Pregenerated sensors for LINC00488 (Homo sapiens)
Ensembl gene IDs: ENSG00000214381Ensembl transcript IDs: ENST00000494582.2, ENST00000648541.1
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGCCTGGGCGACAGAACAAGACTCATGATGGGACTGCAAAGACCCTaGTGTCTGGGGCCTGAACCCACTGGGCCCCTGAAGTTCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: SLGDRTRLMMGLQRP*CLGPEPTGPLKFSF Trigger: GAAGCTGAACTTCAGGGGCCCAGTGGGTTCAGGCCCCAGACACCAGGGTCTTTGCAGTCCCATCATGAGTCTTGTTCTGTCGCCCAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS TCA 90 bp | GAAGTTCAGCTTCCTGCAGCATTCCCAGAATCTGAGGAAGCACCGTaGACCGAGGTCTGGGCTCTGACTTCCCTGATCCTGGAGCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: EVQLPAAFPESEEAP*TEVWALTSLILEPG Trigger: ACCTGGCTCCAGGATCAGGGAAGTCAGAGCCCAGACCTCGGTTCACGGTGCTTCCTCAGATTCTGGGAATGCTGCAGGAAGCTGAACTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS TCA 90 bp | CTTGTTCTAGAGGGATTCATCTGCAGGTTCCTAGATCATCTGTTTTaGCCTACAGTGCCTTGGGGGATGGTTCATACGCTAGTGATCGCT | + |
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Preference number: 5 (lower is better) Translates to: LVLEGFICRFLDHLF*PTVPWGMVHTLVIA Trigger: AGCGATCACTAGCGTATGAACCATCCCCCAAGGCACTGTAGGTCAAAACAGATGATCTAGGAACCTGCAGATGAATCCCTCTAGAACAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS TCA 90 bp | CTGAAGCACATCGATTTCCACACGACTGACTGGAGACATCTAGTGTaGTCGAGACCTCAGCTGTGTGTTATAATCAATGTGCCACCTTTG | + |
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Preference number: 5 (lower is better) Translates to: LKHIDFHTTDWRHLV*SRPQLCVIINVPPL Trigger: CAAAGGTGGCACATTGATTATAACACACAGCTGAGGTCTCGATCACACTAGATGTCTCCAGTCAGTCGTGTGGAAATCGATGTGCTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS TCA 90 bp | GGTCATCCAATAGACTGTTCTGAAGCACATCGATTTCCACACGACTaGCTGGAGACATCTAGTGTGATCGAGACCTCAGCTGTGTGTTAT | + |
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Preference number: 5 (lower is better) Translates to: GHPIDCSEAHRFPHD*LETSSVIETSAVCY Trigger: ATAACACACAGCTGAGGTCTCGATCACACTAGATGTCTCCAGTCAGTCGTGTGGAAATCGATGTGCTTCAGAACAGTCTATTGGATGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS CCA 90 bp | GCTAATTCAATAGAGATAGAAAGTAGGTTAGTTGTTTCTTGGGTTTaGGGAGCTGAAGAAAAATGGAGGGTGATTGACAATGGGTATGGA | + |
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Preference number: 5 (lower is better) Translates to: ANSIEIESRLVVSWV*GAEEKWRVIDNGYG Trigger: TCCATACCCATTGTCAATCACCCTCCATTTTTCTTCAGCTCCCCAAACCCAAGAAACAACTAACCTACTTTCTATCTCTATTGAATTAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS TCA 90 bp | TTAATCTGTAAAATAGATTTCTCCTGTTGCTACTACCCTCATCTATaGAGGTGTAGACTGCTGAAGGAAATTTCTCTTTTCTCAGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: LICKIDFSCCYYPHL*RCRLLKEISLFSGL Trigger: CAGCCCTGAGAAAAGAGAAATTTCCTTCAGCAGTCTACACCTTCATAGATGAGGGTAGTAGCAACAGGAGAAATCTATTTTACAGATTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS TCA 90 bp | AACACTAGTGCACTACTCTGTTATATTATCCAGCAAGAAATAATGTaGATCTCAAAGAGTGTATTACTGGTCCAAGATCACATGGACCGC | + |
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Preference number: 5 (lower is better) Translates to: NTSALLCYIIQQEIM*ISKSVLLVQDHMDR Trigger: GCGGTCCATGTGATCTTGGACCAGTAATACACTCTTTGAGATTCACATTATTTCTTGCTGGATAATATAACAGAGTAGTGCACTAGTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648541.1 |
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| CDS GCA 90 bp | AAGATGTGGAGTTATAAAAGCCATTACGTGTTCAAGCAGCTGCTATaGTCTGTAAATTCAGTATCTGAGGAATGGAATGTGATAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: KMWSYKSHYVFKQLL*SVNSVSEEWNVIGR Trigger: TCTTCCTATCACATTCCATTCCTCAGATACTGAATTTACAGAGCATAGCAGCTGCTTGAACACGTAATGGCTTTTATAACTCCACATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648541.1 |
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| CDS TCA 90 bp | TTCTTACATGCCAGATACTGTTTTAAGACAAATTCCTTGTCAGCTTaGAGTTTACATACTAGTTGGGAGAAGTCAGGGAATAAGTATAGG | + |
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Preference number: 5 (lower is better) Translates to: FLHARYCFKTNSLSA*SLHTSWEKSGNKYR Trigger: CCTATACTTATTCCCTGACTTCTCCCAACTAGTATGTAAACTTCAAGCTGACAAGGAATTTGTCTTAAAACAGTATCTGGCATGTAAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS TCA 90 bp | TTAAGACCATGTGTTGCTCAAGAGGTTAAATACCAAGTTACTGTATaGCCCAGCAATTCCATTCCTAGATGTATACACAAAAGCAATGAA | + |
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Preference number: 5 (lower is better) Translates to: LRPCVAQEVKYQVTV*PSNSIPRCIHKSNE Trigger: TTCATTGCTTTTGTGTATACATCTAGGAATGGAATTGCTGGGTCATACAGTAACTTGGTATTTAACCTCTTGAGCAACACATGGTCTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS CCA 72 bp | GACAGAACAAGACTCATGATGGGACTGCAAAGACCCTaGTGTCTGGGGCCTGAACCCACTGGGCCCCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: DRTRLMMGLQRP*CLGPEPTGPLK Trigger: CTTCAGGGGCCCAGTGGGTTCAGGCCCCAGACACCAGGGTCTTTGCAGTCCCATCATGAGTCTTGTTCTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS TCA 72 bp | CTTCCTGCAGCATTCCCAGAATCTGAGGAAGCACCGTaGACCGAGGTCTGGGCTCTGACTTCCCTGATCCTG | + |
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Preference number: 6 (lower is better) Translates to: LPAAFPESEEAP*TEVWALTSLIL Trigger: CAGGATCAGGGAAGTCAGAGCCCAGACCTCGGTTCACGGTGCTTCCTCAGATTCTGGGAATGCTGCAGGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS TCA 72 bp | GAGGGATTCATCTGCAGGTTCCTAGATCATCTGTTTTaGCCTACAGTGCCTTGGGGGATGGTTCATACGCTA | + |
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Preference number: 6 (lower is better) Translates to: EGFICRFLDHLF*PTVPWGMVHTL Trigger: TAGCGTATGAACCATCCCCCAAGGCACTGTAGGTCAAAACAGATGATCTAGGAACCTGCAGATGAATCCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS TCA 72 bp | CCACACTTTCTTCCCCTGCTTTGCGCCCCGAGACAATaGCTGAGCATTGGTGAGGATAATAGTATTGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: PHFLPLLCAPRQ*LSIGEDNSIGL Trigger: TAAGCCAATACTATTATCCTCACCAATGCTCAGTCATTGTCTCGGGGCGCAAAGCAGGGGAAGAAAGTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000648541.1 |
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| CDS GCA 72 bp | GAGGATCAAAAGGCGTTCCAGGGCAAGAGACCGGCATaGACAAAGATGTGGAGTTATAAAAGCCATTACGTG | + |
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Preference number: 6 (lower is better) Translates to: EDQKAFQGKRPA*TKMWSYKSHYV Trigger: CACGTAATGGCTTTTATAACTCCACATCTTTGTGCATGCCGGTCTCTTGCCCTGGAACGCCTTTTGATCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000648541.1 |
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| CDS TCA 72 bp | ATAGACTGTTCTGAAGCACATCGATTTCCACACGACTaGCTGGAGACATCTAGTGTGATCGAGACCTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: IDCSEAHRFPHD*LETSSVIETSA Trigger: AGCTGAGGTCTCGATCACACTAGATGTCTCCAGTCAGTCGTGTGGAAATCGATGTGCTTCAGAACAGTCTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS TCA 72 bp | ATCGATTTCCACACGACTGACTGGAGACATCTAGTGTaGTCGAGACCTCAGCTGTGTGTTATAATCAATGTG | + |
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Preference number: 6 (lower is better) Translates to: IDFHTTDWRHLV*SRPQLCVIINV Trigger: CACATTGATTATAACACACAGCTGAGGTCTCGATCACACTAGATGTCTCCAGTCAGTCGTGTGGAAATCGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000494582.2 ENST00000648541.1 |
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| CDS CAA 72 bp | CATCTCAAGACCCCTTCATTTCCTAATTATGTGGCCTaGAGCAGGTTACTTAATCTCGCTGCCTTTCAGATA | + |
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Preference number: 6 (lower is better) Translates to: HLKTPSFPNYVA*SRLLNLAAFQI Trigger: TATCTGAAAGGCAGCGAGATTAAGTAACCTGCTCAAGGCCACATAATTAGGAAATGAAGGGGTCTTGAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS CAA 90 bp | GTCTGGGTTCATCTCAAGACCCCTTCATTTCCTAATTATGTGGCCTaGAGCAGGTTACTTAATCTCGCTGCCTTTCAGATAATAATGATG | + |
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Preference number: 6 (lower is better) Translates to: VWVHLKTPSFPNYVA*SRLLNLAAFQIIMM Trigger: CATCATTATTATCTGAAAGGCAGCGAGATTAAGTAACCTGCTCAAGGCCACATAATTAGGAAATGAAGGGGTCTTGAGATGAACCCAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS TCA 72 bp | AGTCTCTTGGCCATCCAGGACAAGTTGGGTAAAGACTaGATAAACTTAGATGAAGATCCACTATTATGCCCA | + |
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Preference number: 6 (lower is better) Translates to: SLLAIQDKLGKD*INLDEDPLLCP Trigger: TGGGCATAATAGTGGATCTTCATCTAAGTTTATTCAGTCTTTACCCAACTTGTCCTGGATGGCCAAGAGACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS GCA 72 bp | TTTGACTTCCAGTGCTTTATTGACTCATGTGTTGGCTaGAGAAATGTGCCGCTCAAATTTCCTTTAAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: FDFQCFIDSCVG*RNVPLKFPLRE Trigger: TTCTCTTAAAGGAAATTTGAGCGGCACATTTCTGCAGCCAACACATGAGTCAATAAAGCACTGGAAGTCAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648541.1 |
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| CDS CCA 72 bp | TTAGTTGTTTCTTGGGTTTGGGGAGCTGAAGAAAAATaGAGGGTGATTGACAATGGGTATGGAGCTTATTTT | + |
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Preference number: 6 (lower is better) Translates to: LVVSWVWGAEEK*RVIDNGYGAYF Trigger: AAAATAAGCTCCATACCCATTGTCAATCACCCTCCATTTTTCTTCAGCTCCCCAAACCCAAGAAACAACTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS GCA 72 bp | AGTTATAAAAGCCATTACGTGTTCAAGCAGCTGCTATaGTCTGTAAATTCAGTATCTGAGGAATGGAATGTG | + |
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Preference number: 6 (lower is better) Translates to: SYKSHYVFKQLL*SVNSVSEEWNV Trigger: CACATTCCATTCCTCAGATACTGAATTTACAGAGCATAGCAGCTGCTTGAACACGTAATGGCTTTTATAACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648541.1 |
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| CDS TCA 72 bp | AAAATAGATTTCTCCTGTTGCTACTACCCTCATCTATaGAGGTGTAGACTGCTGAAGGAAATTTCTCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: KIDFSCCYYPHL*RCRLLKEISLF Trigger: GAAAAGAGAAATTTCCTTCAGCAGTCTACACCTTCATAGATGAGGGTAGTAGCAACAGGAGAAATCTATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS CCA 72 bp | AATTCAATAGAGATAGAAAGTAGGTTAGTTGTTTCTTaGGTTTGGGGAGCTGAAGAAAAATGGAGGGTGATT | + |
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Preference number: 6 (lower is better) Translates to: NSIEIESRLVVS*VWGAEEKWRVI Trigger: AATCACCCTCCATTTTTCTTCAGCTCCCCAAACCCAAGAAACAACTAACCTACTTTCTATCTCTATTGAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000494582.2 |
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| CDS TCA 72 bp | GCACTACTCTGTTATATTATCCAGCAAGAAATAATGTaGATCTCAAAGAGTGTATTACTGGTCCAAGATCAC | + |
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Preference number: 6 (lower is better) Translates to: ALLCYIIQQEIM*ISKSVLLVQDH Trigger: GTGATCTTGGACCAGTAATACACTCTTTGAGATTCACATTATTTCTTGCTGGATAATATAACAGAGTAGTGC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648541.1 |
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