Pregenerated sensors for LINC00474 (Homo sapiens)
Ensembl gene IDs: ENSG00000204148Ensembl transcript IDs: ENST00000374014.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GAGTACAGGTTGCTTGTGAATCCACTAACACAGAGCATGATCTGTTaGTTTTCCTGGTGCTTCACCACCAGCACTTTCTCAGTCTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: EYRLLVNPLTQSMIC*FSWCFTTSTFSVSL Trigger: TAAAGAGACTGAGAAAGTGCTGGTGGTGAAGCACCAGGAAAATCAACAGATCATGCTCTGTGTTAGTGGATTCACAAGCAACCTGTACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS GCA 90 bp | TCCCAACCATTGAGTGACAGAGCTCAGTCATGCAGAACTCAGGTTTaGATGACTCAAATTAGGCACAAGTTCTTGGAATTTTCCATAAGG | + |
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Preference number: 5 (lower is better) Translates to: SQPLSDRAQSCRTQV*MTQIRHKFLEFSIR Trigger: CCTTATGGAAAATTCCAAGAACTTGTGCCTAATTTGAGTCATGCAAACCTGAGTTCTGCATGACTGAGCTCTGTCACTCAATGGTTGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS GCA 90 bp | ACTCAAATTAGGCACAAGTTCTTGGAATTTTCCATAAGGGATAACTaGATCTTTTGCACCTTCACAACTAGAAACGACTCAGCGACTTTT | + |
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Preference number: 5 (lower is better) Translates to: TQIRHKFLEFSIRDN*IFCTFTTRNDSATF Trigger: AAAAGTCGCTGAGTCGTTTCTAGTTGTGAAGGTGCAAAAGATGCAGTTATCCCTTATGGAAAATTCCAAGAACTTGTGCCTAATTTGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS TCA 72 bp | AGCTGGCTTCTGCTTCTCAGCATCATCTTCTGCTATTaGAGTATCTCAGAACTCAGCCCTTGGACACCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SWLLLLSIIFCY*SISELSPWTPS Trigger: AGAGGGTGTCCAAGGGCTGAGTTCTGAGATACTTCAATAGCAGAAGATGATGCTGAGAAGCAGAAGCCAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS CAA 90 bp | GGAGTACAGGTTGCTTGTGAATCCACTAACACAGAGCATGATCTGTaGATTTTCCTGGTGCTTCACCACCAGCACTTTCTCAGTCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: GVQVACESTNTEHDL*IFLVLHHQHFLSLF Trigger: AAAGAGACTGAGAAAGTGCTGGTGGTGAAGCACCAGGAAAATCAACAGATCATGCTCTGTGTTAGTGGATTCACAAGCAACCTGTACTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS CAA 72 bp | GTTGCTTGTGAATCCACTAACACAGAGCATGATCTGTaGATTTTCCTGGTGCTTCACCACCAGCACTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: VACESTNTEHDL*IFLVLHHQHFL Trigger: GAGAAAGTGCTGGTGGTGAAGCACCAGGAAAATCAACAGATCATGCTCTGTGTTAGTGGATTCACAAGCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS GCA 72 bp | CAAATTTCCCAACCATTGAGTGACAGAGCTCAGTCATaGAGAACTCAGGTTTGCATGACTCAAATTAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: QISQPLSDRAQS*RTQVCMTQIRH Trigger: GTGCCTAATTTGAGTCATGCAAACCTGAGTTCTGCATGACTGAGCTCTGTCACTCAATGGTTGGGAAATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS TCA 72 bp | GTGACAGAGCTCAGTCATGCAGAACTCAGGTTTGCATaGCTCAAATTAGGCACAAGTTCTTGGAATTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: VTELSHAELRFA*LKLGTSSWNFP Trigger: TGGAAAATTCCAAGAACTTGTGCCTAATTTGAGTCATGCAAACCTGAGTTCTGCATGACTGAGCTCTGTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS CAA 72 bp | TTGGACACCCTCTTTGCTTTATATACATTCACTCTCTaGGTGACCTCATTCCGTCTCATGCTTCATATCCCA | + |
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Preference number: 6 (lower is better) Translates to: LDTLFALYTFTL*VTSFRLMLHIP Trigger: TGGGATATGAAGCATGAGACGGAATGAGGTCACCAAGAGAGTGAATGTATATAAAGCAAAGAGGGTGTCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS GCA 72 bp | TTGAGTGACAGAGCTCAGTCATGCAGAACTCAGGTTTaGATGACTCAAATTAGGCACAAGTTCTTGGAATTT | + |
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Preference number: 6 (lower is better) Translates to: LSDRAQSCRTQV*MTQIRHKFLEF Trigger: AAATTCCAAGAACTTGTGCCTAATTTGAGTCATGCAAACCTGAGTTCTGCATGACTGAGCTCTGTCACTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS CAA 72 bp | CATCTTCTGCTATTGAAGTATCTCAGAACTCAGCCCTaGGACACCCTCTTTGCTTTATATACATTCACTCTC | + |
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Preference number: 6 (lower is better) Translates to: HLLLLKYLRTQP*DTLFALYTFTL Trigger: GAGAGTGAATGTATATAAAGCAAAGAGGGTGTCCAAGGGCTGAGTTCTGAGATACTTCAATAGCAGAAGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS GCA 72 bp | AGGCACAAGTTCTTGGAATTTTCCATAAGGGATAACTaGATCTTTTGCACCTTCACAACTAGAAACGACTCA | + |
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Preference number: 6 (lower is better) Translates to: RHKFLEFSIRDN*IFCTFTTRNDS Trigger: TGAGTCGTTTCTAGTTGTGAAGGTGCAAAAGATGCAGTTATCCCTTATGGAAAATTCCAAGAACTTGTGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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| CDS GCA 72 bp | TTCTTGGAATTTTCCATAAGGGATAACTGCATCTTTTaGACCTTCACAACTAGAAACGACTCAGCGACTTTT | + |
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Preference number: 6 (lower is better) Translates to: FLEFSIRDNCIF*TFTTRNDSATF Trigger: AAAAGTCGCTGAGTCGTTTCTAGTTGTGAAGGTGCAAAAGATGCAGTTATCCCTTATGGAAAATTCCAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000374014.3 |
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