Pregenerated sensors for LINC00500 (Homo sapiens)
Ensembl gene IDs: ENSG00000249381Ensembl transcript IDs: ENST00000515860.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | ATTTCACTCCTTGCAATCAGTTCCAGAAGAGGCACAATCACAAGGTaGAGTCCCACAATAGGTCGTCTGCAAGCTGAGAAGCAAGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: ISLLAISSRRGTITR*SPTIGRLQAEKQES Trigger: GCTTTCTTGCTTCTCAGCTTGCAGACGACCTATTGTGGGACTTCACCTTGTGATTGTGCCTCTTCTGGAACTGATTGCAAGGAGTGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS GCA 90 bp | TCCATAGTAGAGTTGCTTATTCTAAAATTAGTCCATTTCACTCCTTaGAATCAGTTCCAGAAGAGGCACAATCACAAGGTGAAGTCCCAC | + |
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Preference number: 5 (lower is better) Translates to: SIVELLILKLVHFTP*NQFQKRHNHKVKSH Trigger: GTGGGACTTCACCTTGTGATTGTGCCTCTTCTGGAACTGATTGCAAGGAGTGAAATGGACTAATTTTAGAATAAGCAACTCTACTATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS CCA 90 bp | GTCCCTTGTGGATATATATGTCATTTCATTTGTCCAGTCTGTTCTTaGAGCAAAACCTTATATGTGTCTACTGTTTTCTGCGGAAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: VPCGYICHFICPVCS*SKTLYVSTVFCGSQ Trigger: CTGGCTTCCGCAGAAAACAGTAGACACATATAAGGTTTTGCTCCAAGAACAGACTGGACAAATGAAATGACATATATATCCACAAGGGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS CCA 90 bp | TCTCCTCTTTCTCCTCTGACAACTGCCTTAAAAACATGTCCCTTGTaGATATATATGTCATTTCATTTGTCCAGTCTGTTCTTGGAGCAA | + |
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Preference number: 5 (lower is better) Translates to: SPLSPLTTALKTCPL*IYMSFHLSSLFLEQ Trigger: TTGCTCCAAGAACAGACTGGACAAATGAAATGACATATATATCCACAAGGGACATGTTTTTAAGGCAGTTGTCAGAGGAGAAAGAGGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS TCA 72 bp | CACAAGGTGAAGTCCCACAATAGGTCGTCTGCAAGCTaGGAAGCAAGAAAGCCAGTCCAAGTCCCAGAACCT | + |
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Preference number: 6 (lower is better) Translates to: HKVKSHNRSSAS*EARKPVQVPEP Trigger: AGGTTCTGGGACTTGGACTGGCTTTCTTGCTTCTCAGCTTGCAGACGACCTATTGTGGGACTTCACCTTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS TCA 72 bp | CTTGCAATCAGTTCCAGAAGAGGCACAATCACAAGGTaGAGTCCCACAATAGGTCGTCTGCAAGCTGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: LAISSRRGTITR*SPTIGRLQAEK Trigger: CTTCTCAGCTTGCAGACGACCTATTGTGGGACTTCACCTTGTGATTGTGCCTCTTCTGGAACTGATTGCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS CAA 90 bp | TTCCATAGTAGAGTTGCTTATTCTAAAATTAGTCCATTTCACTCCTaGCAATCAGTTCCAGAAGAGGCACAATCACAAGGTGAAGTCCCA | + |
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Preference number: 6 (lower is better) Translates to: FHSRVAYSKISPFHS*QSVPEEAQSQGEVP Trigger: TGGGACTTCACCTTGTGATTGTGCCTCTTCTGGAACTGATTGCAAGGAGTGAAATGGACTAATTTTAGAATAAGCAACTCTACTATGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS CAA 90 bp | TGTCCCTTGTGGATATATATGTCATTTCATTTGTCCAGTCTGTTCTaGGAGCAAAACCTTATATGTGTCTACTGTTTTCTGCGGAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: CPLWIYMSFHLSSLF*EQNLICVYCFLRKP Trigger: TGGCTTCCGCAGAAAACAGTAGACACATATAAGGTTTTGCTCCAAGAACAGACTGGACAAATGAAATGACATATATATCCACAAGGGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS CAA 90 bp | ACTGCCTTAAAAACATGTCCCTTGTGGATATATATGTCATTTCATTaGTCCAGTCTGTTCTTGGAGCAAAACCTTATATGTGTCTACTGT | + |
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Preference number: 6 (lower is better) Translates to: TALKTCPLWIYMSFH*SSLFLEQNLICVYC Trigger: ACAGTAGACACATATAAGGTTTTGCTCCAAGAACAGACTGGACAAATGAAATGACATATATATCCACAAGGGACATGTTTTTAAGGCAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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| CDS CAA 72 bp | TGGATATATATGTCATTTCATTTGTCCAGTCTGTTCTaGGAGCAAAACCTTATATGTGTCTACTGTTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: WIYMSFHLSSLF*EQNLICVYCFL Trigger: CAGAAAACAGTAGACACATATAAGGTTTTGCTCCAAGAACAGACTGGACAAATGAAATGACATATATATCCA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000515860.1 |
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