Pregenerated sensors for LINC00446 (Homo sapiens)

Ensembl gene IDs: ENSG00000229249

Ensembl transcript IDs: ENST00000414743.6, ENST00000438327.2, ENST00000652987.1, ENST00000658245.1, ENST00000659347.1, ENST00000661792.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GATTTGACACTGCAGATGCCTTGTGCTCCAATTAACAACTCTTCATaGATGTTGCAACTGCCTATATTACTTGGTATGGAAAAGATAAAA	+
Preference number: 5 (lower is better) Translates to: DLTLQMPCAPINNSS*MLQLPILLGMEKIK Trigger: TTTTATCTTTTCCATACCAAGTAATATAGGCAGTTGCAACATCCATGAAGAGTTGTTAATTGGAGCACAAGGCATCTGCAGTGTCAAATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000652987.1 ENST00000661792.1
CDS CAA 72 bp	GGTCATTTGTCTCCAGGTGCACTTGTCTCTGTAGATTaGACACTGCAGATGCCTTTCTCCTCTGTCCTTGTT	+
Preference number: 6 (lower is better) Translates to: GHLSPGALVSVD*TLQMPFSSVLV Trigger: AACAAGGACAGAGGAGAAAGGCATCTGCAGTGTCAAATCTACAGAGACAAGTGCACCTGGAGACAAATGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000414743.6 ENST00000658245.1 ENST00000659347.1
CDS CAA 72 bp	GGTCATTTGTCTCCAGGTGCACTTGTCTCTGTAGATTaGACACTGCAGATGCCTTGTGCTCCAATTAACAAC	+
Preference number: 6 (lower is better) Translates to: GHLSPGALVSVD*TLQMPCAPINN Trigger: GTTGTTAATTGGAGCACAAGGCATCTGCAGTGTCAAATCTACAGAGACAAGTGCACCTGGAGACAAATGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000438327.2 ENST00000652987.1 ENST00000661792.1
CDS CCA 72 bp	GCTTGCACTCAATGCAGGATCAGCATTCATTTTATTTaGAATGTCCTCTCTTCACTCTGCTTCTTCTGCCTG	+
Preference number: 6 (lower is better) Translates to: ACTQCRISIHFI*NVLSSLCFFCL Trigger: CAGGCAGAAGAAGCAGAGTGAAGAGAGGACATTCCAAATAAAATGAATGCTGATCCTGCATTGAGTGCAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000438327.2
CDS CAA 90 bp	GGTATAGGGTATGACACCTGTCACATAAGGACCCATTCATTTTATTaGGAATGTCCTCTCTTCACTCTGCTTCTTCTGCCTGGAAAAACA	+
Preference number: 6 (lower is better) Translates to: GIGYDTCHIRTHSFY*ECPLFTLLLLPGKT Trigger: TGTTTTTCCAGGCAGAAGAAGCAGAGTGAAGAGAGGACATTCCAAATAAAATGAATGGGTCCTTATGTGACAGGTGTCATACCCTATACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000659347.1 ENST00000661792.1
CDS CCA 72 bp	CTGCAGATGCCTTGTGCTCCAATTAACAACTCTTCATaGATGTTGCAACTGCCTATATTACTTGGTATGGAA	+
Preference number: 6 (lower is better) Translates to: LQMPCAPINNSS*MLQLPILLGME Trigger: TTCCATACCAAGTAATATAGGCAGTTGCAACATCCATGAAGAGTTGTTAATTGGAGCACAAGGCATCTGCAG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000438327.2 ENST00000652987.1 ENST00000661792.1
CDS CAA 72 bp	TATGACACCTGTCACATAAGGACCCATTCATTTTATTaGGAATGTCCTCTCTTCACTCTGCTTCTTCTGCCT	+
Preference number: 6 (lower is better) Translates to: YDTCHIRTHSFY*ECPLFTLLLLP Trigger: AGGCAGAAGAAGCAGAGTGAAGAGAGGACATTCCAAATAAAATGAATGGGTCCTTATGTGACAGGTGTCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000659347.1 ENST00000661792.1

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