Pregenerated sensors for LINC00443 (Homo sapiens)
Ensembl gene IDs: ENSG00000230156Ensembl transcript IDs: ENST00000421601.2, ENST00000656762.1, ENST00000658356.1, ENST00000664222.1
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGAGCCAGGCTGCATGGGCCTCGCCTGCCCCACACCTCAGGCACTaGGCACGGAAACCATGCGCCATCCAGTGCAAGCAAAGGGAGCGC | + |
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Preference number: 5 (lower is better) Translates to: RSQAAWASPAPHLRH*ARKPCAIQCKQRER Trigger: GCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS GCA 90 bp | GAACAGCAACCTTCTGGAAAGGAGCCAGGCTGCATGGGCCTCGCCTaGCCCACACCTCAGGCACTGCGCACGGAAACCATGCGCCATCCA | + |
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Preference number: 5 (lower is better) Translates to: EQQPSGKEPGCMGLA*PTPQALRTETMRHP Trigger: TGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS GCA 90 bp | TGGGCCTCGCCTGCCCCACACCTCAGGCACTGCGCACGGAAACCATaGGCCATCCAGTGCAAGCAAAGGGAGCGCATGGTGTCAACAGAT | + |
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Preference number: 5 (lower is better) Translates to: WASPAPHLRHCARKP*AIQCKQRERMVSTD Trigger: ATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS GCA 90 bp | CACTCGAGCTGTAATGAACAGCAACCTTCTGGAAAGGAGCCAGGCTaGATGGGCCTCGCCTGCCCCACACCTCAGGCACTGCGCACGGAA | + |
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Preference number: 5 (lower is better) Translates to: HSSCNEQQPSGKEPG*MGLACPTPQALRTE Trigger: TTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTCATTACAGCTCGAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS CCA 90 bp | CGAGCTGTAATGAACAGCAACCTTCTGGAAAGGAGCCAGGCTGCATaGGCCTCGCCTGCCCCACACCTCAGGCACTGCGCACGGAAACCA | + |
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Preference number: 5 (lower is better) Translates to: RAVMNSNLLERSQAA*ASPAPHLRHCARKP Trigger: TGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTCATTACAGCTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS GCA 90 bp | GCCCCACACCTCAGGCACTGCGCACGGAAACCATGCGCCATCCAGTaGAAGCAAAGGGAGCGCATGGTGTCAACAGATATGCTTCACATT | + |
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Preference number: 5 (lower is better) Translates to: APHLRHCARKPCAIQ*KQRERMVSTDMLHI Trigger: AATGTGAAGCATATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS TCA 90 bp | ATCGCGTGGCCCTGTGGGCTGTCCGCTGTCTTCTTCCCTAGGCTGTaGGCATATGTGACAACTAAACTGCATTCTGCCCCACTTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: IAWPCGLSAVFFPRL*AYVTTKLHSAPLFW Trigger: CCAGAAAAGTGGGGCAGAATGCAGTTTAGTTGTCACATATGCTCACAGCCTAGGGAAGAAGACAGCGGACAGCCCACAGGGCCACGCGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS GCA 90 bp | AACAATAAGCCCTCCGGAGCATCGCTTCAAGCAGACACAGTCCACTaGAGACCACTCGACATGAAGCACAGAAGACTTCGGGACAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: NNKPSGASLQADTVH*RPLDMKHRRLRDRA Trigger: AGCCCTGTCCCGAAGTCTTCTGTGCTTCATGTCGAGTGGTCTGCAGTGGACTGTGTCTGCTTGAAGCGATGCTCCGGAGGGCTTATTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000658356.1 ENST00000664222.1 |
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| CDS CCA 90 bp | AAAACATGGCACAAACACTGGGAGATTCCTCCCTTTCACAGGCCCTaGCTGTTCACTCTGTTCTTGAACCATCGCGTGGCCCTGTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: KTWHKHWEIPPFHRP*LFTLFLNHRVALWA Trigger: AGCCCACAGGGCCACGCGATGGTTCAAGAACAGAGTGAACAGCCAGGGCCTGTGAAAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS TCA 90 bp | CCTGTGGGCTGTCCGCTGTCTTCTTCCCTAGGCTGTGAGCATATGTaGCAACTAAACTGCATTCTGCCCCACTTTTCTGGGATCCAGCGT | + |
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Preference number: 5 (lower is better) Translates to: PVGCPLSSSLGCEHM*QLNCILPHFSGIQR Trigger: ACGCTGGATCCCAGAAAAGTGGGGCAGAATGCAGTTTAGTTGTCACATATGCTCACAGCCTAGGGAAGAAGACAGCGGACAGCCCACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS CCA 90 bp | GCCCAGGCTTCGGCTATGTTTATGGCTTTCAGTCAGATCAAAACATaGCACAAACACTGGGAGATTCCTCCCTTTCACAGGCCCTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: AQASAMFMAFSQIKT*HKHWEIPPFHRPWL Trigger: CAGCCAGGGCCTGTGAAAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGAAGCCTGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS CCA 90 bp | GCGCACGGAAACCATGCGCCATCCAGTGCAAGCAAAGGGAGCGCATaGTGTCAACAGATATGCTTCACATTTCGTATGCTCGATTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: AHGNHAPSSASKGSA*CQQICFTFRMLDFS Trigger: AGAGAAATCGAGCATACGAAATGTGAAGCATATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS CCA 90 bp | GCCCAGGCTTCGGCTATGTTTATGGCTTTCAGTCAGATCAAAACATaGCACAAACACTGGGAGATTCCTCCCTCCTGTTGGGACTGTATT | + |
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Preference number: 5 (lower is better) Translates to: AQASAMFMAFSQIKT*HKHWEIPPSCWDCI Trigger: AATACAGTCCCAACAGGAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGAAGCCTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664222.1 |
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| CDS CCA 90 bp | GCTATGTTTATGGCTTTCAGTCAGATCAAAACATGGCACAAACACTaGGAGATTCCTCCCTTTCACAGGCCCTGGCTGTTCACTCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: AMFMAFSQIKTWHKH*EIPPFHRPWLFTLF Trigger: GAACAGAGTGAACAGCCAGGGCCTGTGAAAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS GCA 90 bp | GCGCCATCCAGTGCAAGCAAAGGGAGCGCATGGTGTCAACAGATATaGTTCACATTTCGTATGCTCGATTTCTCTCATTTTTCAGTGATC | + |
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Preference number: 5 (lower is better) Translates to: APSSASKGSAWCQQI*FTFRMLDFSHFSVI Trigger: GATCACTGAAAAATGAGAGAAATCGAGCATACGAAATGTGAAGCATATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS CCA 90 bp | GATGTAGCTCAGTCTAGAACTCTTCAGAGATACAAAATGCCCACTTaGAAAAAGAGAACATTGGGTCTTCTGTGGATGGCCCAGGCTTCG | + |
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Preference number: 5 (lower is better) Translates to: DVAQSRTLQRYKMPT*KKRTLGLLWMAQAS Trigger: CGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGGGCATTTTGTATCTCTGAAGAGTTCTAGACTGAGCTACATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000658356.1 ENST00000664222.1 |
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| CDS CCA 90 bp | ACAAAATGCCCACTTGGAAAAAGAGAACATTGGGTCTTCTGTGGATaGCCCAGGCTTCGGCTATGTTTATGGCTTTCAGTCAGATCAAAA | + |
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Preference number: 5 (lower is better) Translates to: TKCPLGKREHWVFCG*PRLRLCLWLSVRSK Trigger: TTTTGATCTGACTGAAAGCCATAAACATAGCCGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGGGCATTTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000658356.1 ENST00000664222.1 |
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| CDS GCA 90 bp | TTCACATTTCGTATGCTCGATTTCTCTCATTTTTCAGTGATCTCATaGTTTACCCCACACAACAATAAGCCCTCCGGAGCATCGCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: FTFRMLDFSHFSVIS*FTPHNNKPSGASLQ Trigger: TTGAAGCGATGCTCCGGAGGGCTTATTGTTGTGTGGGGTAAAGCATGAGATCACTGAAAAATGAGAGAAATCGAGCATACGAAATGTGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS TCA 90 bp | CCTCAAGTTGTCTTCATTTCAGACTCTGATACTCTCCAAACTACATaGTCACAAGCAAATTTCTTAACTGTTGAGATCTGCAATATCCTA | + |
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Preference number: 5 (lower is better) Translates to: PQVVFISDSDTLQTT*SQANFLTVEICNIL Trigger: TAGGATATTGCAGATCTCAACAGTTAAGAAATTTGCTTGTGATCATGTAGTTTGGAGAGTATCAGAGTCTGAAATGAAGACAACTTGAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656762.1 |
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| CDS GCA 72 bp | CCTTCTGGAAAGGAGCCAGGCTGCATGGGCCTCGCCTaGCCCACACCTCAGGCACTGCGCACGGAAACCATG | + |
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Preference number: 6 (lower is better) Translates to: PSGKEPGCMGLA*PTPQALRTETM Trigger: CATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS CAA 72 bp | CCTCCCTTTCACAGGCCCTGGCTGTTCACTCTGTTCTaGAACCATCGCGTGGCCCTGTGGGCTGTCCGCTGT | + |
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Preference number: 6 (lower is better) Translates to: PPFHRPWLFTLF*NHRVALWAVRC Trigger: ACAGCGGACAGCCCACAGGGCCACGCGATGGTTCAAGAACAGAGTGAACAGCCAGGGCCTGTGAAAGGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS GCA 72 bp | TGTAATGAACAGCAACCTTCTGGAAAGGAGCCAGGCTaGATGGGCCTCGCCTGCCCCACACCTCAGGCACTG | + |
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Preference number: 6 (lower is better) Translates to: CNEQQPSGKEPG*MGLACPTPQAL Trigger: CAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTCATTACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000664222.1 |
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| CDS CCA 72 bp | ACTCGACATGAAGCACAGAAGACTTCGGGACAGGGCTaGCCTGAAGCTTCGTGGTCCCTCCGCCTGATGCCA | + |
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Preference number: 6 (lower is better) Translates to: TRHEAQKTSGQG*PEASWSLRLMP Trigger: TGGCATCAGGCGGAGGGACCACGAAGCTTCAGGCCAGCCCTGTCCCGAAGTCTTCTGTGCTTCATGTCGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000656762.1 ENST00000658356.1 ENST00000664222.1 |
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| CDS CAA 90 bp | TGGGAGATTCCTCCCTTTCACAGGCCCTGGCTGTTCACTCTGTTCTaGAACCATCGCGTGGCCCTGTGGGCTGTCCGCTGTCTTCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: WEIPPFHRPWLFTLF*NHRVALWAVRCLLP Trigger: GGGAAGAAGACAGCGGACAGCCCACAGGGCCACGCGATGGTTCAAGAACAGAGTGAACAGCCAGGGCCTGTGAAAGGGAGGAATCTCCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS GCA 72 bp | CCCTCCGGAGCATCGCTTCAAGCAGACACAGTCCACTaGAGACCACTCGACATGAAGCACAGAAGACTTCGG | + |
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Preference number: 6 (lower is better) Translates to: PSGASLQADTVH*RPLDMKHRRLR Trigger: CCGAAGTCTTCTGTGCTTCATGTCGAGTGGTCTGCAGTGGACTGTGTCTGCTTGAAGCGATGCTCCGGAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000421601.2 ENST00000656762.1 ENST00000658356.1 ENST00000664222.1 |
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| CDS CCA 72 bp | ACTCGACATGAAGCACAGAAGACTTCGGGACAGGGCTaGCCTGAAGCTTCGTGGTCCTCTCAGGCATGCAGT | + |
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Preference number: 6 (lower is better) Translates to: TRHEAQKTSGQG*PEASWSSQACS Trigger: ACTGCATGCCTGAGAGGACCACGAAGCTTCAGGCCAGCCCTGTCCCGAAGTCTTCTGTGCTTCATGTCGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000421601.2 |
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| CDS CCA 72 bp | CACAAACACTGGGAGATTCCTCCCTTTCACAGGCCCTaGCTGTTCACTCTGTTCTTGAACCATCGCGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: HKHWEIPPFHRP*LFTLFLNHRVA Trigger: GGCCACGCGATGGTTCAAGAACAGAGTGAACAGCCAGGGCCTGTGAAAGGGAGGAATCTCCCAGTGTTTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS TCA 72 bp | CCCTGTGGGCTGTCCGCTGTCTTCTTCCCTAGGCTGTaGGCATATGTGACAACTAAACTGCATTCTGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: PCGLSAVFFPRL*AYVTTKLHSAP Trigger: TGGGGCAGAATGCAGTTTAGTTGTCACATATGCTCACAGCCTAGGGAAGAAGACAGCGGACAGCCCACAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS TCA 72 bp | TGTCCGCTGTCTTCTTCCCTAGGCTGTGAGCATATGTaGCAACTAAACTGCATTCTGCCCCACTTTTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: CPLSSSLGCEHM*QLNCILPHFSG Trigger: CCCAGAAAAGTGGGGCAGAATGCAGTTTAGTTGTCACATATGCTCACAGCCTAGGGAAGAAGACAGCGGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS CCA 72 bp | ATGGCTTTCAGTCAGATCAAAACATGGCACAAACACTaGGAGATTCCTCCCTTTCACAGGCCCTGGCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: MAFSQIKTWHKH*EIPPFHRPWLF Trigger: GAACAGCCAGGGCCTGTGAAAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS CCA 72 bp | CCACTTGGAAAAAGAGAACATTGGGTCTTCTGTGGATaGCCCAGGCTTCGGCTATGTTTATGGCTTTCAGTC | + |
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Preference number: 6 (lower is better) Translates to: PLGKREHWVFCG*PRLRLCLWLSV Trigger: GACTGAAAGCCATAAACATAGCCGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000658356.1 ENST00000664222.1 |
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| CDS CCA 72 bp | ATGCCCACTTGGAAAAAGAGAACATTGGGTCTTCTGTaGATGGCCCAGGCTTCGGCTATGTTTATGGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: MPTWKKRTLGLL*MAQASAMFMAF Trigger: GAAAGCCATAAACATAGCCGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGGGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000658356.1 ENST00000664222.1 |
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| CDS CCA 72 bp | ATGGCTTTCAGTCAGATCAAAACATGGCACAAACACTaGGAGATTCCTCCCTCCTGTTGGGACTGTATTTGG | + |
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Preference number: 6 (lower is better) Translates to: MAFSQIKTWHKH*EIPPSCWDCIW Trigger: CCAAATACAGTCCCAACAGGAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664222.1 |
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| CDS CCA 72 bp | TCGGCTATGTTTATGGCTTTCAGTCAGATCAAAACATaGCACAAACACTGGGAGATTCCTCCCTCCTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: SAMFMAFSQIKT*HKHWEIPPSCW Trigger: CCAACAGGAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000664222.1 |
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| CDS CCA 72 bp | TCGGCTATGTTTATGGCTTTCAGTCAGATCAAAACATaGCACAAACACTGGGAGATTCCTCCCTTTCACAGG | + |
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Preference number: 6 (lower is better) Translates to: SAMFMAFSQIKT*HKHWEIPPFHR Trigger: CCTGTGAAAGGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000658356.1 |
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| CDS CAA 90 bp | AGGCATGCAGTTATTTTCAGCTGCTTTGAATTTGCTTGGAGACATTaGGAGAGAGTGGTGAAATTGCACTACAGTAGAAGAATCAGGATC | + |
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Preference number: 6 (lower is better) Translates to: RHAVIFSCFEFAWRH*ERVVKLHYSRRIRI Trigger: GATCCTGATTCTTCTACTGTAGTGCAATTTCACCACTCTCTCCAAATGTCTCCAAGCAAATTCAAAGCAGCTGAAAATAACTGCATGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000658356.1 ENST00000664222.1 |
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| CDS CCA 72 bp | CTGATGAAGGGCTCCGTAATAGAAAAATGGCTTACTTaGCAGCTTGCTTGTGTTTGCATTATTACTATTAGC | + |
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Preference number: 6 (lower is better) Translates to: LMKGSVIEKWLT*QLACVCIITIS Trigger: GCTAATAGTAATAATGCAAACACAAGCAAGCTGCCAAGTAAGCCATTTTTCTATTACGGAGCCCTTCATCAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000421601.2 ENST00000664222.1 |
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| CDS CAA 72 bp | GTTATTTTCAGCTGCTTTGAATTTGCTTGGAGACATTaGGAGAGAGTGGTGAAATTGCACTACAGTAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: VIFSCFEFAWRH*ERVVKLHYSRR Trigger: TCTTCTACTGTAGTGCAATTTCACCACTCTCTCCAAATGTCTCCAAGCAAATTCAAAGCAGCTGAAAATAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000421601.2 ENST00000658356.1 ENST00000664222.1 |
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| CDS TCA 72 bp | GTCTTCATTTCAGACTCTGATACTCTCCAAACTACATaGTCACAAGCAAATTTCTTAACTGTTGAGATCTGC | + |
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Preference number: 6 (lower is better) Translates to: VFISDSDTLQTT*SQANFLTVEIC Trigger: GCAGATCTCAACAGTTAAGAAATTTGCTTGTGATCATGTAGTTTGGAGAGTATCAGAGTCTGAAATGAAGAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656762.1 |
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| CDS TCA 72 bp | CCAAACTACATGATCACAAGCAAATTTCTTAACTGTTaGGATCTGCAATATCCTATCTACTCATGTAAAGCA | + |
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Preference number: 6 (lower is better) Translates to: PNYMITSKFLNC*DLQYPIYSCKA Trigger: TGCTTTACATGAGTAGATAGGATATTGCAGATCTCAACAGTTAAGAAATTTGCTTGTGATCATGTAGTTTGG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000656762.1 |
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