Pregenerated sensors for LINC00445 (Homo sapiens)
Ensembl gene IDs: ENSG00000236036Ensembl transcript IDs: ENST00000422430.1, ENST00000456848.2, ENST00000655817.1, ENST00000656633.1, ENST00000670790.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGTGTCACCCTTTGGCTCTCTGAAATAATGAATCAGTGTGGACTTTaGAAAAGCAGCCGGGCCGAGGGTGCCGGATCGCCACGGTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: CVTLWLSEIMNQCGL*KSSRAEGAGSPRSK Trigger: CTTTGACCGTGGCGATCCGGCACCCTCGGCCCGGCTGCTTTTGCAAAGTCCACACTGATTCATTATTTCAGAGAGCCAAAGGGTGACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS GCA 90 bp | AATAATGAATCAGTGTGGACTTTGCAAAAGCAGCCGGGCCGAGGGTaGCGGATCGCCACGGTCAAAGACTGCAGAGCTGGAGAGAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: NNESVWTLQKQPGRG*RIATVKDCRAGEKK Trigger: TTTCTTCTCTCCAGCTCTGCAGTCTTTGACCGTGGCGATCCGGCACCCTCGGCCCGGCTGCTTTTGCAAAGTCCACACTGATTCATTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS TCA 90 bp | AAGGTCTCATCTGCTCGTCTGGTCGCTTGGCTATGCTGTGACACCTaGCACTGGCTGATGATCCGAGGCTTTACCAGCTTTAGAACACAC | + |
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Preference number: 5 (lower is better) Translates to: KVSSARLVAWLCCDT*HWLMIRGFTSFRTH Trigger: GTGTGTTCTAAAGCTGGTAAAGCCTCGGATCATCAGCCAGTGTCAGGTGTCACAGCATAGCCAAGCGACCAGACGAGCAGATGAGACCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456848.2 ENST00000656633.1 |
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| CDS CCA 90 bp | ACTGTGGAATTTGAAAACAGCAGGAGCACAAGAACAGAAGTTGCATaGATGTCTAGAGTTGTCATCTCTCGAATGCCCTCTGCGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: TVEFENSRSTRTEVA*MSRVVISRMPSAAK Trigger: CTTCGCCGCAGAGGGCATTCGAGAGATGACAACTCTAGACATCCATGCAACTTCTGTTCTTGTGCTCCTGCTGTTTTCAAATTCCACAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000422430.1 ENST00000456848.2 ENST00000655817.1 ENST00000656633.1 ENST00000670790.1 |
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| CDS CCA 90 bp | ACAGGGGATACATGTAAACAAAGGCTACATAAACAGAAAGATGCCTaGCAGCGAGGAGCAAGTATGCTTCTTGTCAGGCGGTTTTCCTTA | + |
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Preference number: 5 (lower is better) Translates to: TGDTCKQRLHKQKDA*QRGASMLLVRRFSL Trigger: TAAGGAAAACCGCCTGACAAGAAGCATACTTGCTCCTCGCTGCCAGGCATCTTTCTGTTTATGTAGCCTTTGTTTACATGTATCCCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS TCA 90 bp | TACAGGGTAATATTCAAAATATGCATGTGTCACCCTTTGGCTCTCTaGAATAATGAATCAGTGTGGACTTTGCAAAAGCAGCCGGGCCGA | + |
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Preference number: 5 (lower is better) Translates to: YRVIFKICMCHPLAL*NNESVWTLQKQPGR Trigger: TCGGCCCGGCTGCTTTTGCAAAGTCCACACTGATTCATTATTTCAGAGAGCCAAAGGGTGACACATGCATATTTTGAATATTACCCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS GCA 72 bp | TCAGTGTGGACTTTGCAAAAGCAGCCGGGCCGAGGGTaGCGGATCGCCACGGTCAAAGACTGCAGAGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SVWTLQKQPGRG*RIATVKDCRAG Trigger: TCCAGCTCTGCAGTCTTTGACCGTGGCGATCCGGCACCCTCGGCCCGGCTGCTTTTGCAAAGTCCACACTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS CAA 90 bp | ATCCGAGGCTTTACCAGCTTTAGAACACACCTATGTGTGAAAGCCTaGGGCTCTGAACCTGATCCACTCCCCGGGGGCCCTTCAAAGGGT | + |
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Preference number: 6 (lower is better) Translates to: IRGFTSFRTHLCVKA*GSEPDPLPGGPSKG Trigger: ACCCTTTGAAGGGCCCCCGGGGAGTGGATCAGGTTCAGAGCCCAAGGCTTTCACACATAGGTGTGTTCTAAAGCTGGTAAAGCCTCGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656633.1 |
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| CDS TCA 72 bp | TCTGCTCGTCTGGTCGCTTGGCTATGCTGTGACACCTaGCACTGGCTGATGATCCGAGGCTTTACCAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: SARLVAWLCCDT*HWLMIRGFTSF Trigger: AAAGCTGGTAAAGCCTCGGATCATCAGCCAGTGTCAGGTGTCACAGCATAGCCAAGCGACCAGACGAGCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456848.2 ENST00000656633.1 |
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| CDS GCA 72 bp | CTTTGGCTCTCTGAAATAATGAATCAGTGTGGACTTTaGAAAAGCAGCCGGGCCGAGGGTGCCGGATCGCCA | + |
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Preference number: 6 (lower is better) Translates to: LWLSEIMNQCGL*KSSRAEGAGSP Trigger: TGGCGATCCGGCACCCTCGGCCCGGCTGCTTTTGCAAAGTCCACACTGATTCATTATTTCAGAGAGCCAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS CCA 72 bp | CACCACTGGAGATTAACAAGGTCTCATCTGCTCGTCTaGTCGCTTGGCTATGCTGTGACACCTGACACTGGC | + |
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Preference number: 6 (lower is better) Translates to: HHWRLTRSHLLV*SLGYAVTPDTG Trigger: GCCAGTGTCAGGTGTCACAGCATAGCCAAGCGACCAGACGAGCAGATGAGACCTTGTTAATCTCCAGTGGTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000456848.2 ENST00000656633.1 |
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| CDS CAA 72 bp | TTTACCAGCTTTAGAACACACCTATGTGTGAAAGCCTaGGGCTCTGAACCTGATCCACTCCCCGGGGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: FTSFRTHLCVKA*GSEPDPLPGGP Trigger: AGGGCCCCCGGGGAGTGGATCAGGTTCAGAGCCCAAGGCTTTCACACATAGGTGTGTTCTAAAGCTGGTAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000656633.1 |
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| CDS TCA 72 bp | TCCGAGGCTTTACCAGCTTTAGAACACACCTATGTGTaGAAGCCTTGGGCTCTGAACCTGATCCACTCCCCG | + |
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Preference number: 6 (lower is better) Translates to: SEALPALEHTYV*KPWALNLIHSP Trigger: CGGGGAGTGGATCAGGTTCAGAGCCCAAGGCTTTCACACATAGGTGTGTTCTAAAGCTGGTAAAGCCTCGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000656633.1 |
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| CDS CAA 90 bp | AAAACAGCAGGAGCACAAGAACAGAAGTTGCATGGATGTCTAGAGTaGTCATCTCTCGAATGCCCTCTGCGGCGAAGATCCCTCCTAGCG | + |
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Preference number: 6 (lower is better) Translates to: KTAGAQEQKLHGCLE*SSLECPLRRRSLLA Trigger: CGCTAGGAGGGATCTTCGCCGCAGAGGGCATTCGAGAGATGACAACTCTAGACATCCATGCAACTTCTGTTCTTGTGCTCCTGCTGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000422430.1 ENST00000456848.2 ENST00000655817.1 ENST00000656633.1 ENST00000670790.1 |
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| CDS GCA 72 bp | ATTTCAGTACACGTGTTCTCATTTATCAAGGGGCGGTaGTCGGGTGTGAAGGGGGAGAATACCAAGGGTGAA | + |
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Preference number: 6 (lower is better) Translates to: ISVHVFSFIKGR*SGVKGENTKGE Trigger: TTCACCCTTGGTATTCTCCCCCTTCACACCCGAGCACCGCCCCTTGATAAATGAGAACACGTGTACTGAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENST00000456848.2 ENST00000655817.1 ENST00000656633.1 ENST00000670790.1 |
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| CDS GCA 72 bp | GAGAGCATGAGGACGATGAGTCTGGAGGGTGAAGTCTaGGATTTCAGTACACGTGTTCTCATTTATCAAGGG | + |
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Preference number: 6 (lower is better) Translates to: ESMRTMSLEGEV*DFSTRVLIYQG Trigger: CCCTTGATAAATGAGAACACGTGTACTGAAATCGCAGACTTCACCCTCCAGACTCATCGTCCTCATGCTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000456848.2 ENST00000655817.1 ENST00000656633.1 ENST00000670790.1 |
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| CDS TCA 72 bp | ACTTTGTTCTTCAGAGCAGTTCACTCTAGGGTGTCCTaGGTTTTCCAGGGTGCAGTCTGTGACTGTGGAATT | + |
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Preference number: 6 (lower is better) Translates to: TLFFRAVHSRVS*VFQGAVCDCGI Trigger: AATTCCACAGTCACAGACTGCACCCTGGAAAACTCAGGACACCCTAGAGTGAACTGCTCTGAAGAACAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENST00000422430.1 ENST00000456848.2 ENST00000655817.1 ENST00000656633.1 ENST00000670790.1 |
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| CDS CAA 90 bp | CGTCTCAGTCAAACCAAGGAGCTTCACGTTTACAGCACTGGGCATTaGTCACTGTGTGTTGTCATTAAGGAAAAAGGGGTTTGCTTGCAA | + |
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Preference number: 6 (lower is better) Translates to: RLSQTKELHVYSTGH*SLCVVIKEKGVCLQ Trigger: TTGCAAGCAAACCCCTTTTTCCTTAATGACAACACACAGTGACAAATGCCCAGTGCTGTAAACGTGAAGCTCCTTGGTTTGACTGAGACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS CAA 72 bp | TTCACGTTTACAGCACTGGGCATTTGTCACTGTGTGTaGTCATTAAGGAAAAAGGGGTTTGCTTGCAAAGGG | + |
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Preference number: 6 (lower is better) Translates to: FTFTALGICHCV*SLRKKGFACKG Trigger: CCCTTTGCAAGCAAACCCCTTTTTCCTTAATGACAACACACAGTGACAAATGCCCAGTGCTGTAAACGTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS CAA 72 bp | CAAACCAAGGAGCTTCACGTTTACAGCACTGGGCATTaGTCACTGTGTGTTGTCATTAAGGAAAAAGGGGTT | + |
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Preference number: 6 (lower is better) Translates to: QTKELHVYSTGH*SLCVVIKEKGV Trigger: AACCCCTTTTTCCTTAATGACAACACACAGTGACAAATGCCCAGTGCTGTAAACGTGAAGCTCCTTGGTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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| CDS TCA 72 bp | CTTAAAACAAAGCGTAAGGAAGTTTATAGGAGTTCTTaGGTAGGTGTTTTGGTTCAGGAAGATGTCCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LKTKRKEVYRSS*VGVLVQEDVLL Trigger: AAGCAGGACATCTTCCTGAACCAAAACACCTACTCAAGAACTCCTATAAACTTCCTTACGCTTTGTTTTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000670790.1 |
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