Pregenerated sensors for LINC00442 (Homo sapiens)
Ensembl gene IDs: ENSG00000232685Ensembl transcript IDs: ENST00000428086.2, ENST00000456737.2, ENST00000659140.1, ENST00000670804.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTGCCTGTGCTTCTCAGCACCTGCCTGATCACTGGAACCGCCCCTaGACACCGCCCAGAAAGGACTCACAGCCAAGTGGCAGGCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: PACASQHLPDHWNRP*TPPRKDSQPSGRPG Trigger: TCCTGGCCTGCCACTTGGCTGTGAGTCCTTTCTGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428086.2 |
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| CDS CCA 90 bp | GCTGCCTGTGCTTCTCAGCACCTGCCTGATCACTGGAACCGCCCCTaGACACCGCCCAGAAAGGACTCACAGCCAAGTGGCAGGCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: AACASQHLPDHWNRP*TPPRKDSQPSGRPG Trigger: TCCTGGCCTGCCACTTGGCTGTGAGTCCTTTCTGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456737.2 ENST00000659140.1 |
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| CDS CCA 90 bp | ACTGCCTGTGCTTCTCAGCACCTGCCTGATCACTGGAACCGCCCCTaGACACCGCCCAGAAAGGACTCACAGCCAAGTGGCAGGCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: TACASQHLPDHWNRP*TPPRKDSQPSGRPG Trigger: TCCTGGCCTGCCACTTGGCTGTGAGTCCTTTCTGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000670804.1 |
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| CDS CCA 90 bp | GTCCCATTGTGGCCTCCATGCAGCTTGGTCCGATCAGGAGCACTCTaGGTGTTCTCTCGCTGCCTGCCTGCTCCTGGTCCTTCTGCCAAC | + |
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Preference number: 5 (lower is better) Translates to: VPLWPPCSLVRSGAL*VFSRCLPAPGPSAN Trigger: GTTGGCAGAAGGACCAGGAGCAGGCAGGCAGCGAGAGAACACCCAGAGTGCTCCTGATCGGACCAAGCTGCATGGAGGCCACAATGGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000428086.2 ENST00000456737.2 ENST00000659140.1 |
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| CDS TCA 90 bp | GCAAGTATCCCCTCATCCTGCTGCCTGTGCTTCTCAGCACCTGCCTaGTCACTGGAACCGCCCCTGGACACCGCCCAGAAAGGACTCACA | + |
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Preference number: 5 (lower is better) Translates to: ASIPSSCCLCFSAPA*SLEPPLDTAQKGLT Trigger: TGTGAGTCCTTTCTGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGCAGGATGAGGGGATACTTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456737.2 ENST00000659140.1 |
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| CDS GCA 90 bp | CCATGCAGCTTGGTCCGATCAGGAGCACTCTGGGTGTTCTCTCGCTaGCTGCCTGCTCCTGGTCCTTCTGCCAACTCTAGGCAATGGCAT | + |
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Preference number: 5 (lower is better) Translates to: PCSLVRSGALWVFSR*LPAPGPSANSRQWH Trigger: ATGCCATTGCCTAGAGTTGGCAGAAGGACCAGGAGCAGGCAGGCAGCGAGAGAACACCCAGAGTGCTCCTGATCGGACCAAGCTGCATGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000428086.2 ENST00000456737.2 ENST00000659140.1 |
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| CDS CCA 90 bp | GTGCTTAACTCACCTGCCTGTGCTTCTCAGCACCTGCCTGATCACTaGAACCGCCCCTGGACACCGCCCAGAAAGGACTCACAGCCAAGT | + |
|
Preference number: 5 (lower is better) Translates to: VLNSPACASQHLPDH*NRPWTPPRKDSQPS Trigger: ACTTGGCTGTGAGTCCTTTCTGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGGTGAGTTAAGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428086.2 |
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| CDS GCA 90 bp | ACCTTCTTCCAGTGCTTAACTCACCTGCCTGTGCTTCTCAGCACCTaGCTGATCACTGGAACCGCCCCTGGACACCGCCCAGAAAGGACT | + |
|
Preference number: 5 (lower is better) Translates to: TFFQCLTHLPVLLST*LITGTAPGHRPERT Trigger: AGTCCTTTCTGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGGTGAGTTAAGCACTGGAAGAAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000428086.2 |
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| CDS CCA 90 bp | GGCAGATGGAAGAAGAGGGAGGGATTCGCGGGCACGAGAGTGGGATaGCTTACGAGAGTGGGATGTGTTAGGAGGGCAGGATGGATTAGG | + |
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Preference number: 5 (lower is better) Translates to: GRWKKREGFAGTRVG*LTRVGCVRRAGWIR Trigger: CCTAATCCATCCTGCCCTCCTAACACATCCCACTCTCGTAAGCCATCCCACTCTCGTGCCCGCGAATCCCTCCCTCTTCTTCCATCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000428086.2 ENST00000456737.2 |
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| CDS GCA 90 bp | CCCTCCCACCTCTCAGGATCTTATTTCACACCCACCTTCTTCCAGTaGTTAACTCACCTGCCTGTGCTTCTCAGCACCTGCCTGATCACT | + |
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Preference number: 5 (lower is better) Translates to: PSHLSGSYFTPTFFQ*LTHLPVLLSTCLIT Trigger: AGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGGTGAGTTAAGCACTGGAAGAAGGTGGGTGTGAAATAAGATCCTGAGAGGTGGGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428086.2 |
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| CDS TCA 90 bp | CCTCCAAAGACATTGCTCCTAAAGTCTATAAAAGGAGGTAGGGTGTaGGAAGGTATCTTCTCCTTTAATGAGACGCACACTCCACCTTCC | + |
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Preference number: 5 (lower is better) Translates to: PPKTLLLKSIKGGRV*EGIFSFNETHTPPS Trigger: GGAAGGTGGAGTGTGCGTCTCATTAAAGGAGAAGATACCTTCTCACACCCTACCTCCTTTTATAGACTTTAGGAGCAATGTCTTTGGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456737.2 ENST00000659140.1 |
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| CDS GCA 72 bp | TATCCCCTCATCCTGCTGCCTGTGCTTCTCAGCACCTaGCTGATCACTGGAACCGCCCCTGGACACCGCCCA | + |
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Preference number: 6 (lower is better) Translates to: YPLILLPVLLST*LITGTAPGHRP Trigger: TGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGCACAGGCAGCAGGATGAGGGGATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000456737.2 ENST00000659140.1 |
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| CDS CCA 72 bp | GCTTCTCAGCACCTGCCTGATCACTGGAACCGCCCCTaGACACCGCCCAGAAAGGACTCACAGCCAAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: ASQHLPDHWNRP*TPPRKDSQPSG Trigger: GCCACTTGGCTGTGAGTCCTTTCTGGGCGGTGTCCAGGGGCGGTTCCAGTGATCAGGCAGGTGCTGAGAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000428086.2 ENST00000456737.2 ENST00000659140.1 ENST00000670804.1 |
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| CDS CCA 72 bp | TGGCCTCCATGCAGCTTGGTCCGATCAGGAGCACTCTaGGTGTTCTCTCGCTGCCTGCCTGCTCCTGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: WPPCSLVRSGAL*VFSRCLPAPGP Trigger: AGGACCAGGAGCAGGCAGGCAGCGAGAGAACACCCAGAGTGCTCCTGATCGGACCAAGCTGCATGGAGGCCA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000428086.2 ENST00000456737.2 ENST00000659140.1 |
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| CDS GCA 72 bp | TTGGTCCGATCAGGAGCACTCTGGGTGTTCTCTCGCTaGCTGCCTGCTCCTGGTCCTTCTGCCAACTCTAGG | + |
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Preference number: 6 (lower is better) Translates to: LVRSGALWVFSR*LPAPGPSANSR Trigger: CCTAGAGTTGGCAGAAGGACCAGGAGCAGGCAGGCAGCGAGAGAACACCCAGAGTGCTCCTGATCGGACCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000428086.2 ENST00000456737.2 ENST00000659140.1 |
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| CDS GCA 72 bp | CTGGTATTTCCTCCATCCTGCCAGGCCCCTCACCCTTaGAGAGGGCATTCATGTGATGCTGCATGTAGTGTT | + |
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Preference number: 6 (lower is better) Translates to: LVFPPSCQAPHP*RGHSCDAACSV Trigger: AACACTACATGCAGCATCACATGAATGCCCTCTGCAAGGGTGAGGGGCCTGGCAGGATGGAGGAAATACCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456737.2 ENST00000659140.1 |
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| CDS GCA 72 bp | ATCCCATGCTGTCTCCTGGCAAGTATCCCCTCATCCTaGTGGAGTAGATTTTGGTGTTGTCACCCATTCCCC | + |
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Preference number: 6 (lower is better) Translates to: IPCCLLASIPSS*WSRFWCCHPFP Trigger: GGGGAATGGGTGACAACACCAAAATCTACTCCAGCAGGATGAGGGGATACTTGCCAGGAGACAGCATGGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000428086.2 |
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| CDS GCA 72 bp | CTCTCAGGATCTTATTTCACACCCACCTTCTTCCAGTaGTTAACTCACCTGCCTGTGCTTCTCAGCACCTGC | + |
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Preference number: 6 (lower is better) Translates to: LSGSYFTPTFFQ*LTHLPVLLSTC Trigger: GCAGGTGCTGAGAAGCACAGGCAGGTGAGTTAAGCACTGGAAGAAGGTGGGTGTGAAATAAGATCCTGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000428086.2 |
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| CDS CAA 90 bp | GTGATCGATAAGGGAGTTACCAGAAAGAGTTCTGGGACTAGAGCATaGACAAATGGATGGTTTGTAATGAATAGCAGAAGAGCAGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VIDKGVTRKSSGTRA*TNGWFVMNSRRAVQ Trigger: CTGCACTGCTCTTCTGCTATTCATTACAAACCATCCATTTGTCAATGCTCTAGTCCCAGAACTCTTTCTGGTAACTCCCTTATCGATCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000428086.2 ENST00000456737.2 ENST00000670804.1 |
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| CDS TCA 72 bp | ACATTGCTCCTAAAGTCTATAAAAGGAGGTAGGGTGTaGGAAGGTATCTTCTCCTTTAATGAGACGCACACT | + |
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Preference number: 6 (lower is better) Translates to: TLLLKSIKGGRV*EGIFSFNETHT Trigger: AGTGTGCGTCTCATTAAAGGAGAAGATACCTTCTCACACCCTACCTCCTTTTATAGACTTTAGGAGCAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000456737.2 ENST00000659140.1 |
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