Pregenerated sensors for LINC00479 (Homo sapiens)
Ensembl gene IDs: ENSG00000236384Ensembl transcript IDs: ENST00000412102.5, ENST00000457881.5, ENST00000586552.5, ENST00000589300.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCCAGCCTGCCGCCCTGCGCGCACCGGCTGTGTTTCTGTGCGTTGTaGTTTTGTTCTGCATGCTGGGCGGGCGGAACAGGGTGCTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: ASLPPCAHRLCFCAL*FCSACWAGGTGCWH Trigger: ATGCCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAGGGCGGCAGGCTGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS GCA 90 bp | GGGAGAAGCCAGCCTGCCGCCCTGCGCGCACCGGCTGTGTTTCTGTaGGTTGTGCTTTTGTTCTGCATGCTGGGCGGGCGGAACAGGGTG | + |
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Preference number: 5 (lower is better) Translates to: GRSQPAALRAPAVFL*VVLLFCMLGGRNRV Trigger: CACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAGGGCGGCAGGCTGGCTTCTCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS GCA 90 bp | GCCGGAGACCTCGGCAGGAGGGAGGGAGAAGCCAGCCTGCCGCCCTaGGCGCACCGGCTGTGTTTCTGTGCGTTGTGCTTTTGTTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: AGDLGRREGEASLPP*AHRLCFCALCFCSA Trigger: TGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAGGGCGGCAGGCTGGCTTCTCCCTCCCTCCTGCCGAGGTCTCCGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS GCA 90 bp | GCCCTGCGCGCACCGGCTGTGTTTCTGTGCGTTGTGCTTTTGTTCTaGATGCTGGGCGGGCGGAACAGGGTGCTGGCATCCAGGCTCACC | + |
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Preference number: 5 (lower is better) Translates to: ALRAPAVFLCVVLLF*MLGGRNRVLASRLT Trigger: GGTGAGCCTGGATGCCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS CCA 90 bp | GCTGCTGGGCTGGCTCCAAGGCTCCTCCGTCCATGGCTGCTGGGCTaGCTCGGAGGCTGCCTCCGTCCATGGTCTATTTGGTACATGCAG | + |
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Preference number: 5 (lower is better) Translates to: AAGLAPRLLRPWLLG*LGGCLRPWSIWYMQ Trigger: CTGCATGTACCAAATAGACCATGGACGGAGGCAGCCTCCGAGCCAGCCCAGCAGCCATGGACGGAGGAGCCTTGGAGCCAGCCCAGCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589300.1 |
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| CDS CCA 90 bp | GGAGAGCTGCTGGGCTGGCTCCAAGGCTCCTCCGTCCATGGCTGCTaGGCTGGCTCGGAGGCTGCCTCCGTCCATGGTCTATTTGGTACA | + |
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Preference number: 5 (lower is better) Translates to: GELLGWLQGSSVHGC*AGSEAASVHGLFGT Trigger: TGTACCAAATAGACCATGGACGGAGGCAGCCTCCGAGCCAGCCCAGCAGCCATGGACGGAGGAGCCTTGGAGCCAGCCCAGCAGCTCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589300.1 |
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| CDS CCA 90 bp | GCGCACCGGCTGTGTTTCTGTGCGTTGTGCTTTTGTTCTGCATGCTaGGCGGGCGGAACAGGGTGCTGGCATCCAGGCTCACCCAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: AHRLCFCALCFCSAC*AGGTGCWHPGSPRG Trigger: CCCTCTGGGTGAGCCTGGATGCCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS GCA 90 bp | TGCGCGCACCGGCTGTGTTTCTGTGCGTTGTGCTTTTGTTCTGCATaGTGGGCGGGCGGAACAGGGTGCTGGCATCCAGGCTCACCCAGA | + |
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Preference number: 5 (lower is better) Translates to: CAHRLCFCALCFCSA*WAGGTGCWHPGSPR Trigger: TCTGGGTGAGCCTGGATGCCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS GCA 90 bp | ACTGGGCCTCCTAAATTCTGTGTGGTAACCGACTGCCACCGGACATaGTGTTTACTTCTCTATCCTCACGCAGCCAGTTGCCACATTCAA | + |
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Preference number: 5 (lower is better) Translates to: TGPPKFCVVTDCHRT*CLLLYPHAASCHIQ Trigger: TTGAATGTGGCAACTGGCTGCGTGAGGATAGAGAAGTAAACAGCATGTCCGGTGGCAGTCGGTTACCACACAGAATTTAGGAGGCCCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS GCA 90 bp | CATTTGCATTTCACTGGGCCTCCTAAATTCTGTGTGGTAACCGACTaGCACCGGACATGCTGTTTACTTCTCTATCCTCACGCAGCCAGT | + |
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Preference number: 5 (lower is better) Translates to: HLHFTGPPKFCVVTD*HRTCCLLLYPHAAS Trigger: ACTGGCTGCGTGAGGATAGAGAAGTAAACAGCATGTCCGGTGGCAGTCGGTTACCACACAGAATTTAGGAGGCCCAGTGAAATGCAAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS TCA 90 bp | TACTTTCCTAGGGCGGCAGTCACAAGATACCACAGACTGGGTGGCTaGAAACACAGAAATGCGTTCTTTGGCAGTTCTGGAAGCTATCAT | + |
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Preference number: 5 (lower is better) Translates to: YFPRAAVTRYHRLGG*KHRNAFFGSSGSYH Trigger: ATGATAGCTTCCAGAACTGCCAAAGAACGCATTTCTGTGTTTTCAGCCACCCAGTCTGTGGTATCTTGTGACTGCCGCCCTAGGAAAGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS TCA 90 bp | AGTTGCCACATTCAACATAACACTGCAAATATTGCCGGTGGATCCTaGCTTCCTCGTGGACCCTACTGTGTCGGGAAAAACAAACAAACG | + |
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Preference number: 5 (lower is better) Translates to: SCHIQHNTANIAGGS*LPRGPYCVGKNKQT Trigger: CGTTTGTTTGTTTTTCCCGACACAGTAGGGTCCACGAGGAAGTCAGGATCCACCGGCAATATTTGCAGTGTTATGTTGAATGTGGCAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412102.5 ENST00000457881.5 ENST00000589300.1 |
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| CDS TCA 90 bp | CCTCTAGGTGGTATTTCAAAGGGTACGTATTTCCCCCACCCTTCATaGATTAACTCCTTGTTTTACTTTCCTAGGGCGGCAGTCACAAGA | + |
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Preference number: 5 (lower is better) Translates to: PLGGISKGTYFPHPS*INSLFYFPRAAVTR Trigger: TCTTGTGACTGCCGCCCTAGGAAAGTAAAACAAGGAGTTAATTCATGAAGGGTGGGGGAAATACGTACCCTTTGAAATACCACCTAGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS TCA 90 bp | TCAAAATTCCGAGTGACGTGCAACTATTTCATAAACTGGAGCACATaGTCGGGTGTACTATTACCCCTTCCTCTAGGTGGTATTTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: SKFRVTCNYFINWST*SGVLLPLPLGGISK Trigger: CTTTGAAATACCACCTAGAGGAAGGGGTAATAGTACACCCGATCATGTGCTCCAGTTTATGAAATAGTTGCACGTCACTCGGAATTTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS GCA 90 bp | TGTCTGTATCCAAATTTCTCCTTTTTGAAAGGACACCAGTCATGCTaGACTAGGGTCCCTGCTAATGACCTCATTTTAATCAGTTACTCT | + |
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Preference number: 5 (lower is better) Translates to: CLYPNFSFLKGHQSC*TRVPANDLILISYS Trigger: AGAGTAACTGATTAAAATGAGGTCATTAGCAGGGACCCTAGTGCAGCATGACTGGTGTCCTTTCAAAAAGGAGAAATTTGGATACAGACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS GCA 72 bp | CCGGAGACCTCGGCAGGAGGGAGGGAGAAGCCAGCCTaGCGCCCTGCGCGCACCGGCTGTGTTTCTGTGCGT | + |
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Preference number: 6 (lower is better) Translates to: PETSAGGREKPA*RPARTGCVSVR Trigger: ACGCACAGAAACACAGCCGGTGCGCGCAGGGCGGCAGGCTGGCTTCTCCCTCCCTCCTGCCGAGGTCTCCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS CCA 72 bp | CTGGGCTGGCTCCAAGGCTCCTCCGTCCATGGCTGCTaGGCTGGCTCGGAGGCTGCCTCCGTCCATGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LGWLQGSSVHGC*AGSEAASVHGL Trigger: GAGACCATGGACGGAGGCAGCCTCCGAGCCAGCCCAGCAGCCATGGACGGAGGAGCCTTGGAGCCAGCCCAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CCA 72 bp | CTGGGCTGGCTCCAAGGCTCCTCCGTCCATGGCTGCTaGGCTGGCTCGGAGGCTGCCTCCGTCCATGGTCTA | + |
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Preference number: 6 (lower is better) Translates to: LGWLQGSSVHGC*AGSEAASVHGL Trigger: TAGACCATGGACGGAGGCAGCCTCCGAGCCAGCCCAGCAGCCATGGACGGAGGAGCCTTGGAGCCAGCCCAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589300.1 |
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| CDS GCA 72 bp | CAGCCTGCCGCCCTGCGCGCACCGGCTGTGTTTCTGTaGGTTGTGCTTTTGTTCTGCATGCTGGGCGGGCGG | + |
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Preference number: 6 (lower is better) Translates to: QPAALRAPAVFL*VVLLFCMLGGR Trigger: CCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAGGGCGGCAGGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS CAA 90 bp | CCTGCCGCCCTGCGCGCACCGGCTGTGTTTCTGTGCGTTGTGCTTTaGTTCTGCATGCTGGGCGGGCGGAACAGGGTGCTGGCATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PAALRAPAVFLCVVL*FCMLGGRNRVLASR Trigger: CCTGGATGCCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAGGGCGGCAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS CAA 90 bp | GAAGCCAGCCTGCCGCCCTGCGCGCACCGGCTGTGTTTCTGTGCGTaGTGCTTTTGTTCTGCATGCTGGGCGGGCGGAACAGGGTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: EASLPPCAHRLCFCA*CFCSACWAGGTGCW Trigger: CCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAGGGCGGCAGGCTGGCTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS TCA 72 bp | TCTAGGGAGCCTTGGAGGTCTGATGAGGCCAGGGCTTaGAGGAGAGCCGCGGAGCACGCCAGGATCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: SREPWRSDEARA*RRAAEHARIQA Trigger: AGCCTGGATCCTGGCGTGCTCCGCGGCTCTCCTTCAAGCCCTGGCCTCATCAGACCTCCAAGGCTCCCTAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412102.5 ENST00000457881.5 ENST00000589300.1 |
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| CDS CAA 90 bp | CTGGCACTGCCAGGCGTCCCTCGGCTTGTAAGGGCGTCACTCCCGTaGCAGGCCGTCTTCTCCTTGCCCCTTTACTTCACCTTCCCTCAG | + |
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Preference number: 6 (lower is better) Translates to: LALPGVPRLVRASLP*QAVFSLPLYFTFPQ Trigger: CTGAGGGAAGGTGAAGTAAAGGGGCAAGGAGAAGACGGCCTGCAACGGGAGTGACGCCCTTACAAGCCGAGGGACGCCTGGCAGTGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CAA 72 bp | CTGCGCGCACCGGCTGTGTTTCTGTGCGTTGTGCTTTaGTTCTGCATGCTGGGCGGGCGGAACAGGGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LRAPAVFLCVVL*FCMLGGRNRVL Trigger: CAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGCGCGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS CAA 72 bp | CCAGGCGTCCCTCGGCTTGTAAGGGCGTCACTCCCGTaGCAGGCCGTCTTCTCCTTGCCCCTTTACTTCACC | + |
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Preference number: 6 (lower is better) Translates to: PGVPRLVRASLP*QAVFSLPLYFT Trigger: GGTGAAGTAAAGGGGCAAGGAGAAGACGGCCTGCAACGGGAGTGACGCCCTTACAAGCCGAGGGACGCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS GCA 72 bp | GCACCGGCTGTGTTTCTGTGCGTTGTGCTTTTGTTCTaGATGCTGGGCGGGCGGAACAGGGTGCTGGCATCC | + |
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Preference number: 6 (lower is better) Translates to: APAVFLCVVLLF*MLGGRNRVLAS Trigger: GGATGCCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAGCCGGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS CCA 72 bp | AAGGAGAGCCGCGGAGCACGCCAGGATCCAGGCTTGTaGGTAGCAGCATCCCTTAGCACTTCCATGGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: KESRGARQDPGL*VAASLSTSMAR Trigger: TCTGGCCATGGAAGTGCTAAGGGATGCTGCTACCCACAAGCCTGGATCCTGGCGTGCTCCGCGGCTCTCCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589300.1 |
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| CDS CAA 72 bp | TTGAAGGAGAGCCGCGGAGCACGCCAGGATCCAGGCTaGTGGGTAGCAGCATCCCTTAGCACTTCCATGGCC | + |
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Preference number: 6 (lower is better) Translates to: LKESRGARQDPG*WVAASLSTSMA Trigger: GGCCATGGAAGTGCTAAGGGATGCTGCTACCCACAAGCCTGGATCCTGGCGTGCTCCGCGGCTCTCCTTCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000589300.1 |
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| CDS CCA 72 bp | CTGTGTTTCTGTGCGTTGTGCTTTTGTTCTGCATGCTaGGCGGGCGGAACAGGGTGCTGGCATCCAGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: LCFCALCFCSAC*AGGTGCWHPGS Trigger: TGAGCCTGGATGCCAGCACCCTGTTCCGCCCGCCCAGCATGCAGAACAAAAGCACAACGCACAGAAACACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS TCA 72 bp | ACGCCTCCATCTGTGGTATTTGGTACATGCAGCTCCTaGGGGGCAAGGCTGAGCTCCTTCTCAGGAACGGAC | + |
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Preference number: 6 (lower is better) Translates to: TPPSVVFGTCSS*GARLSSFSGTD Trigger: GTCCGTTCCTGAGAAGGAGCTCAGCCTTGCCCCTCAGGAGCTGCATGTACCAAATACCACAGATGGAGGCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CAA 90 bp | ATCCTCACGCAGCCAGTTGCCACATTCAACATAACACTGCAAATATaGCCGGTGGATCCTGACTTCCTCGTGGACCCTACTGTGTCGGGA | + |
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Preference number: 6 (lower is better) Translates to: ILTQPVATFNITLQI*PVDPDFLVDPTVSG Trigger: TCCCGACACAGTAGGGTCCACGAGGAAGTCAGGATCCACCGGCAATATTTGCAGTGTTATGTTGAATGTGGCAACTGGCTGCGTGAGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412102.5 ENST00000457881.5 ENST00000589300.1 |
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| CDS TCA 72 bp | AGGGCGGCAGTCACAAGATACCACAGACTGGGTGGCTaGAAACACAGAAATGCGTTCTTTGGCAGTTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: RAAVTRYHRLGG*KHRNAFFGSSG Trigger: TCCAGAACTGCCAAAGAACGCATTTCTGTGTTTTCAGCCACCCAGTCTGTGGTATCTTGTGACTGCCGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS GCA 72 bp | CCTAAATTCTGTGTGGTAACCGACTGCCACCGGACATaGTGTTTACTTCTCTATCCTCACGCAGCCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: PKFCVVTDCHRT*CLLLYPHAASC Trigger: GCAACTGGCTGCGTGAGGATAGAGAAGTAAACAGCATGTCCGGTGGCAGTCGGTTACCACACAGAATTTAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS TCA 72 bp | CGTTCTTTGGCAGTTCTGGAAGCTATCATGGAATCCTaGAATCAAGGTGTGTCCCGGATGTCTCCAGGGAGA | + |
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Preference number: 6 (lower is better) Translates to: RSLAVLEAIMES*NQGVSRMSPGR Trigger: TCTCCCTGGAGACATCCGGGACACACCTTGATTTCAGGATTCCATGATAGCTTCCAGAACTGCCAAAGAACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS GCA 72 bp | TTCACTGGGCCTCCTAAATTCTGTGTGGTAACCGACTaGCACCGGACATGCTGTTTACTTCTCTATCCTCAC | + |
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Preference number: 6 (lower is better) Translates to: FTGPPKFCVVTD*HRTCCLLLYPH Trigger: GTGAGGATAGAGAAGTAAACAGCATGTCCGGTGGCAGTCGGTTACCACACAGAATTTAGGAGGCCCAGTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000412102.5 ENST00000457881.5 |
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| CDS CCA 72 bp | ACTTTCCTAGGGCGGCAGTCACAAGATACCACAGACTaGGTGGCTGAAAACACAGAAATGCGTTCTTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: TFLGRQSQDTTD*VAENTEMRSLA Trigger: TGCCAAAGAACGCATTTCTGTGTTTTCAGCCACCCAGTCTGTGGTATCTTGTGACTGCCGCCCTAGGAAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CAA 72 bp | CAGCCAGTTGCCACATTCAACATAACACTGCAAATATaGCCGGTGGATCCTGACTTCCTCGTGGACCCTACT | + |
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Preference number: 6 (lower is better) Translates to: QPVATFNITLQI*PVDPDFLVDPT Trigger: AGTAGGGTCCACGAGGAAGTCAGGATCCACCGGCAATATTTGCAGTGTTATGTTGAATGTGGCAACTGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000412102.5 ENST00000457881.5 ENST00000589300.1 |
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| CDS CCA 72 bp | CACTGCAAATATTGCCGGTGGATCCTGACTTCCTCGTaGACCCTACTGTGTCGGGAAAAACAAACAAACGAA | + |
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Preference number: 6 (lower is better) Translates to: HCKYCRWILTSS*TLLCREKQTNE Trigger: TTCGTTTGTTTGTTTTTCCCGACACAGTAGGGTCCACGAGGAAGTCAGGATCCACCGGCAATATTTGCAGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412102.5 ENST00000457881.5 ENST00000589300.1 |
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| CDS CCA 72 bp | CACATGATCGGGTGTACTATTACCCCTTCCTCTAGGTaGTATTTCAAAGGGTACGTATTTCCCCCACCCTTC | + |
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Preference number: 6 (lower is better) Translates to: HMIGCTITPSSR*YFKGYVFPPPF Trigger: GAAGGGTGGGGGAAATACGTACCCTTTGAAATACCACCTAGAGGAAGGGGTAATAGTACACCCGATCATGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CAA 72 bp | CAGCCAGTTGCCACATTCAACATAACACTGCAAATATaGCCGGTGGATCCTGACTTCCTCGTGGACCCTAAT | + |
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Preference number: 6 (lower is better) Translates to: QPVATFNITLQI*PVDPDFLVDPN Trigger: ATTAGGGTCCACGAGGAAGTCAGGATCCACCGGCAATATTTGCAGTGTTATGTTGAATGTGGCAACTGGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586552.5 |
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| CDS CAA 90 bp | ATCCTCACGCAGCCAGTTGCCACATTCAACATAACACTGCAAATATaGCCGGTGGATCCTGACTTCCTCGTGGACCCTAATTTGGTACAT | + |
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Preference number: 6 (lower is better) Translates to: ILTQPVATFNITLQI*PVDPDFLVDPNLVH Trigger: ATGTACCAAATTAGGGTCCACGAGGAAGTCAGGATCCACCGGCAATATTTGCAGTGTTATGTTGAATGTGGCAACTGGCTGCGTGAGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000586552.5 |
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| CDS TCA 72 bp | ATTCAACATAACACTGCAAATATTGCCGGTGGATCCTaGCTTCCTCGTGGACCCTACTGTGTCGGGAAAAAC | + |
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Preference number: 6 (lower is better) Translates to: IQHNTANIAGGS*LPRGPYCVGKN Trigger: GTTTTTCCCGACACAGTAGGGTCCACGAGGAAGTCAGGATCCACCGGCAATATTTGCAGTGTTATGTTGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000412102.5 ENST00000457881.5 ENST00000589300.1 |
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| CDS TCA 72 bp | CGAGTGACGTGCAACTATTTCATAAACTGGAGCACATaGTCGGGTGTACTATTACCCCTTCCTCTAGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: RVTCNYFINWST*SGVLLPLPLGG Trigger: ACCACCTAGAGGAAGGGGTAATAGTACACCCGATCATGTGCTCCAGTTTATGAAATAGTTGCACGTCACTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CCA 72 bp | CAGACTGGGTGGCTGAAAACACAGAAATGCGTTCTTTaGCAGTTCTGGAAGCTATCATGGAATCCTGAAATC | + |
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Preference number: 6 (lower is better) Translates to: QTGWLKTQKCVL*QFWKLSWNPEI Trigger: GATTTCAGGATTCCATGATAGCTTCCAGAACTGCCAAAGAACGCATTTCTGTGTTTTCAGCCACCCAGTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS GCA 72 bp | ACATGCTGTTTACTTCTCTATCCTCACGCAGCCAGTTaGCACATTCAACATAACACTGCAAATATTGCCGGT | + |
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Preference number: 6 (lower is better) Translates to: TCCLLLYPHAAS*HIQHNTANIAG Trigger: ACCGGCAATATTTGCAGTGTTATGTTGAATGTGGCAACTGGCTGCGTGAGGATAGAGAAGTAAACAGCATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000412102.5 ENST00000457881.5 ENST00000586552.5 ENST00000589300.1 |
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| CDS GCA 72 bp | AAGATACCACAGACTGGGTGGCTGAAAACACAGAAATaGGTTCTTTGGCAGTTCTGGAAGCTATCATGGAAT | + |
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Preference number: 6 (lower is better) Translates to: KIPQTGWLKTQK*VLWQFWKLSWN Trigger: ATTCCATGATAGCTTCCAGAACTGCCAAAGAACGCATTTCTGTGTTTTCAGCCACCCAGTCTGTGGTATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CAA 90 bp | GGGCCTGTGGGGATGCTAATCTCAGAGCCACCTCTCCATCTAAGGTaGCTAGAAATTCGGCAAACAAAAGATAGATTTAGAGAACAAAAA | + |
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Preference number: 6 (lower is better) Translates to: GPVGMLISEPPLHLR*LEIRQTKDRFREQK Trigger: TTTTTGTTCTCTAAATCTATCTTTTGTTTGCCGAATTTCTAGCAACCTTAGATGGAGAGGTGGCTCTGAGATTAGCATCCCCACAGGCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS GCA 72 bp | CCAAATTTCTCCTTTTTGAAAGGACACCAGTCATGCTaGACTAGGGTCCCTGCTAATGACCTCATTTTAATC | + |
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Preference number: 6 (lower is better) Translates to: PNFSFLKGHQSC*TRVPANDLILI Trigger: GATTAAAATGAGGTCATTAGCAGGGACCCTAGTGCAGCATGACTGGTGTCCTTTCAAAAAGGAGAAATTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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| CDS CAA 72 bp | GGGATGCTAATCTCAGAGCCACCTCTCCATCTAAGGTaGCTAGAAATTCGGCAAACAAAAGATAGATTTAGA | + |
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Preference number: 6 (lower is better) Translates to: GMLISEPPLHLR*LEIRQTKDRFR Trigger: TCTAAATCTATCTTTTGTTTGCCGAATTTCTAGCAACCTTAGATGGAGAGGTGGCTCTGAGATTAGCATCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000412102.5 |
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