Pregenerated sensors for LINC00489 (Homo sapiens)
Ensembl gene IDs: ENSG00000225759Ensembl transcript IDs: ENST00000457816.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCCTCCCATTGCAACTTGAGTGGACGTTGCTCAGCCATGGGACTTaGTCTGGCCAATGGGATGAGAGCAGAGGTGCATCGAGCAGGGGC | + |
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Preference number: 5 (lower is better) Translates to: ALPLQLEWTLLSHGT*SGQWDESRGASSRG Trigger: GCCCCTGCTCGATGCACCTCTGCTCTCATCCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 90 bp | AGCAGGGGCTTGATAAGCACTTCCGTGGTTGGGCTTGCCTGCTTGTaGCTCAGCTACTGCCACAAGAACATGCCCAGCCTAGCCTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SRGLISTSVVGLACL*LSYCHKNMPSLACW Trigger: CCAGCAGGCTAGGCTGGGCATGTTCTTGTGGCAGTAGCTGAGGCACAAGCAGGCAAGCCCAACCACGGAAGTGCTTATCAAGCCCCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CCA 90 bp | GGAAGGCCCATGTTATTTTGCAGTGCCCTCCCATTGCAACTTGAGTaGACGTTGCTCAGCCATGGGACTTGCTCTGGCCAATGGGATGAG | + |
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Preference number: 5 (lower is better) Translates to: GRPMLFCSALPLQLE*TLLSHGTCSGQWDE Trigger: CTCATCCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGGGCCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 90 bp | CCATGTTATTTTGCAGTGCCCTCCCATTGCAACTTGAGTGGACGTTaGTCAGCCATGGGACTTGCTCTGGCCAATGGGATGAGAGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: PCYFAVPSHCNLSGR*SAMGLALANGMRAE Trigger: CTCTGCTCTCATCCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CAA 72 bp | GGCTTGATAAGCACTTCCGTGGTTGGGCTTGCCTGCTaGTGCCTCAGCTACTGCCACAAGAACATGCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: GLISTSVVGLAC*CLSYCHKNMPS Trigger: GCTGGGCATGTTCTTGTGGCAGTAGCTGAGGCACAAGCAGGCAAGCCCAACCACGGAAGTGCTTATCAAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 72 bp | TTGCAACTTGAGTGGACGTTGCTCAGCCATGGGACTTaGTCTGGCCAATGGGATGAGAGCAGAGGTGCATCG | + |
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Preference number: 6 (lower is better) Translates to: LQLEWTLLSHGT*SGQWDESRGAS Trigger: CGATGCACCTCTGCTCTCATCCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 72 bp | TTTGCAGTGCCCTCCCATTGCAACTTGAGTGGACGTTaGTCAGCCATGGGACTTGCTCTGGCCAATGGGATG | + |
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Preference number: 6 (lower is better) Translates to: FAVPSHCNLSGR*SAMGLALANGM Trigger: CATCCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CAA 90 bp | AGTGTGGAAGGCCCATGTTATTTTGCAGTGCCCTCCCATTGCAACTaGAGTGGACGTTGCTCAGCCATGGGACTTGCTCTGGCCAATGGG | + |
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Preference number: 6 (lower is better) Translates to: SVEGPCYFAVPSHCN*SGRCSAMGLALANG Trigger: CCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGGGCCTTCCACACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS TCA 72 bp | GCCCATGTTATTTTGCAGTGCCCTCCCATTGCAACTTaGGTGGACGTTGCTCAGCCATGGGACTTGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: AHVILQCPPIAT*VDVAQPWDLLW Trigger: CCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 72 bp | TTGATAAGCACTTCCGTGGTTGGGCTTGCCTGCTTGTaGCTCAGCTACTGCCACAAGAACATGCCCAGCCTA | + |
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Preference number: 6 (lower is better) Translates to: LISTSVVGLACL*LSYCHKNMPSL Trigger: TAGGCTGGGCATGTTCTTGTGGCAGTAGCTGAGGCACAAGCAGGCAAGCCCAACCACGGAAGTGCTTATCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CAA 72 bp | TTTTGCAGTGCCCTCCCATTGCAACTTGAGTGGACGTaGCTCAGCCATGGGACTTGCTCTGGCCAATGGGAT | + |
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Preference number: 6 (lower is better) Translates to: FCSALPLQLEWT*LSHGTCSGQWD Trigger: ATCCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CAA 72 bp | GGCCCATGTTATTTTGCAGTGCCCTCCCATTGCAACTaGAGTGGACGTTGCTCAGCCATGGGACTTGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: GPCYFAVPSHCN*SGRCSAMGLAL Trigger: CAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CAA 90 bp | CCCATGTTATTTTGCAGTGCCCTCCCATTGCAACTTGAGTGGACGTaGCTCAGCCATGGGACTTGCTCTGGCCAATGGGATGAGAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: PMLFCSALPLQLEWT*LSHGTCSGQWDESR Trigger: TCTGCTCTCATCCCATTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 72 bp | GTGGAAGGCCCATGTTATTTTGCAGTGCCCTCCCATTaGAACTTGAGTGGACGTTGCTCAGCCATGGGACTT | + |
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Preference number: 6 (lower is better) Translates to: VEGPCYFAVPSH*NLSGRCSAMGL Trigger: AAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGGGCCTTCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CCA 72 bp | ATGTTATTTTGCAGTGCCCTCCCATTGCAACTTGAGTaGACGTTGCTCAGCCATGGGACTTGCTCTGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: MLFCSALPLQLE*TLLSHGTCSGQ Trigger: TTGGCCAGAGCAAGTCCCATGGCTGAGCAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 72 bp | ACTATGTGTCTACAGTGTGGAAGGCCCATGTTATTTTaGAGTGCCCTCCCATTGCAACTTGAGTGGACGTTG | + |
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Preference number: 6 (lower is better) Translates to: TMCLQCGRPMLF*SALPLQLEWTL Trigger: CAACGTCCACTCAAGTTGCAATGGGAGGGCACTGCAAAATAACATGGGCCTTCCACACTGTAGACACATAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS CCA 72 bp | GATTTAACAAATAGTTTTGAGCCTGCTACTGGCTGCTaGATGGAGATCTTAGGATATAGCAGTGAACAACAC | + |
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Preference number: 6 (lower is better) Translates to: DLTNSFEPATGC*MEILGYSSEQH Trigger: GTGTTGTTCACTGCTATATCCTAAGATCTCCATCCAGCAGCCAGTAGCAGGCTCAAAACTATTTGTTAAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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| CDS GCA 72 bp | ATTGATTTAACAAATAGTTTTGAGCCTGCTACTGGCTaGTGGATGGAGATCTTAGGATATAGCAGTGAACAA | + |
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Preference number: 6 (lower is better) Translates to: IDLTNSFEPATG*WMEILGYSSEQ Trigger: TTGTTCACTGCTATATCCTAAGATCTCCATCCAGCAGCCAGTAGCAGGCTCAAAACTATTTGTTAAATCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457816.1 |
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