Pregenerated sensors for LINC00485 (Homo sapiens)
Ensembl gene IDs: ENSG00000258169Ensembl transcript IDs: ENST00000547179.1
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAGCCAATTGCTTCCTTCGAGGTACTTTTCTGTGTGAGGGTCTGCTaGCCCCAGGTGGACAGAAAGACCTTGGCTGGAAACCCAGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KPIASFEVLFCVRVC*PQVDRKTLAGNPES Trigger: AGACTCTGGGTTTCCAGCCAAGGTCTTTCTGTCCACCTGGGGGCAGCAGACCCTCACACAGAAAAGTACCTCGAAGGAAGCAATTGGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS GCA 90 bp | AGAAAGCCAATTGCTTCCTTCGAGGTACTTTTCTGTGTGAGGGTCTaGTGCCCCCAGGTGGACAGAAAGACCTTGGCTGGAAACCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: RKPIASFEVLFCVRV*CPQVDRKTLAGNPE Trigger: CTCTGGGTTTCCAGCCAAGGTCTTTCTGTCCACCTGGGGGCAGCAGACCCTCACACAGAAAAGTACCTCGAAGGAAGCAATTGGCTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS TCA 90 bp | TTGTTCAGTTGGAGGCCTGAGGTTCTGAGCAGCAGTAAGTGCCTTTaGTTAGGTGAAGCAGAAGTAGCGATGTATCAGAAAGGCATTGGG | + |
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Preference number: 5 (lower is better) Translates to: LFSWRPEVLSSSKCL*LGEAEVAMYQKGIG Trigger: CCCAATGCCTTTCTGATACATCGCTACTTCTGCTTCACCTAATCAAAGGCACTTACTGCTGCTCAGAACCTCAGGCCTCCAACTGAACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 90 bp | AAGCATTACGGTGTCATGATTAAGCATGCAAGTTCTGTAACTAGATaGCCCCAACCGGAAACTCAGCCACCAGTTATAAGCTCCGTGCCT | + |
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Preference number: 5 (lower is better) Translates to: KHYGVMIKHASSVTR*PQPETQPPVISSVP Trigger: AGGCACGGAGCTTATAACTGGTGGCTGAGTTTCCGGTTGGGGCCATCTAGTTACAGAACTTGCATGCTTAATCATGACACCGTAATGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 90 bp | CCTGACAGGGTGCAGGGTGAAAGTGGTCCATACCAGATTCATGATTaGTTACCAGGTGATTGCAGTTGTCAAGATCTTGTGTTTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: PDRVQGESGPYQIHD*LPGDCSCQDLVFFL Trigger: GAGGAAAAACACAAGATCTTGACAACTGCAATCACCTGGTAACCAATCATGAATCTGGTATGGACCACTTTCACCCTGCACCCTGTCAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 90 bp | GATACGTCTTGTTTCTGTAGGATTCTTGTGAAGATTGTGAGAAGATaGAAACTGCCTGACAGGGTGCAGGGTGAAAGTGGTCCATACCAG | + |
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Preference number: 5 (lower is better) Translates to: DTSCFCRILVKIVRR*KLPDRVQGESGPYQ Trigger: CTGGTATGGACCACTTTCACCCTGCACCCTGTCAGGCAGTTTCCATCTTCTCACAATCTTCACAAGAATCCTACAGAAACAAGACGTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS TCA 90 bp | GAAGATATCCGAGCTGAGACAAAGCATCCGTGGTCTTGGCAGGTCTaGATTCTAAATGACGAATCTTTGCTGAACGACGTGGGATACTTT | + |
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Preference number: 5 (lower is better) Translates to: EDIRAETKHPWSWQV*ILNDESLLNDVGYF Trigger: AAAGTATCCCACGTCGTTCAGCAAAGATTCGTCATTTAGAATTCAGACCTGCCAAGACCACGGATGCTTTGTCTCAGCTCGGATATCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 90 bp | AGTGCCTATCTCATAGGACTGTTGCCAAGTTTAAATAGGCCACTGTaGGTGATGTACTTTGCACAGAGCAAGTATGCCATCGTGTTTTGT | + |
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Preference number: 5 (lower is better) Translates to: SAYLIGLLPSLNRPL*VMYFAQSKYAIVFC Trigger: ACAAAACACGATGGCATACTTGCTCTGTGCAAAGTACATCACCCACAGTGGCCTATTTAAACTTGGCAACAGTCCTATGAGATAGGCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS GCA 90 bp | GGTGAAAGTGGTCCATACCAGATTCATGATTGGTTACCAGGTGATTaGAGTTGTCAAGATCTTGTGTTTTTCCTCGGAAACAAGGAAACT | + |
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Preference number: 5 (lower is better) Translates to: GESGPYQIHDWLPGD*SCQDLVFFLGNKET Trigger: AGTTTCCTTGTTTCCGAGGAAAAACACAAGATCTTGACAACTGCAATCACCTGGTAACCAATCATGAATCTGGTATGGACCACTTTCACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 90 bp | TTGATTTTGGAAGCGTCCTTCGAGTATAAGTCTTTAGAATATTCATaGGTCCATAATTTGGAAGACTTGTGTTTGAAAGCCAGGAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: LILEASFEYKSLEYS*VHNLEDLCLKARSS Trigger: TGAGCTCCTGGCTTTCAAACACAAGTCTTCCAAATTATGGACCCATGAATATTCTAAAGACTTATACTCGAAGGACGCTTCCAAAATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 90 bp | TTAAACATCGTGAGAAGTCCTGCAGGGTTAAAACCCTATTTAACTTaGTTCAACCCAAATTTATTTGATTTTGGAAGCGTCCTTCGAGTA | + |
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Preference number: 5 (lower is better) Translates to: LNIVRSPAGLKPYLT*FNPNLFDFGSVLRV Trigger: TACTCGAAGGACGCTTCCAAAATCAAATAAATTTGGGTTGAACCAAGTTAAATAGGGTTTTAACCCTGCAGGACTTCTCACGATGTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 90 bp | TTATTTGTATTACTGTTCAATATGAGCCGTTTTGTGGACTGTAGTTaGGAAGACAGACATAAAAGCAGTAATCTAACTACTCACACTAGA | + |
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Preference number: 5 (lower is better) Translates to: LFVLLFNMSRFVDCS*EDRHKSSNLTTHTR Trigger: TCTAGTGTGAGTAGTTAGATTACTGCTTTTATGTCTGTCTTCCCAACTACAGTCCACAAAACGGCTCATATTGAACAGTAATACAAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS GCA 72 bp | ATTGCTTCCTTCGAGGTACTTTTCTGTGTGAGGGTCTaGTGCCCCCAGGTGGACAGAAAGACCTTGGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: IASFEVLFCVRV*CPQVDRKTLAG Trigger: TCCAGCCAAGGTCTTTCTGTCCACCTGGGGGCAGCAGACCCTCACACAGAAAAGTACCTCGAAGGAAGCAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS TCA 72 bp | CGAGCTGAGACAAAGCATCCGTGGTCTTGGCAGGTCTaGATTCTAAATGACGAATCTTTGCTGAACGACGTG | + |
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Preference number: 6 (lower is better) Translates to: RAETKHPWSWQV*ILNDESLLNDV Trigger: CACGTCGTTCAGCAAAGATTCGTCATTTAGAATTCAGACCTGCCAAGACCACGGATGCTTTGTCTCAGCTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS TCA 72 bp | TGGAGGCCTGAGGTTCTGAGCAGCAGTAAGTGCCTTTaGTTAGGTGAAGCAGAAGTAGCGATGTATCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: WRPEVLSSSKCL*LGEAEVAMYQK Trigger: TTTCTGATACATCGCTACTTCTGCTTCACCTAATCAAAGGCACTTACTGCTGCTCAGAACCTCAGGCCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 72 bp | GGTGTCATGATTAAGCATGCAAGTTCTGTAACTAGATaGCCCCAACCGGAAACTCAGCCACCAGTTATAAGC | + |
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Preference number: 6 (lower is better) Translates to: GVMIKHASSVTR*PQPETQPPVIS Trigger: GCTTATAACTGGTGGCTGAGTTTCCGGTTGGGGCCATCTAGTTACAGAACTTGCATGCTTAATCATGACACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 72 bp | GTGCAGGGTGAAAGTGGTCCATACCAGATTCATGATTaGTTACCAGGTGATTGCAGTTGTCAAGATCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: VQGESGPYQIHD*LPGDCSCQDLV Trigger: CACAAGATCTTGACAACTGCAATCACCTGGTAACCAATCATGAATCTGGTATGGACCACTTTCACCCTGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 72 bp | CTCATAGGACTGTTGCCAAGTTTAAATAGGCCACTGTaGGTGATGTACTTTGCACAGAGCAAGTATGCCATC | + |
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Preference number: 6 (lower is better) Translates to: LIGLLPSLNRPL*VMYFAQSKYAI Trigger: GATGGCATACTTGCTCTGTGCAAAGTACATCACCCACAGTGGCCTATTTAAACTTGGCAACAGTCCTATGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CAA 72 bp | ATGGGGAACACAATTAGTGCCTATCTCATAGGACTGTaGCCAAGTTTAAATAGGCCACTGTGGGTGATGTAC | + |
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Preference number: 6 (lower is better) Translates to: MGNTISAYLIGL*PSLNRPLWVMY Trigger: GTACATCACCCACAGTGGCCTATTTAAACTTGGCAACAGTCCTATGAGATAGGCACTAATTGTGTTCCCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS GCA 72 bp | GGTCCATACCAGATTCATGATTGGTTACCAGGTGATTaGAGTTGTCAAGATCTTGTGTTTTTCCTCGGAAAC | + |
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Preference number: 6 (lower is better) Translates to: GPYQIHDWLPGD*SCQDLVFFLGN Trigger: GTTTCCGAGGAAAAACACAAGATCTTGACAACTGCAATCACCTGGTAACCAATCATGAATCTGGTATGGACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS GCA 72 bp | TTTAGATTTATTCTAGAAAGGCCTTGTGTTGGCCATTaGTATCATGCTTGTTCCAGCTGCAATACTCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: FRFILERPCVGH*YHACSSCNTPA Trigger: TGCTGGAGTATTGCAGCTGGAACAAGCATGATAGCAATGGCCAACACAAGGCCTTTCTAGAATAAATCTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CAA 90 bp | GCGTCCTTCGAGTATAAGTCTTTAGAATATTCATGGGTCCATAATTaGGAAGACTTGTGTTTGAAAGCCAGGAGCTCAGAAAGCCAATTG | + |
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Preference number: 6 (lower is better) Translates to: ASFEYKSLEYSWVHN*EDLCLKARSSESQL Trigger: CAATTGGCTTTCTGAGCTCCTGGCTTTCAAACACAAGTCTTCCAAATTATGGACCCATGAATATTCTAAAGACTTATACTCGAAGGACGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CAA 90 bp | ATTTGTAAAATGGGGAACACAATTAGTGCCTATCTCATAGGACTGTaGCCAAGTTTAAATAGGCCACTGTGGGTGATGTACTTTGCACAG | + |
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Preference number: 6 (lower is better) Translates to: ICKMGNTISAYLIGL*PSLNRPLWVMYFAQ Trigger: CTGTGCAAAGTACATCACCCACAGTGGCCTATTTAAACTTGGCAACAGTCCTATGAGATAGGCACTAATTGTGTTCCCCATTTTACAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 72 bp | GAAGCGTCCTTCGAGTATAAGTCTTTAGAATATTCATaGGTCCATAATTTGGAAGACTTGTGTTTGAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: EASFEYKSLEYS*VHNLEDLCLKA Trigger: GGCTTTCAAACACAAGTCTTCCAAATTATGGACCCATGAATATTCTAAAGACTTATACTCGAAGGACGCTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 72 bp | GTGAGAAGTCCTGCAGGGTTAAAACCCTATTTAACTTaGTTCAACCCAAATTTATTTGATTTTGGAAGCGTC | + |
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Preference number: 6 (lower is better) Translates to: VRSPAGLKPYLT*FNPNLFDFGSV Trigger: GACGCTTCCAAAATCAAATAAATTTGGGTTGAACCAAGTTAAATAGGGTTTTAACCCTGCAGGACTTCTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CAA 72 bp | TCTTTTAAAGCGGGGCGGCATAAAGCCATTGCTTTATaGAAGCATTTATCAGAGTATCCCATTACATACTTG | + |
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Preference number: 6 (lower is better) Translates to: SFKAGRHKAIAL*KHLSEYPITYL Trigger: CAAGTATGTAATGGGATACTCTGATAAATGCTTCAATAAAGCAATGGCTTTATGCCGCCCCGCTTTAAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CCA 72 bp | TTACTGTTCAATATGAGCCGTTTTGTGGACTGTAGTTaGGAAGACAGACATAAAAGCAGTAATCTAACTACT | + |
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Preference number: 6 (lower is better) Translates to: LLFNMSRFVDCS*EDRHKSSNLTT Trigger: AGTAGTTAGATTACTGCTTTTATGTCTGTCTTCCCAACTACAGTCCACAAAACGGCTCATATTGAACAGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CAA 90 bp | GCCATTGCTTTATTGAAGCATTTATCAGAGTATCCCATTACATACTaGTCCTCTATGTTGATTAGAAGGAATAAAAGGGTTCCAAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: AIALLKHLSEYPITY*SSMLIRRNKRVPKP Trigger: TGGCTTTGGAACCCTTTTATTCCTTCTAATCAACATAGAGGACAAGTATGTAATGGGATACTCTGATAAATGCTTCAATAAAGCAATGGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS TCA 72 bp | GGCTCATTGACTTATTACAAAGAAGGGCAGAAAATCTaGGTGAATGTTATGTCTCTAATTATGCTCTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: GSLTYYKEGQKI*VNVMSLIMLFR Trigger: CCTAAAGAGCATAATTAGAGACATAACATTCACTCAGATTTTCTGCCCTTCTTTGTAATAAGTCAATGAGCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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| CDS CAA 72 bp | TTATCAGAGTATCCCATTACATACTTGTCCTCTATGTaGATTAGAAGGAATAAAAGGGTTCCAAAGCCAAAT | + |
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Preference number: 6 (lower is better) Translates to: LSEYPITYLSSM*IRRNKRVPKPN Trigger: ATTTGGCTTTGGAACCCTTTTATTCCTTCTAATCAACATAGAGGACAAGTATGTAATGGGATACTCTGATAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000547179.1 |
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