Pregenerated sensors for LINC00498 (Homo sapiens)
Ensembl gene IDs: ENSG00000248397Ensembl transcript IDs: ENST00000504369.1
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTCTGGAATTCCTTCTCCTCTTGTTGTGGAGCAGGTTTATTGTGTaGGGGTCACCAACTTGTCTGAGTCCAGTGAGAGAAAACACCTGT | + |
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Preference number: 5 (lower is better) Translates to: ALEFLLLLLWSRFIV*GSPTCLSPVRENTC Trigger: ACAGGTGTTTTCTCTCACTGGACTCAGACAAGTTGGTGACCCGCACACAATAAACCTGCTCCACAACAAGAGGAGAAGGAATTCCAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000504369.1 |
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| CDS GCA 72 bp | TTCCTTCTCCTCTTGTTGTGGAGCAGGTTTATTGTGTaGGGGTCACCAACTTGTCTGAGTCCAGTGAGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: FLLLLLWSRFIV*GSPTCLSPVRE Trigger: TTCTCTCACTGGACTCAGACAAGTTGGTGACCCGCACACAATAAACCTGCTCCACAACAAGAGGAGAAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504369.1 |
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| CDS CAA 72 bp | GTTGTGGAGCAGGTTTATTGTGTGCGGGTCACCAACTaGTCTGAGTCCAGTGAGAGAAAACACCTGTGCATA | + |
|
Preference number: 6 (lower is better) Translates to: VVEQVYCVRVTN*SESSERKHLCI Trigger: TATGCACAGGTGTTTTCTCTCACTGGACTCAGACAAGTTGGTGACCCGCACACAATAAACCTGCTCCACAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504369.1 |
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| CDS CAA 90 bp | TCTCCTCTTGTTGTGGAGCAGGTTTATTGTGTGCGGGTCACCAACTaGTCTGAGTCCAGTGAGAGAAAACACCTGTGCATACAACAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: SPLVVEQVYCVRVTN*SESSERKHLCIQQA Trigger: AGCTTGTTGTATGCACAGGTGTTTTCTCTCACTGGACTCAGACAAGTTGGTGACCCGCACACAATAAACCTGCTCCACAACAAGAGGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504369.1 |
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| CDS TCA 72 bp | CTTTCTTTCAAAGCTTCTATCATTGCATTTTCCTCCTaGAGCCATTGTTCTTACTCTGTTCCTTTCTCCATT | + |
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Preference number: 6 (lower is better) Translates to: LSFKASIIAFSS*SHCSYSVPFSI Trigger: AATGGAGAAAGGAACAGAGTAAGAACAATGGCTTCAGGAGGAAAATGCAATGATAGAAGCTTTGAAAGAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000504369.1 |
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