Pregenerated sensors for LINC00494 (Homo sapiens)
Ensembl gene IDs: ENSG00000235621Ensembl transcript IDs: ENST00000416742.5, ENST00000425021.2, ENST00000433094.1, ENST00000545181.5, ENST00000652930.1, ENST00000655482.1, ENST00000660785.1, ENST00000663665.1, ENST00000666125.1, ENST00000667132.1, ENST00000669055.1, ENST00000669689.1, ENST00000670744.1, ENST00000670842.1, ENST00000671184.1
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGACGCCACCGTGCCTCAGCTGTTCGGTGTTCTCATGATCCCTGGTaGGTGTCGGCTCATCCAAGCAGGTGCTCACTCATCCATTCTCTC | + |
|
Preference number: 5 (lower is better) Translates to: RRHRASAVRCSHDPW*VSAHPSRCSLIHSL Trigger: GAGAGAATGGATGAGTGAGCACCTGCTTGGATGAGCCGACACCCACCAGGGATCATGAGAACACCGAACAGCTGAGGCACGGTGGCGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS CCA 90 bp | GAGAGACGCCACCGTGCCTCAGCTGTTCGGTGTTCTCATGATCCCTaGTGGGTGTCGGCTCATCCAAGCAGGTGCTCACTCATCCATTCT | + |
|
Preference number: 5 (lower is better) Translates to: ERRHRASAVRCSHDP*WVSAHPSRCSLIHS Trigger: AGAATGGATGAGTGAGCACCTGCTTGGATGAGCCGACACCCACCAGGGATCATGAGAACACCGAACAGCTGAGGCACGGTGGCGTCTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS CCA 90 bp | CACTTGCTGCTCACCTGCCACGTCTTCCAGGTAAAGGCGTCTGAATaGGGCCATTCACGGGTTGACTGCTCCTCTCCCACCTTTTCCGTT | + |
|
Preference number: 5 (lower is better) Translates to: HLLLTCHVFQVKASE*GHSRVDCSSPTFSV Trigger: AACGGAAAAGGTGGGAGAGGAGCAGTCAACCCGTGAATGGCCCCATTCAGACGCCTTTACCTGGAAGACGTGGCAGGTGAGCAGCAAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000669055.1 ENST00000669689.1 |
||
| CDS TCA 90 bp | CCTAGGGCTGCCCACTGGCCTGTGTGTTATCCTTCGAGAATCATCTaGGGAGTGATGAGGCCTATCGAGTCTGGAGGACAAGCAGTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: PRAAHWPVCYPSRII*GVMRPIESGGQAVA Trigger: GGCTACTGCTTGTCCTCCAGACTCGATAGGCCTCATCACTCCTCAGATGATTCTCGAAGGATAACACACAGGCCAGTGGGCAGCCCTAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000416742.5 ENST00000660785.1 ENST00000666125.1 ENST00000669055.1 ENST00000670744.1 ENST00000670842.1 |
||
| CDS CCA 90 bp | ACTGTGGCTCTGTCAGAGCATCTCACCCTGGCTCTACGGACAGTCTaGGCAGGATACAACTGTGTGAGGACTTTCCTGTGTATCCTATGG | + |
|
Preference number: 5 (lower is better) Translates to: TVALSEHLTLALRTV*AGYNCVRTFLCILW Trigger: CCATAGGATACACAGGAAAGTCCTCACACAGTTGTATCCTGCCCAGACTGTCCGTAGAGCCAGGGTGAGATGCTCTGACAGAGCCACAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 ENST00000660785.1 |
||
| CDS TCA 90 bp | ACTGCTCTCCCCTGCCCTGGGTTTGACTTAAGCAACACCTTTGCTTaGCCAAGCATGAAGGTTGGAGTCTGGAGGACAAGCAGTAGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: TALPCPGFDLSNTFA*PSMKVGVWRTSSSH Trigger: ATGGCTACTGCTTGTCCTCCAGACTCCAACCTTCATGCTTGGTCAAGCAAAGGTGTTGCTTAAGTCAAACCCAGGGCAGGGGAGAGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000671184.1 |
||
| CDS GCA 90 bp | CCAGTCTTTCCCGGCTGTTTGAAGAGATTCCTAGGGAGGAGGTCATaGCAGTCACATTTCTTTTGGAAGTACATCCCTCAGGCAGATAAG | + |
|
Preference number: 5 (lower is better) Translates to: PVFPGCLKRFLGRRS*QSHFFWKYIPQADK Trigger: CTTATCTGCCTGAGGGATGTACTTCCAAAAGAAATGTGACTGGCATGACCTCCTCCCTAGGAATCTCTTCAAACAGCCGGGAAAGACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS TCA 90 bp | ACTGCTCTCCCCTGCCCTGGGTTTGACTTAAGCAACACCTTTGCTTaGCCAAGCATGAAGGTTGCTGAGACAGAAAGAAAGTCTTCATGT | + |
|
Preference number: 5 (lower is better) Translates to: TALPCPGFDLSNTFA*PSMKVAETERKSSC Trigger: ACATGAAGACTTTCTTTCTGTCTCAGCAACCTTCATGCTTGGTCAAGCAAAGGTGTTGCTTAAGTCAAACCCAGGGCAGGGGAGAGCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 11 transcripts: ENST00000416742.5 ENST00000545181.5 ENST00000652930.1 ENST00000660785.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000669055.1 ENST00000669689.1 ENST00000670744.1 ENST00000670842.1 |
||
| CDS TCA 90 bp | GAAGTGAAGGAGAGACAGGAGAAGGTCAGAGAGACATGTGAGTTCTaGGGCCCTCTTCTGAGGTCTTTCAATATCCTTTGTTCAAAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: EVKERQEKVRETCEF*GPLLRSFNILCSKH Trigger: GTGCTTTGAACAAAGGATATTGAAAGACCTCAGAAGAGGGCCTCAGAACTCACATGTCTCTCTGACCTTCTCCTGTCTCTCCTTCACTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS TCA 90 bp | TGCTTTGGAAGTGAAGGAGAGACAGGAGAAGGTCAGAGAGACATGTaGGTTCTGAGGCCCTCTTCTGAGGTCTTTCAATATCCTTTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: CFGSEGETGEGQRDM*VLRPSSEVFQYPLF Trigger: GAACAAAGGATATTGAAAGACCTCAGAAGAGGGCCTCAGAACTCACATGTCTCTCTGACCTTCTCCTGTCTCTCCTTCACTTCCAAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS TCA 90 bp | CTTTTGCAGAGCAACGTCACTGTGTATTTGTGGTGGATGTGGAGGTaGGATGAAAATGAACAGACGGTTACAACCATTCCAAGCCACCTC | + |
|
Preference number: 5 (lower is better) Translates to: LLQSNVTVYLWWMWR*DENEQTVTTIPSHL Trigger: GAGGTGGCTTGGAATGGTTGTAACCGTCTGTTCATTTTCATCTCACCTCCACATCCACCACAAATACACAGTGACGTTGCTCTGCAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS CCA 90 bp | GTCTGGGCAGGATACAACTGTGTGAGGACTTTCCTGTGTATCCTATaGGTACCTCCTTTCCTAGTTGTGACAATTGCAAACATATCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: VWAGYNCVRTFLCIL*VPPFLVVTIANISR Trigger: TCTGGATATGTTTGCAATTGTCACAACTAGGAAAGGAGGTACCCATAGGATACACAGGAAAGTCCTCACACAGTTGTATCCTGCCCAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 ENST00000660785.1 |
||
| CDS CCA 90 bp | ATTCCCAGAATTTTGCGGGTTAACAGTGATGCTACTCATTATTATTaGCTTCTGTCCCTCCTACCTGGCCTTGCTCTAAGCACTTTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: IPRILRVNSDATHYY*LLSLLPGLALSTFL Trigger: CAGAAAAGTGCTTAGAGCAAGGCCAGGTAGGAGGGACAGAAGCCAATAATAATGAGTAGCATCACTGTTAACCCGCAAAATTCTGGGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CCA 90 bp | GTAAACAAAAGTTGCCTTGTTATTCAGATAAAGTCTCTAGAAGAATaGACAACAGCCTTTCTGAGTGCAGTGAGGACTTCCAATCTCCTC | + |
|
Preference number: 5 (lower is better) Translates to: VNKSCLVIQIKSLEE*TTAFLSAVRTSNLL Trigger: GAGGAGATTGGAAGTCCTCACTGCACTCAGAAAGGCTGTTGTCCATTCTTCTAGAGACTTTATCTGAATAACAAGGCAACTTTTGTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CAA 72 bp | CACAGCAGGTGCACAGGCCCCGGGGTAGGAGAGACCTaGGTGATCCTGGGTGAGGAACAGCAGGGAGGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: HSRCTGPGVGET*VILGEEQQGGG Trigger: CCCACCTCCCTGCTGTTCCTCACCCAGGATCACCAAGGTCTCTCCTACCCCGGGGCCTGTGCACCTGCTGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000663665.1 ENST00000666125.1 ENST00000669055.1 ENST00000669689.1 ENST00000670744.1 ENST00000670842.1 |
||
| CDS GCA 72 bp | ACCTCTGACGGCTTCCCCAGGGGGCTCTGGCTGGGCTaGTCAGCTGTGTTGTCTCACAGCATATGCTTCACA | + |
|
Preference number: 6 (lower is better) Translates to: TSDGFPRGLWLG*SAVLSHSICFT Trigger: TGTGAAGCATATGCTGTGAGACAACACAGCTGAGCAGCCCAGCCAGAGCCCCCTGGGGAAGCCGTCAGAGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000433094.1 ENST00000669055.1 |
||
| CDS GCA 72 bp | TCTCTCTCCCACTCTCCCGCTCACTTGCTGCTCACCTaGCACGTCTTCCAGGTAAAGGCGTCTGAATGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: SLSHSPAHLLLT*HVFQVKASEWG Trigger: GCCCCATTCAGACGCCTTTACCTGGAAGACGTGGCAGGTGAGCAGCAAGTGAGCGGGAGAGTGGGAGAGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000669055.1 ENST00000669689.1 |
||
| CDS CCA 72 bp | CTCACCTGCCACGTCTTCCAGGTAAAGGCGTCTGAATaGGGCCATTCACGGGTTGACTGCTCCTCTCCCACC | + |
|
Preference number: 6 (lower is better) Translates to: LTCHVFQVKASE*GHSRVDCSSPT Trigger: GGTGGGAGAGGAGCAGTCAACCCGTGAATGGCCCCATTCAGACGCCTTTACCTGGAAGACGTGGCAGGTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000669055.1 ENST00000669689.1 |
||
| CDS CCA 72 bp | CACCGTGCCTCAGCTGTTCGGTGTTCTCATGATCCCTaGTGGGTGTCGGCTCATCCAAGCAGGTGCTCACTC | + |
|
Preference number: 6 (lower is better) Translates to: HRASAVRCSHDP*WVSAHPSRCSL Trigger: GAGTGAGCACCTGCTTGGATGAGCCGACACCCACCAGGGATCATGAGAACACCGAACAGCTGAGGCACGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS CAA 90 bp | AGATGGGAGAACCTTGGTTCAGCAGACCTGGACCCAGCTCTCAGCTaGCAGCCAAGAAAAGCCAGGCCTGGCTCAGATGGGATGAACCCC | + |
|
Preference number: 6 (lower is better) Translates to: RWENLGSADLDPALS*QPRKARPGSDGMNP Trigger: GGGGTTCATCCCATCTGAGCCAGGCCTGGCTTTTCTTGGCTGCAAGCTGAGAGCTGGGTCCAGGTCTGCTGAACCAAGGTTCTCCCATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 12 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000652930.1 ENST00000655482.1 ENST00000660785.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CCA 72 bp | TGTTCCTGCCACGTCTTCCAGGTAAAGGCGTCTGAATaGGGCCATTCACGGGTTGACTGCTCCTCTCCCACC | + |
|
Preference number: 6 (lower is better) Translates to: CSCHVFQVKASE*GHSRVDCSSPT Trigger: GGTGGGAGAGGAGCAGTCAACCCGTGAATGGCCCCATTCAGACGCCTTTACCTGGAAGACGTGGCAGGAACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000670744.1 ENST00000670842.1 |
||
| CDS CCA 72 bp | CGTGCCTCAGCTGTTCGGTGTTCTCATGATCCCTGGTaGGTGTCGGCTCATCCAAGCAGGTGCTCACTCATC | + |
|
Preference number: 6 (lower is better) Translates to: RASAVRCSHDPW*VSAHPSRCSLI Trigger: GATGAGTGAGCACCTGCTTGGATGAGCCGACACCCACCAGGGATCATGAGAACACCGAACAGCTGAGGCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS CAA 72 bp | GATGCCCCAGGGCAGGGACCCTGTCTCCTTTCGGTCTaGGTGGCGCCAGGAACACATCAGGGCTCAATAAAT | + |
|
Preference number: 6 (lower is better) Translates to: DAPGQGPCLLSV*VAPGTHQGSIN Trigger: ATTTATTGAGCCCTGATGTGTTCCTGGCGCCACCAAGACCGAAAGGAGACAGGGTCCCTGCCCTGGGGCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000425021.2 ENST00000663665.1 ENST00000669689.1 |
||
| CDS TCA 72 bp | GGAGGACAAGCAGTAGCCATTGAACCTGCAACTGCATaGTGTGCGGGAGGTGGGGGCTGTTCTAAAGGACGA | + |
|
Preference number: 6 (lower is better) Translates to: GGQAVAIEPATA*CAGGGGCSKGR Trigger: TCGTCCTTTAGAACAGCCCCCACCTCCCGCACATCATGCAGTTGCAGGTTCAATGGCTACTGCTTGTCCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 11 transcripts: ENST00000416742.5 ENST00000425021.2 ENST00000660785.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000669055.1 ENST00000669689.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS TCA 72 bp | GCCCACTGGCCTGTGTGTTATCCTTCGAGAATCATCTaGGGAGTGATGAGGCGAGTCTGGAGGACAAGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: AHWPVCYPSRII*GVMRRVWRTSS Trigger: ACTGCTTGTCCTCCAGACTCGCCTCATCACTCCTCAGATGATTCTCGAAGGATAACACACAGGCCAGTGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000667132.1 |
||
| CDS CCA 72 bp | CTGTCAGAGCATCTCACCCTGGCTCTACGGACAGTCTaGGCAGGATACAACTGTGTGAGGACTTTCCTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: LSEHLTLALRTV*AGYNCVRTFLC Trigger: ACACAGGAAAGTCCTCACACAGTTGTATCCTGCCCAGACTGTCCGTAGAGCCAGGGTGAGATGCTCTGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 ENST00000660785.1 |
||
| CDS CCA 72 bp | CAATGTTCACTGTGGCTCTGTCAGAGCATCTCACCCTaGCTCTACGGACAGTCTGGGCAGGATACAACTGTG | + |
|
Preference number: 6 (lower is better) Translates to: QCSLWLCQSISP*LYGQSGQDTTV Trigger: CACAGTTGTATCCTGCCCAGACTGTCCGTAGAGCCAGGGTGAGATGCTCTGACAGAGCCACAGTGAACATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 ENST00000660785.1 |
||
| CDS TCA 72 bp | GCCCACTGGCCTGTGTGTTATCCTTCGAGAATCATCTaGGGAGTGATGAGGCCTATCGAGTCTGGAGGACAA | + |
|
Preference number: 6 (lower is better) Translates to: AHWPVCYPSRII*GVMRPIESGGQ Trigger: TTGTCCTCCAGACTCGATAGGCCTCATCACTCCTCAGATGATTCTCGAAGGATAACACACAGGCCAGTGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000416742.5 ENST00000660785.1 ENST00000666125.1 ENST00000669055.1 ENST00000670744.1 ENST00000670842.1 |
||
| CDS TCA 72 bp | TGGCTCTACGGACAGTCTGGGCAGGATACAACTGTGTaGGGACTTTCCTGTGTATCCTATGGGTACCTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: WLYGQSGQDTTV*GLSCVSYGYLL Trigger: AAGGAGGTACCCATAGGATACACAGGAAAGTCCTCACACAGTTGTATCCTGCCCAGACTGTCCGTAGAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 ENST00000660785.1 |
||
| CDS TCA 72 bp | TCTGAGTGCAGTGAGGACTTCCAATCTCCTCTCAGGTaGCCAGTCTTTCCCGGCTGTTTGAAGAGATTCCTA | + |
|
Preference number: 6 (lower is better) Translates to: SECSEDFQSPLR*PVFPGCLKRFL Trigger: TAGGAATCTCTTCAAACAGCCGGGAAAGACTGGTCACCTGAGAGGAGATTGGAAGTCCTCACTGCACTCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS TCA 72 bp | GCCCACTGGCCTGTGTGTTATCCTTCGAGAATCATCTaGGGAGTGATGAGGCCTATCCATCTGGGACATTTT | + |
|
Preference number: 6 (lower is better) Translates to: AHWPVCYPSRII*GVMRPIHLGHF Trigger: AAAATGTCCCAGATGGATAGGCCTCATCACTCCTCAGATGATTCTCGAAGGATAACACACAGGCCAGTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663665.1 |
||
| CDS GCA 72 bp | CCCGGCTGTTTGAAGAGATTCCTAGGGAGGAGGTCATaGCAGTCACATTTCTTTTGGAAGTACATCCCTCAG | + |
|
Preference number: 6 (lower is better) Translates to: PGCLKRFLGRRS*QSHFFWKYIPQ Trigger: CTGAGGGATGTACTTCCAAAAGAAATGTGACTGGCATGACCTCCTCCCTAGGAATCTCTTCAAACAGCCGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CCA 72 bp | TCCAAGCCACCTCTTGACATCACCAGTGATAATAAATaGTCATCAGCTCTCATGTCAGGACCCAGGGGCACA | + |
|
Preference number: 6 (lower is better) Translates to: SKPPLDITSDNK*SSALMSGPRGT Trigger: TGTGCCCCTGGGTCCTGACATGAGAGCTGATGACCATTTATTATCACTGGTGATGTCAAGAGGTGGCTTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS TCA 72 bp | CCCTGCCCTGGGTTTGACTTAAGCAACACCTTTGCTTaGCCAAGCATGAAGGTTGCTGAGACAGAAAGAAAG | + |
|
Preference number: 6 (lower is better) Translates to: PCPGFDLSNTFA*PSMKVAETERK Trigger: CTTTCTTTCTGTCTCAGCAACCTTCATGCTTGGTCAAGCAAAGGTGTTGCTTAAGTCAAACCCAGGGCAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000416742.5 ENST00000545181.5 ENST00000652930.1 ENST00000660785.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000669055.1 ENST00000669689.1 ENST00000670744.1 ENST00000670842.1 |
||
| CDS CCA 72 bp | ATTCGATGCGACGTCATTGCCCCTGTGTTAAGGGTATaGAAACTAAGCTGGGAGAGCAGAAATTGCTTGCTC | + |
|
Preference number: 6 (lower is better) Translates to: IRCDVIAPVLRV*KLSWESRNCLL Trigger: GAGCAAGCAATTTCTGCTCTCCCAGCTTAGTTTCCATACCCTTAACACAGGGGCAATGACGTCGCATCGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENST00000416742.5 ENST00000545181.5 ENST00000655482.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CCA 72 bp | TTCCTAGGGAGGAGGTCATGCCAGTCACATTTCTTTTaGAAGTACATCCCTCAGGCAGATAAGGGAATCCCA | + |
|
Preference number: 6 (lower is better) Translates to: FLGRRSCQSHFF*KYIPQADKGIP Trigger: TGGGATTCCCTTATCTGCCTGAGGGATGTACTTCCAAAAGAAATGTGACTGGCATGACCTCCTCCCTAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CCA 72 bp | TGCTACTCATTATTATTGGCTTCTGTCCCTCCTACCTaGCCTTGCTCTAAGCACTTTTCTGGCGTTCAGTTG | + |
|
Preference number: 6 (lower is better) Translates to: CYSLLLASVPPT*PCSKHFSGVQL Trigger: CAACTGAACGCCAGAAAAGTGCTTAGAGCAAGGCCAGGTAGGAGGGACAGAAGCCAATAATAATGAGTAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS TCA 72 bp | AGGTCAGAGAGACATGTGAGTTCTGAGGCCCTCTTCTaGGGTCTTTCAATATCCTTTGTTCAAAGCACTCAG | + |
|
Preference number: 6 (lower is better) Translates to: RSERHVSSEALF*GLSISFVQSTQ Trigger: CTGAGTGCTTTGAACAAAGGATATTGAAAGACCTCAGAAGAGGGCCTCAGAACTCACATGTCTCTCTGACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CAA 90 bp | CCTCCTACCTGGCCTTGCTCTAAGCACTTTTCTGGCGTTCAGTTGTaGAAACATCATCACAGACTTATAAGATATGATTCGATGCGACGT | + |
|
Preference number: 6 (lower is better) Translates to: PPTWPCSKHFSGVQL*KHHHRLIRYDSMRR Trigger: ACGTCGCATCGAATCATATCTTATAAGTCTGTGATGATGTTTCAACAACTGAACGCCAGAAAAGTGCTTAGAGCAAGGCCAGGTAGGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CAA 90 bp | GTCCCTCCTACCTGGCCTTGCTCTAAGCACTTTTCTGGCGTTCAGTaGTTGAAACATCATCACAGACTTATAAGATATGATTCGATGCGA | + |
|
Preference number: 6 (lower is better) Translates to: VPPTWPCSKHFSGVQ*LKHHHRLIRYDSMR Trigger: TCGCATCGAATCATATCTTATAAGTCTGTGATGATGTTTCAACAACTGAACGCCAGAAAAGTGCTTAGAGCAAGGCCAGGTAGGAGGGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS TCA 72 bp | AGCAACGTCACTGTGTATTTGTGGTGGATGTGGAGGTaGGATGAAAATGAACAGACGGTTACAACCATTCCA | + |
|
Preference number: 6 (lower is better) Translates to: SNVTVYLWWMWR*DENEQTVTTIP Trigger: TGGAATGGTTGTAACCGTCTGTTCATTTTCATCTCACCTCCACATCCACCACAAATACACAGTGACGTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS GCA 72 bp | CTGACACTGAGCAACTCTCATCTGCAGACTTCTCTTTaGTCCTTTCCTGGGATGCTGAACTTTTTCATGAAA | + |
|
Preference number: 6 (lower is better) Translates to: LTLSNSHLQTSL*SFPGMLNFFMK Trigger: TTTCATGAAAAAGTTCAGCATCCCAGGAAAGGAGCAAAGAGAAGTCTGCAGATGAGAGTTGCTCAGTGTCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS GCA 72 bp | TCATTATTATTGGCTTCTGTCCCTCCTACCTGGCCTTaGTCTAAGCACTTTTCTGGCGTTCAGTTGTTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: SLLLASVPPTWP*SKHFSGVQLLK Trigger: TTTCAACAACTGAACGCCAGAAAAGTGCTTAGAGCAAGGCCAGGTAGGAGGGACAGAAGCCAATAATAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CCA 72 bp | GGATACAACTGTGTGAGGACTTTCCTGTGTATCCTATaGGTACCTCCTTTCCTAGTTGTGACAATTGCAAAC | + |
|
Preference number: 6 (lower is better) Translates to: GYNCVRTFLCIL*VPPFLVVTIAN Trigger: GTTTGCAATTGTCACAACTAGGAAAGGAGGTACCCATAGGATACACAGGAAAGTCCTCACACAGTTGTATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 ENST00000660785.1 |
||
| CDS GCA 72 bp | TATCCTATGGGTACCTCCTTTCCTAGTTGTGACAATTaGAAACATATCCAGACATTGCCAAATGTCCTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: YPMGTSFPSCDN*KHIQTLPNVLW Trigger: CCAGAGGACATTTGGCAATGTCTGGATATGTTTGCAATTGTCACAACTAGGAAAGGAGGTACCCATAGGATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 ENST00000660785.1 |
||
| CDS CCA 72 bp | AGTTGCCTTGTTATTCAGATAAAGTCTCTAGAAGAATaGACAACAGCCTTTCTGAGTGCAGTGAGGACTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SCLVIQIKSLEE*TTAFLSAVRTS Trigger: GGAAGTCCTCACTGCACTCAGAAAGGCTGTTGTCCATTCTTCTAGAGACTTTATCTGAATAACAAGGCAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CCA 72 bp | ACTAGCCTGAGGTCACACAACTACAGAATTTCCATATaGAAGAAACTTTTGGCAATTACCTGGAAGGGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: TSLRSHNYRISI*KKLLAITWKGL Trigger: AAGCCCCTTCCAGGTAATTGCCAAAAGTTTCTTCCATATGGAAATTCTGTAGTTGTGTGACCTCAGGCTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000669055.1 |
||
| CDS CAA 72 bp | GTTCTGAGGCCCTCTTCTGAGGTCTTTCAATATCCTTaGTTCAAAGCACTCAGGTTTGAACATTATCTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: VLRPSSEVFQYP*FKALRFEHYLG Trigger: CCCAAGATAATGTTCAAACCTGAGTGCTTTGAACAAAGGATATTGAAAGACCTCAGAAGAGGGCCTCAGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CAA 72 bp | CCTAGAGGTGGAGTCTGTTTTCTTGTCCTGTTGATATaGGGTTTGGTTGTGTTACTTGCTTTGAACAATGGG | + |
|
Preference number: 6 (lower is better) Translates to: PRGGVCFLVLLI*GLVVLLALNNG Trigger: CCCATTGTTCAAAGCAAGTAACACAACCAAACCCAATATCAACAGGACAAGAAAACAGACTCCACCTCTAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000655482.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CAA 72 bp | TGTGCACCTAGAGGTGGAGTCTGTTTTCTTGTCCTGTaGATATTGGGTTTGGTTGTGTTACTTGCTTTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: CAPRGGVCFLVL*ILGLVVLLALN Trigger: GTTCAAAGCAAGTAACACAACCAAACCCAATATCAACAGGACAAGAAAACAGACTCCACCTCTAGGTGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000655482.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CAA 90 bp | GTTTGTGCACCTAGAGGTGGAGTCTGTTTTCTTGTCCTGTTGATATaGGGTTTGGTTGTGTTACTTGCTTTGAACAATGGGATGTTAGCA | + |
|
Preference number: 6 (lower is better) Translates to: VCAPRGGVCFLVLLI*GLVVLLALNNGMLA Trigger: TGCTAACATCCCATTGTTCAAAGCAAGTAACACAACCAAACCCAATATCAACAGGACAAGAAAACAGACTCCACCTCTAGGTGCACAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENST00000655482.1 ENST00000663665.1 ENST00000666125.1 ENST00000667132.1 ENST00000670744.1 ENST00000670842.1 ENST00000671184.1 |
||
| CDS CAA 72 bp | ATCCTTTGTTCAAAGCACTCAGGTTTGAACATTATCTaGGGGTATTGTTTTCTGAGTCCTGACACTGAGCAA | + |
|
Preference number: 6 (lower is better) Translates to: ILCSKHSGLNII*GYCFLSPDTEQ Trigger: TTGCTCAGTGTCAGGACTCAGAAAACAATACCCCAAGATAATGTTCAAACCTGAGTGCTTTGAACAAAGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CAA 90 bp | TCTTTCAATATCCTTTGTTCAAAGCACTCAGGTTTGAACATTATCTaGGGGTATTGTTTTCTGAGTCCTGACACTGAGCAACTCTCATCT | + |
|
Preference number: 6 (lower is better) Translates to: SFNILCSKHSGLNII*GYCFLSPDTEQLSS Trigger: AGATGAGAGTTGCTCAGTGTCAGGACTCAGAAAACAATACCCCAAGATAATGTTCAAACCTGAGTGCTTTGAACAAAGGATATTGAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CAA 90 bp | GACAAGTTAGAAAGGAAAGGGGAGGAACTGAATGGTAAACAAAAGTaGCCTTGTTATTCAGATAAAGTCTCTAGAAGAATGGACAACAGC | + |
|
Preference number: 6 (lower is better) Translates to: DKLERKGEELNGKQK*PCYSDKVSRRMDNS Trigger: GCTGTTGTCCATTCTTCTAGAGACTTTATCTGAATAACAAGGCAACTTTTGTTTACCATTCAGTTCCTCCCCTTTCCTTTCTAACTTGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||
| CDS CAA 72 bp | AGGTCTTTCAATATCCTTTGTTCAAAGCACTCAGGTTaGAACATTATCTTGGGGTATTGTTTTCTGAGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: RSFNILCSKHSG*NIILGYCFLSP Trigger: AGGACTCAGAAAACAATACCCCAAGATAATGTTCAAACCTGAGTGCTTTGAACAAAGGATATTGAAAGACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000416742.5 ENST00000433094.1 ENST00000545181.5 ENST00000655482.1 |
||