEEMFPLH*GEQGLGFHVCRWAT Trigger: TGTAGCCCATCTGCAGACATGAAACCCAAGTCCCTGTTCTCCCAAGTGCAATGGAAACATCTCCTCTCCTGCGGATGAACTGAATAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CCA 72 bp | GGAGATGTTTCCATTGCACTTGGGAGAACAGGGACTTaGGTTTCATGTCTGCAGATGGGCTACAGGCACATA | + |
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Preference number: 6 (lower is better) Translates to: GDVSIALGRTGT*VSCLQMGYRHI Trigger: TATGTGCCTGTAGCCCATCTGCAGACATGAAACCCAAGTCCCTGTTCTCCCAAGTGCAATGGAAACATCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CAA 72 bp | AGGAGATGTTTCCATTGCACTTGGGAGAACAGGGACTaGGGTTTCATGTCTGCAGATGGGCTACAGGCACAT | + |
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Preference number: 6 (lower is better) Translates to: RRCFHCTWENRD*GFMSADGLQAH Trigger: ATGTGCCTGTAGCCCATCTGCAGACATGAAACCCAAGTCCCTGTTCTCCCAAGTGCAATGGAAACATCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CAA 90 bp | CACTATCCCTTATTCAGTTCATCCGCAGGAGAGGAGATGTTTCCATaGCACTTGGGAGAACAGGGACTTGGGTTTCATGTCTGCAGATGG | + |
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Preference number: 6 (lower is better) Translates to: HYPLFSSSAGEEMFP*HLGEQGLGFHVCRW Trigger: CCATCTGCAGACATGAAACCCAAGTCCCTGTTCTCCCAAGTGCAATGGAAACATCTCCTCTCCTGCGGATGAACTGAATAAGGGATAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CCA 72 bp | TTGGGAGAACAGGGACTTGGGTTTCATGTCTGCAGATaGGCTACAGGCACATACAAGATAATGTGCTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: LGEQGLGFHVCR*ATGTYKIMCSC Trigger: GCAAGAGCACATTATCTTGTATGTGCCTGTAGCCCATCTGCAGACATGAAACCCAAGTCCCTGTTCTCCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CAA 72 bp | CCTTTGTGCTTCCGCGTTCACATCTGTTGTAGTTATTaGCTTGGACTCTATCTCTTTGCTGGAGGGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: PLCFRVHICCSY*LGLYLFAGGQE Trigger: TTCCTGCCCTCCAGCAAAGAGATAGAGTCCAAGCAAATAACTACAACAGATGTGAACGCGGAAGCACAAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CAA 72 bp | TTATTCAGTTCATCCGCAGGAGAGGAGATGTTTCCATaGCACTTGGGAGAACAGGGACTTGGGTTTCATGTC | + |
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Preference number: 6 (lower is better) Translates to: LFSSSAGEEMFP*HLGEQGLGFHV Trigger: GACATGAAACCCAAGTCCCTGTTCTCCCAAGTGCAATGGAAACATCTCCTCTCCTGCGGATGAACTGAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CAA 72 bp | TGTGCTTCCGCGTTCACATCTGTTGTAGTTATTTGCTaGGACTCTATCTCTTTGCTGGAGGGCAGGAAACAT | + |
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Preference number: 6 (lower is better) Translates to: CASAFTSVVVIC*DSISLLEGRKH Trigger: ATGTTTCCTGCCCTCCAGCAAAGAGATAGAGTCCAAGCAAATAACTACAACAGATGTGAACGCGGAAGCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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| CDS CAA 90 bp | TTCTTCCTTTGTGCTTCCGCGTTCACATCTGTTGTAGTTATTTGCTaGGACTCTATCTCTTTGCTGGAGGGCAGGAAACATGTCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: FFLCASAFTSVVVIC*DSISLLEGRKHVFF Trigger: GAAGAAGACATGTTTCCTGCCCTCCAGCAAAGAGATAGAGTCCAAGCAAATAACTACAACAGATGTGAACGCGGAAGCACAAAGGAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000425388.1 |
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