Pregenerated sensors for LINC00471 (Homo sapiens)
Ensembl gene IDs: ENSG00000181798Ensembl transcript IDs: ENST00000313064.3, ENST00000668648.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCGCCCCTGCAAGCCACCGCGCGTGACGGACGCGGGCACGACGCCTaGGGACAGCCCGAAGAAAACCGCAGGCGCCGACACGCTGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: APLQATARDGRGHDA*GQPEENRRRRHAGD Trigger: GTCACCAGCGTGTCGGCGCCTGCGGTTTTCTTCGGGCTGTCCCCAGGCGTCGTGCCCGCGTCCGTCACGCGCGGTGGCTTGCAGGGGCGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 90 bp | TCCTCATCCTGGTCCAACTCACTGTTCCTGTCTTCATTCTCCTGGTaGCTCTCACGGTCCTTGAGCTTGGCTCCCCTCCTGCTTGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: SSSWSNSLFLSSFSW*LSRSLSLAPLLLGD Trigger: ATCACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAACAGTGAGTTGGACCAGGATGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 90 bp | TCTTCCTCATCCTGGTCCAACTCACTGTTCCTGTCTTCATTCTCCTaGTGGCTCTCACGGTCCTTGAGCTTGGCTCCCCTCCTGCTTGGT | + |
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Preference number: 5 (lower is better) Translates to: SSSSWSNSLFLSSFS*WLSRSLSLAPLLLG Trigger: ACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAACAGTGAGTTGGACCAGGATGAGGAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 90 bp | TGGGTCAGCGTCCATCACTACCCCCACCAGAATTCAGAACACACATaGGTCTATAACCCTCGCTGCCCACAGCAGCCCTTGTCCCTAACA | + |
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Preference number: 5 (lower is better) Translates to: WVSVHHYPHQNSEHT*VYNPRCPQQPLSLT Trigger: TGTTAGGGACAAGGGCTGCTGTGGGCAGCGAGGGTTATAGACTCATGTGTGTTCTGAATTCTGGTGGGGGTAGTGATGGACGCTGACCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 90 bp | ACTCACTGTTCCTGTCTTCATTCTCCTGGTGGCTCTCACGGTCCTTaGGCTTGGCTCCCCTCCTGCTTGGTGATATTAACTTCTCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: THCSCLHSPGGSHGP*AWLPSCLVILTSQQ Trigger: TTGCTGAGAAGTTAATATCACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAACAGTGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 90 bp | CAGGTAGAAAGCAAAAGTCAAACATCCACTGAGACTCCCCATCAATaGGGCCCATCCCGAAGAATCAGCCGGGAATTGCCAAGGCAGTTT | + |
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Preference number: 5 (lower is better) Translates to: QVESKSQTSTETPHQ*GPSRRISRELPRQF Trigger: AAACTGCCTTGGCAATTCCCGGCTGATTCTTCGGGATGGGCCTCATTGATGGGGAGTCTCAGTGGATGTTTGACTTTTGCTTTCTACCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 90 bp | CTCATCGGGAACCCCCTACAGAAGGATTCTTTATCTTCCTCATCCTaGTCCAACTCACTGTTCCTGTCTTCATTCTCCTGGTGGCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: LIGNPLQKDSLSSSS*SNSLFLSSFSWWLS Trigger: TGAGAGCCACCAGGAGAATGAAGACAGGAACAGTGAGTTGGACCAGGATGAGGAAGATAAAGAATCCTTCTGTAGGGGGTTCCCGATGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 90 bp | TTCCTGCAATTCAAGTACCTTTACTTCGCCAGTCAGATAATTCTGTaGACTGGGTCAGCGTCCATCACTACCCCCACCAGAATTCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: FLQFKYLYFASQIIL*TGSASITTPTRIQN Trigger: GTTCTGAATTCTGGTGGGGGTAGTGATGGACGCTGACCCAGTTCACAGAATTATCTGACTGGCGAAGTAAAGGTACTTGAATTGCAGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668648.1 |
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| CDS GCA 90 bp | GAGACTTTTCCTCCCCTTTCTTTCCCGGGACAGTGGTATTCTTCCTaGAATTCTTATGAGGGACAAGAACCTCATCTCTACTGCCATTGT | + |
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Preference number: 5 (lower is better) Translates to: ETFPPLSFPGQWYSS*NSYEGQEPHLYCHC Trigger: ACAATGGCAGTAGAGATGAGGTTCTTGTCCCTCATAAGAATTGCAGGAAGAATACCACTGTCCCGGGAAAGAAAGGGGAGGAAAAGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 90 bp | GCAATTCAAGTACCTTTACTTCGCCAGTCAGATAATTCTGTGAACTaGGTCAGCGTCCATCACTACCCCCACCAGAATTCAGAACACACA | + |
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Preference number: 5 (lower is better) Translates to: AIQVPLLRQSDNSVN*VSVHHYPHQNSEHT Trigger: TGTGTGTTCTGAATTCTGGTGGGGGTAGTGATGGACGCTGACCCAGTTCACAGAATTATCTGACTGGCGAAGTAAAGGTACTTGAATTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668648.1 |
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| CDS TCA 72 bp | AGGCTGTCGCGGTGCGCCCCTGCAAGCCACCGCGCGTaGCGGACGCGGGCACGACGCCTGGGGACAGCCCGA | + |
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Preference number: 6 (lower is better) Translates to: RLSRCAPASHRA*RTRARRLGTAR Trigger: TCGGGCTGTCCCCAGGCGTCGTGCCCGCGTCCGTCACGCGCGGTGGCTTGCAGGGGCGCACCGCGACAGCCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 72 bp | CAAGCCACCGCGCGTGACGGACGCGGGCACGACGCCTaGGGACAGCCCGAAGAAAACCGCAGGCGCCGACAC | + |
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Preference number: 6 (lower is better) Translates to: QATARDGRGHDA*GQPEENRRRRH Trigger: GTGTCGGCGCCTGCGGTTTTCTTCGGGCTGTCCCCAGGCGTCGTGCCCGCGTCCGTCACGCGCGGTGGCTTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS GCA 72 bp | AACAGGTTTTCCTTTAAGGCTGTCGCGGTGCGCCCCTaGAAGCCACCGCGCGTGACGGACGCGGGCACGACG | + |
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Preference number: 6 (lower is better) Translates to: NRFSFKAVAVRP*KPPRVTDAGTT Trigger: CGTCGTGCCCGCGTCCGTCACGCGCGGTGGCTTGCAGGGGCGCACCGCGACAGCCTTAAAGGAAAACCTGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 72 bp | ACAGCCCGAAGAAAACCGCAGGCGCCGACACGCTGGTaGCGCCCTCTCAGCTATTGCCCCAGATCCAAGGCG | + |
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Preference number: 6 (lower is better) Translates to: TARRKPQAPTRW*RPLSYCPRSKA Trigger: CGCCTTGGATCTGGGGCAATAGCTGAGAGGGCGTCACCAGCGTGTCGGCGCCTGCGGTTTTCTTCGGGCTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000668648.1 |
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| CDS CCA 72 bp | TGGTCCAACTCACTGTTCCTGTCTTCATTCTCCTGGTaGCTCTCACGGTCCTTGAGCTTGGCTCCCCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: WSNSLFLSSFSW*LSRSLSLAPLL Trigger: CAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAACAGTGAGTTGGACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 72 bp | TCCTGGTCCAACTCACTGTTCCTGTCTTCATTCTCCTaGTGGCTCTCACGGTCCTTGAGCTTGGCTCCCCTC | + |
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Preference number: 6 (lower is better) Translates to: SWSNSLFLSSFS*WLSRSLSLAPL Trigger: GAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAACAGTGAGTTGGACCAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 72 bp | GTCCATCACTACCCCCACCAGAATTCAGAACACACATaGGTCTATAACCCTCGCTGCCCACAGCAGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: VHHYPHQNSEHT*VYNPRCPQQPL Trigger: CAAGGGCTGCTGTGGGCAGCGAGGGTTATAGACTCATGTGTGTTCTGAATTCTGGTGGGGGTAGTGATGGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 72 bp | TCCTGTCTTCATTCTCCTGGTGGCTCTCACGGTCCTTaGGCTTGGCTCCCCTCCTGCTTGGTGATATTAACT | + |
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Preference number: 6 (lower is better) Translates to: SCLHSPGGSHGP*AWLPSCLVILT Trigger: AGTTAATATCACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CAA 72 bp | TTCCTGTCTTCATTCTCCTGGTGGCTCTCACGGTCCTaGAGCTTGGCTCCCCTCCTGCTTGGTGATATTAAC | + |
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Preference number: 6 (lower is better) Translates to: FLSSFSWWLSRS*SLAPLLLGDIN Trigger: GTTAATATCACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CAA 90 bp | CTGTTCCTGTCTTCATTCTCCTGGTGGCTCTCACGGTCCTTGAGCTaGGCTCCCCTCCTGCTTGGTGATATTAACTTCTCAGCAAACACA | + |
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Preference number: 6 (lower is better) Translates to: LFLSSFSWWLSRSLS*APLLLGDINFSANT Trigger: TGTGTTTGCTGAGAAGTTAATATCACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CAA 90 bp | AACTCACTGTTCCTGTCTTCATTCTCCTGGTGGCTCTCACGGTCCTaGAGCTTGGCTCCCCTCCTGCTTGGTGATATTAACTTCTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: NSLFLSSFSWWLSRS*SLAPLLLGDINFSA Trigger: TGCTGAGAAGTTAATATCACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGACAGGAACAGTGAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 72 bp | AGCAAAAGTCAAACATCCACTGAGACTCCCCATCAATaGGGCCCATCCCGAAGAATCAGCCGGGAATTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SKSQTSTETPHQ*GPSRRISRELP Trigger: TGGCAATTCCCGGCTGATTCTTCGGGATGGGCCTCATTGATGGGGAGTCTCAGTGGATGTTTGACTTTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CAA 72 bp | TCTTCATTCTCCTGGTGGCTCTCACGGTCCTTGAGCTaGGCTCCCCTCCTGCTTGGTGATATTAACTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: SSFSWWLSRSLS*APLLLGDINFS Trigger: TGAGAAGTTAATATCACCAAGCAGGAGGGGAGCCAAGCTCAAGGACCGTGAGAGCCACCAGGAGAATGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 72 bp | CTAGGGTCAGGTAGAAAGCAAAAGTCAAACATCCACTaGGACTCCCCATCAATGAGGCCCATCCCGAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: LGSGRKQKSNIH*DSPSMRPIPKN Trigger: ATTCTTCGGGATGGGCCTCATTGATGGGGAGTCTCAGTGGATGTTTGACTTTTGCTTTCTACCTGACCCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS TCA 72 bp | TTCAAGTACCTTTACTTCGCCAGTCAGATAATTCTGTaGACTGGGTCAGCGTCCATCACTACCCCCACCAGA | + |
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Preference number: 6 (lower is better) Translates to: FKYLYFASQIIL*TGSASITTPTR Trigger: TCTGGTGGGGGTAGTGATGGACGCTGACCCAGTTCACAGAATTATCTGACTGGCGAAGTAAAGGTACTTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668648.1 |
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| CDS GCA 72 bp | CCTCCCCTTTCTTTCCCGGGACAGTGGTATTCTTCCTaGAATTCTTATGAGGGACAAGAACCTCATCTCTAC | + |
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Preference number: 6 (lower is better) Translates to: PPLSFPGQWYSS*NSYEGQEPHLY Trigger: GTAGAGATGAGGTTCTTGTCCCTCATAAGAATTGCAGGAAGAATACCACTGTCCCGGGAAAGAAAGGGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 72 bp | GTACCTTTACTTCGCCAGTCAGATAATTCTGTGAACTaGGTCAGCGTCCATCACTACCCCCACCAGAATTCA | + |
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Preference number: 6 (lower is better) Translates to: VPLLRQSDNSVN*VSVHHYPHQNS Trigger: TGAATTCTGGTGGGGGTAGTGATGGACGCTGACCCAGTTCACAGAATTATCTGACTGGCGAAGTAAAGGTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000668648.1 |
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| CDS TCA 72 bp | TTTCCCGGGACAGTGGTATTCTTCCTGCAATTCTTATaGGGGACAAGAACCTCATCTCTACTGCCATTGTCC | + |
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Preference number: 6 (lower is better) Translates to: FPGTVVFFLQFL*GTRTSSLLPLS Trigger: GGACAATGGCAGTAGAGATGAGGTTCTTGTCCCTCATAAGAATTGCAGGAAGAATACCACTGTCCCGGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS GCA 72 bp | ATCAATGAGGCCCATCCCGAAGAATCAGCCGGGAATTaGCAAGGCAGTTTTCAGAGGGATGGATTTTTAACA | + |
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Preference number: 6 (lower is better) Translates to: INEAHPEESAGN*QGSFQRDGFLT Trigger: TGTTAAAAATCCATCCCTCTGAAAACTGCCTTGGCAATTCCCGGCTGATTCTTCGGGATGGGCCTCATTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 72 bp | TTTCCTTTACTTCGCCAGTCAGATAATTCTGTGAACTaGGTCAGCGTCCATCACTACCCCCACCAGAATTCA | + |
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Preference number: 6 (lower is better) Translates to: FPLLRQSDNSVN*VSVHHYPHQNS Trigger: TGAATTCTGGTGGGGGTAGTGATGGACGCTGACCCAGTTCACAGAATTATCTGACTGGCGAAGTAAAGGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000313064.3 |
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| CDS CCA 72 bp | CCAGAGACTTTTCCTCCCCTTTCTTTCCCGGGACAGTaGTATTCTTCCTGCAATTCTTATGAGGGACAAGAA | + |
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Preference number: 6 (lower is better) Translates to: PETFPPLSFPGQ*YSSCNSYEGQE Trigger: TTCTTGTCCCTCATAAGAATTGCAGGAAGAATACCACTGTCCCGGGAAAGAAAGGGGAGGAAAAGTCTCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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| CDS CCA 72 bp | AACCCCCTACAGAAGGATTCTTTATCTTCCTCATCCTaGTCCAACTCACTGTTCCTGTCTTCATTCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: NPLQKDSLSSSS*SNSLFLSSFSW Trigger: CCAGGAGAATGAAGACAGGAACAGTGAGTTGGACCAGGATGAGGAAGATAAAGAATCCTTCTGTAGGGGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000313064.3 ENST00000668648.1 |
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