Pregenerated sensors for LINC00448 (Homo sapiens)
Ensembl gene IDs: ENSG00000228669Ensembl transcript IDs: ENST00000438352.2, ENST00000448411.1, ENST00000656857.1, ENST00000657217.1, ENST00000658776.1, ENST00000667975.1, ENST00000671427.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GCTGCAACCTGGCTGGGCCCCTGGACCTCCACACAAACTGCCTACTaGGGACAGAACAGCATTGCTTTGGTAGAAATTTGGACATCTCTC | + |
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Preference number: 5 (lower is better) Translates to: AATWLGPWTSTQTAY*GQNSIALVEIWTSL Trigger: GAGAGATGTCCAAATTTCTACCAAAGCAATGCTGTTCTGTCCGCAGTAGGCAGTTTGTGTGGAGGTCCAGGGGCCCAGCCAGGTTGCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448411.1 |
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| CDS GCA 90 bp | ATCATCAGCTGCAACCTGGCTGGGCCCCTGGACCTCCACACAAACTaGCTACTGCGGACAGAACAGCATTGCTTTGGTAGAAATTTGGAC | + |
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Preference number: 5 (lower is better) Translates to: IISCNLAGPLDLHTN*LLRTEQHCFGRNLD Trigger: GTCCAAATTTCTACCAAAGCAATGCTGTTCTGTCCGCAGTAGGCAGTTTGTGTGGAGGTCCAGGGGCCCAGCCAGGTTGCAGCTGATGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448411.1 |
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| CDS GCA 90 bp | CCCCTGGACCTCCACACAAACTGCCTACTGCGGACAGAACAGCATTaGTTTGGTAGAAATTTGGACATCTCTCCATATTCCTTGATGTGG | + |
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Preference number: 5 (lower is better) Translates to: PLDLHTNCLLRTEQH*FGRNLDISPYSLMW Trigger: CCACATCAAGGAATATGGAGAGATGTCCAAATTTCTACCAAAGCAATGCTGTTCTGTCCGCAGTAGGCAGTTTGTGTGGAGGTCCAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448411.1 |
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| CDS CCA 90 bp | CTGATTATCCACATAGGAAAGGCATGGTTTTTAATTCCATCAGGCTaGGGAGGCCTCGCAATCATGGCTGAAGGTGAAAGGCATATCTTA | + |
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Preference number: 5 (lower is better) Translates to: LIIHIGKAWFLIPSG*GGLAIMAEGERHIL Trigger: TAAGATATGCCTTTCACCTTCAGCCATGATTGCGAGGCCTCCCCAGCCTGATGGAATTAAAAACCATGCCTTTCCTATGTGGATAATCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000438352.2 ENST00000656857.1 ENST00000657217.1 ENST00000658776.1 ENST00000667975.1 ENST00000671427.1 |
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| CDS TCA 90 bp | TGGCTGAAGGTGAAAGGCATATCTTACATGGTGGCAGGCTCATTTTaGATGCTCATCTGTCTTAGTCTTCTCATGAATCATAGATTCATA | + |
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Preference number: 5 (lower is better) Translates to: WLKVKGISYMVAGSF*MLICLSLLMNHRFI Trigger: TATGAATCTATGATTCATGAGAAGACTAAGACAGATGAGCATTCAAAATGAGCCTGCCACCATGTAAGATATGCCTTTCACCTTCAGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000667975.1 ENST00000671427.1 |
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| CDS GCA 72 bp | TGCAACCTGGCTGGGCCCCTGGACCTCCACACAAACTaGCTACTGCGGACAGAACAGCATTGCTTTGGTAGA | + |
|
Preference number: 6 (lower is better) Translates to: CNLAGPLDLHTN*LLRTEQHCFGR Trigger: TCTACCAAAGCAATGCTGTTCTGTCCGCAGTAGGCAGTTTGTGTGGAGGTCCAGGGGCCCAGCCAGGTTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448411.1 |
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| CDS GCA 72 bp | TGGCTGGGCCCCTGGACCTCCACACAAACTGCCTACTaGGGACAGAACAGCATTGCTTTGGTAGAAATTTGG | + |
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Preference number: 6 (lower is better) Translates to: WLGPWTSTQTAY*GQNSIALVEIW Trigger: CCAAATTTCTACCAAAGCAATGCTGTTCTGTCCGCAGTAGGCAGTTTGTGTGGAGGTCCAGGGGCCCAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000448411.1 |
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| CDS CCA 72 bp | CACATAGGAAAGGCATGGTTTTTAATTCCATCAGGCTaGGGAGGCCTCGCAATCATGGCTGAAGGTGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: HIGKAWFLIPSG*GGLAIMAEGER Trigger: CCTTTCACCTTCAGCCATGATTGCGAGGCCTCCCCAGCCTGATGGAATTAAAAACCATGCCTTTCCTATGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000438352.2 ENST00000656857.1 ENST00000657217.1 ENST00000658776.1 ENST00000667975.1 ENST00000671427.1 |
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| CDS CCA 72 bp | CATAGACTGCCATTTTCTCCCTGTATCCTCACATGGTaGAACTTGCAAGGGATCTCTCTGGGGTCTCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: HRLPFSPCILTW*NLQGISLGSLS Trigger: TGAAAGAGACCCCAGAGAGATCCCTTGCAAGTTCCACCATGTGAGGATACAGGGAGAAAATGGCAGTCTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000438352.2 ENST00000656857.1 |
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| CDS CCA 72 bp | TCCTCAGCTTTGCTGATTATCCACATAGGAAAGGCATaGTTTTTAATTCCATCAGGCTGGGGAGGCCTCGCA | + |
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Preference number: 6 (lower is better) Translates to: SSALLIIHIGKA*FLIPSGWGGLA Trigger: TGCGAGGCCTCCCCAGCCTGATGGAATTAAAAACCATGCCTTTCCTATGTGGATAATCAGCAAAGCTGAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENST00000438352.2 ENST00000656857.1 ENST00000657217.1 ENST00000658776.1 ENST00000667975.1 ENST00000671427.1 |
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| CDS GCA 72 bp | CTCCACACAAACTGCCTACTGCGGACAGAACAGCATTaGTTTGGTAGAAATTTGGACATCTCTCCATATTCC | + |
|
Preference number: 6 (lower is better) Translates to: LHTNCLLRTEQH*FGRNLDISPYS Trigger: GGAATATGGAGAGATGTCCAAATTTCTACCAAAGCAATGCTGTTCTGTCCGCAGTAGGCAGTTTGTGTGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000448411.1 |
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| CDS CAA 90 bp | AGCTGTAAACTGGCAATCCTGAGTTGCTTCCCGATGTCCTCAGCTTaGCTGATTATCCACATAGGAAAGGCATGGTTTTTAATTCCATCA | + |
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Preference number: 6 (lower is better) Translates to: SCKLAILSCFPMSSA*LIIHIGKAWFLIPS Trigger: TGATGGAATTAAAAACCATGCCTTTCCTATGTGGATAATCAGCAAAGCTGAGGACATCGGGAAGCAACTCAGGATTGCCAGTTTACAGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENST00000438352.2 ENST00000656857.1 ENST00000657217.1 ENST00000658776.1 ENST00000667975.1 ENST00000671427.1 |
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| CDS CAA 72 bp | GTGGCAGATTATCTTGCAGTTTTACCACCATATTCCTaGATGTGGCGATCTTCTGGATCCATCAAAGGAACA | + |
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Preference number: 6 (lower is better) Translates to: VADYLAVLPPYS*MWRSSGSIKGT Trigger: TGTTCCTTTGATGGATCCAGAAGATCGCCACATCAAGGAATATGGTGGTAAAACTGCAAGATAATCTGCCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000438352.2 ENST00000656857.1 ENST00000657217.1 ENST00000658776.1 ENST00000667975.1 ENST00000671427.1 |
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| CDS GCA 72 bp | AGAACTTCTATAGTTGTTAGGGGTGGCAGATTATCTTaGAGTTTTACCACCATATTCCTTGATGTGGCGATC | + |
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Preference number: 6 (lower is better) Translates to: RTSIVVRGGRLS*SFTTIFLDVAI Trigger: GATCGCCACATCAAGGAATATGGTGGTAAAACTGCAAGATAATCTGCCACCCCTAACAACTATAGAAGTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000438352.2 ENST00000656857.1 ENST00000657217.1 ENST00000658776.1 ENST00000667975.1 ENST00000671427.1 |
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| CDS TCA 72 bp | GTGAAAGGCATATCTTACATGGTGGCAGGCTCATTTTaGATGCTCATCTGTCTTAGTCTTCTCATGAATCAT | + |
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Preference number: 6 (lower is better) Translates to: VKGISYMVAGSF*MLICLSLLMNH Trigger: ATGATTCATGAGAAGACTAAGACAGATGAGCATTCAAAATGAGCCTGCCACCATGTAAGATATGCCTTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000667975.1 ENST00000671427.1 |
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