Pregenerated sensors for LINC00424 (Homo sapiens)
Ensembl gene IDs: ENSG00000226722Ensembl transcript IDs: ENST00000413124.3, ENST00000624644.1, ENST00000653691.1, ENST00000654346.1, ENST00000663265.1, ENST00000669854.1
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTTGAGCCCAGGTTGAAGCCCGCCGTAAGGACAGTGGGCAAGGGCTaGCCACGCCCTTCTGCTAAGGAAGAGCACAGGCCCACTGTACAT | + |
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Preference number: 5 (lower is better) Translates to: VEPRLKPAVRTVGKG*PRPSAKEEHRPTVH Trigger: ATGTACAGTGGGCCTGTGCTCTTCCTTAGCAGAAGGGCGTGGCCAGCCCTTGCCCACTGTCCTTACGGCGGGCTTCAACCTGGGCTCAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS TCA 90 bp | TTGGCTCTCTCATCTCTCAACCCTGAAGGAGCTCCTTGGCAGCACTaGCGCAGAGCAGCGAGCTCTTGTGAGGTGCACTGGCAAGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: LALSSLNPEGAPWQH*RRAASSCEVHWQAP Trigger: AGGGGCTTGCCAGTGCACCTCACAAGAGCTCGCTGCTCTGCGTCAGTGCTGCCAAGGAGCTCCTTCAGGGTTGAGAGATGAGAGAGCCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000413124.3 ENST00000669854.1 |
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| CDS GCA 90 bp | GATAGCAGGGCCAGGATTCACCCGGGTTGCAGCCTCATCCAAAGCTaGAGGGTGCTGCAAGTAAAATGTGTCCCTGCCTCAGAACCGGGG | + |
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Preference number: 5 (lower is better) Translates to: DSRARIHPGCSLIQS*RVLQVKCVPASEPG Trigger: CCCCGGTTCTGAGGCAGGGACACATTTTACTTGCAGCACCCTGCAGCTTTGGATGAGGCTGCAACCCGGGTGAATCCTGGCCCTGCTATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000413124.3 ENST00000624644.1 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS GCA 90 bp | TGCAGTGGCTGCCCACGTGATAGCAGGGCCAGGATTCACCCGGGTTaGAGCCTCATCCAAAGCTGCAGGGTGCTGCAAGTAAAATGTGTC | + |
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Preference number: 5 (lower is better) Translates to: CSGCPRDSRARIHPG*SLIQSCRVLQVKCV Trigger: GACACATTTTACTTGCAGCACCCTGCAGCTTTGGATGAGGCTGCAACCCGGGTGAATCCTGGCCCTGCTATCACGTGGGCAGCCACTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000413124.3 ENST00000624644.1 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS TCA 90 bp | CTCAGATCTAGTAATCACGGACTTGGCTCTCTCATCTCTCAACCCTaGAGGAGCTCCTTGGCAGCACTGACGCAGAGCAGCGAGCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: LRSSNHGLGSLISQP*RSSLAALTQSSELL Trigger: CAAGAGCTCGCTGCTCTGCGTCAGTGCTGCCAAGGAGCTCCTTCAGGGTTGAGAGATGAGAGAGCCAAGTCCGTGATTACTAGATCTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413124.3 ENST00000669854.1 |
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| CDS CCA 90 bp | GAGATTTTGAAACACAGGCACTGGTACAGGATTGGGCAAGGCAGATaGCACAGATCTTACTCCAGACCTCCCAGCATGGTGACTCCCATC | + |
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Preference number: 5 (lower is better) Translates to: EILKHRHWYRIGQGR*HRSYSRPPSMVTPI Trigger: GATGGGAGTCACCATGCTGGGAGGTCTGGAGTAAGATCTGTGCCATCTGCCTTGCCCAATCCTGTACCAGTGCCTGTGTTTCAAAATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000413124.3 ENST00000624644.1 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS CCA 90 bp | ACTCCACATTGCGAAAAAGGACCCAAACCGGTTACCACTGCTGGCTaGGGTGGCCAGCTTTTATTCCCTTATTTGTCCCTGCCCATGTTC | + |
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Preference number: 5 (lower is better) Translates to: TPHCEKGPKPVTTAG*GGQLLFPYLSLPMF Trigger: GAACATGGGCAGGGACAAATAAGGGAATAAAAGCTGGCCACCCCAGCCAGCAGTGGTAACCGGTTTGGGTCCTTTTTCGCAATGTGGAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000653691.1 ENST00000663265.1 |
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| CDS TCA 90 bp | TGGTGTGTCTGGGGTTGGTTCCTACCAGTACTCTGGCTGACTTCATaGTTCTCACTGACTTCATCAATGAAGCCACGGACCTTCACGGTG | + |
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Preference number: 5 (lower is better) Translates to: WCVWGWFLPVLWLTS*FSLTSSMKPRTFTV Trigger: CACCGTGAAGGTCCGTGGCTTCATTGATGAAGTCAGTGAGAATCATGAAGTCAGCCAGAGTACTGGTAGGAACCAACCCCAGACACACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654346.1 |
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| CDS TCA 90 bp | CCTGAGTCACTTCACCTGAGGTTTGAGAGTCAGCTGACTTCATCTTaGCTTCAGTTTCAACAAAACATTTGCTCTCAGTCTTGTGGAATT | + |
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Preference number: 5 (lower is better) Translates to: PESLHLRFESQLTSS*LQFQQNICSQSCGI Trigger: AATTCCACAAGACTGAGAGCAAATGTTTTGTTGAAACTGAAGTCAAGATGAAGTCAGCTGACTCTCAAACCTCAGGTGAAGTGACTCAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000413124.3 ENST00000624644.1 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS CCA 90 bp | CTCAGTGACTGCTCACTCATTTTTCAGGGTGATGTCGTGATGGGTTaGAAACAGTTTTTAGGTTCTATTGTAGAACGATATTCTGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: LSDCSLIFQGDVVMG*KQFLGSIVERYSEF Trigger: GAACTCAGAATATCGTTCTACAATAGAACCTAAAAACTGTTTCCAACCCATCACGACATCACCCTGAAAAATGAGTGAGCAGTCACTGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENST00000413124.3 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS CCA 90 bp | CTCAGTGACTGCTCACTCATTTTTCAGGGTGATGTCGTGATGGGTTaGAAACAGTTTTTAGGTTCTATTGTAGAACTCAGATCTAGTAAT | + |
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Preference number: 5 (lower is better) Translates to: LSDCSLIFQGDVVMG*KQFLGSIVELRSSN Trigger: ATTACTAGATCTGAGTTCTACAATAGAACCTAAAAACTGTTTCCAACCCATCACGACATCACCCTGAAAAATGAGTGAGCAGTCACTGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000624644.1 |
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| CDS CCA 72 bp | AGGTTGAAGCCCGCCGTAAGGACAGTGGGCAAGGGCTaGCCACGCCCTTCTGCTAAGGAAGAGCACAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: RLKPAVRTVGKG*PRPSAKEEHRP Trigger: GGGCCTGTGCTCTTCCTTAGCAGAAGGGCGTGGCCAGCCCTTGCCCACTGTCCTTACGGCGGGCTTCAACCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS CAA 90 bp | CACGCCCTTCTGCTAAGGAAGAGCACAGGCCCACTGTACATGAGCTaGGCCTGCAGGAGCCCCTCTGAGGCTGCTGGGTTTTCCTATGCG | + |
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Preference number: 6 (lower is better) Translates to: HALLLRKSTGPLYMS*ACRSPSEAAGFSYA Trigger: CGCATAGGAAAACCCAGCAGCCTCAGAGGGGCTCCTGCAGGCCAAGCTCATGTACAGTGGGCCTGTGCTCTTCCTTAGCAGAAGGGCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS CAA 72 bp | CTGCTAAGGAAGAGCACAGGCCCACTGTACATGAGCTaGGCCTGCAGGAGCCCCTCTGAGGCTGCTGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: LLRKSTGPLYMS*ACRSPSEAAGF Trigger: AAACCCAGCAGCCTCAGAGGGGCTCCTGCAGGCCAAGCTCATGTACAGTGGGCCTGTGCTCTTCCTTAGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS TCA 72 bp | TCATCTCTCAACCCTGAAGGAGCTCCTTGGCAGCACTaGCGCAGAGCAGCGAGCTCTTGTGAGGTGCACTGG | + |
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Preference number: 6 (lower is better) Translates to: SSLNPEGAPWQH*RRAASSCEVHW Trigger: CCAGTGCACCTCACAAGAGCTCGCTGCTCTGCGTCAGTGCTGCCAAGGAGCTCCTTCAGGGTTGAGAGATGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000413124.3 ENST00000669854.1 |
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| CDS GCA 72 bp | CCAAAGCTGCAGGGTGCTGCAAGTAAAATGTGTCCCTaGCTCAGAACCGGGGTGTGGGCCCTGAGTCACTTC | + |
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Preference number: 6 (lower is better) Translates to: PKLQGAASKMCP*LRTGVWALSHF Trigger: GAAGTGACTCAGGGCCCACACCCCGGTTCTGAGGCAGGGACACATTTTACTTGCAGCACCCTGCAGCTTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 6 transcripts: ENST00000413124.3 ENST00000624644.1 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS GCA 72 bp | GCCAGGATTCACCCGGGTTGCAGCCTCATCCAAAGCTaGAGGGTGCTGCAAGTAAAATGTGTCCCTGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: ARIHPGCSLIQS*RVLQVKCVPAS Trigger: TGAGGCAGGGACACATTTTACTTGCAGCACCCTGCAGCTTTGGATGAGGCTGCAACCCGGGTGAATCCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000413124.3 ENST00000624644.1 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS CCA 72 bp | AAACACAGGCACTGGTACAGGATTGGGCAAGGCAGATaGCACAGATCTTACTCCAGACCTCCCAGCATGGTG | + |
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Preference number: 6 (lower is better) Translates to: KHRHWYRIGQGR*HRSYSRPPSMV Trigger: CACCATGCTGGGAGGTCTGGAGTAAGATCTGTGCCATCTGCCTTGCCCAATCCTGTACCAGTGCCTGTGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000413124.3 ENST00000624644.1 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS CCA 72 bp | TCCAACTGCCTCAGCCTACCAAAGTGCTGGTGTGTCTaGGGTTGGTTCCTACCAGTACTCTGGCTGACTTCA | + |
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Preference number: 6 (lower is better) Translates to: SNCLSLPKCWCV*GWFLPVLWLTS Trigger: TGAAGTCAGCCAGAGTACTGGTAGGAACCAACCCCAGACACACCAGCACTTTGGTAGGCTGAGGCAGTTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000654346.1 |
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| CDS CAA 72 bp | CACGTGCTTTGTGGTCAGCACTCTGTTGCCCCTGGGTaGAGTGAGAATGGGACGTGTCTGATGACCATGATC | + |
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Preference number: 6 (lower is better) Translates to: HVLCGQHSVAPG*SENGTCLMTMI Trigger: GATCATGGTCATCAGACACGTCCCATTCTCACTCAACCCAGGGGCAACAGAGTGCTGACCACAAAGCACGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS CAA 72 bp | GCCAGCTCCGGACTCTCAGATCTAGTAATCACGGACTaGGCTCTCTCATCTCTCAACCCTGAAGGAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: ASSGLSDLVITD*ALSSLNPEGAP Trigger: AGGAGCTCCTTCAGGGTTGAGAGATGAGAGAGCCAAGTCCGTGATTACTAGATCTGAGAGTCCGGAGCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000669854.1 |
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| CDS TCA 72 bp | GCTTTGTGGTCAGCACTCTGTTGCCCCTGGGTTGAGTaGGAATGGGACGTGTCTGATGACCATGATCTGACT | + |
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Preference number: 6 (lower is better) Translates to: ALWSALCCPWVE*EWDVSDDHDLT Trigger: AGTCAGATCATGGTCATCAGACACGTCCCATTCTCACTCAACCCAGGGGCAACAGAGTGCTGACCACAAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS TCA 72 bp | CTGCAGTGGTGTCCCCTGACCCTTGCTGGGCTTTTCTaGACCTCACAGGATATCCCATTTCTTCTAGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: LQWCPLTLAGLF*TSQDIPFLLVP Trigger: AGGGACTAGAAGAAATGGGATATCCTGTGAGGTTCAGAAAAGCCCAGCAAGGGTCAGGGGACACCACTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS CCA 72 bp | TGCGAAAAAGGACCCAAACCGGTTACCACTGCTGGCTaGGGTGGCCAGCTTTTATTCCCTTATTTGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: CEKGPKPVTTAG*GGQLLFPYLSL Trigger: CAGGGACAAATAAGGGAATAAAAGCTGGCCACCCCAGCCAGCAGTGGTAACCGGTTTGGGTCCTTTTTCGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 |
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| CDS CAA 72 bp | GATTCCCTCCAGGGCTCAGATCTAGTAATCACGGACTaGGCTCTCTCATCTCTCAACCCTGAAGGAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: DSLQGSDLVITD*ALSSLNPEGAP Trigger: AGGAGCTCCTTCAGGGTTGAGAGATGAGAGAGCCAAGTCCGTGATTACTAGATCTGAGCCCTGGAGGGAATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000413124.3 |
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| CDS CAA 72 bp | CTGCCTCAGCCTACCAAAGTGCTGGTGTGTCTGGGGTaGGTTCCTACCAGTACTCTGGCTGACTTCATGATT | + |
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Preference number: 6 (lower is better) Translates to: LPQPTKVLVCLG*VPTSTLADFMI Trigger: AATCATGAAGTCAGCCAGAGTACTGGTAGGAACCAACCCCAGACACACCAGCACTTTGGTAGGCTGAGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000654346.1 |
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| CDS CCA 72 bp | ATTCTGGAGTCTGAACTGGACAATGACTCCTTAAACTaGCAGTCGATTCCCTCCAGGGCAGTACTCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ILESELDNDSLN*QSIPSRAVLWL Trigger: CAGCCAGAGTACTGCCCTGGAGGGAATCGACTGCCAGTTTAAGGAGTCATTGTCCAGTTCAGACTCCAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000663265.1 |
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| CDS GCA 72 bp | GACAATGATTCTTCTGCAGTGGTGTCCCCTGACCCTTaGTGGGCTTTTCTGAACCTCACAGGATATCCCATT | + |
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Preference number: 6 (lower is better) Translates to: DNDSSAVVSPDP*WAFLNLTGYPI Trigger: AATGGGATATCCTGTGAGGTTCAGAAAAGCCCAGCAAGGGTCAGGGGACACCACTGCAGAAGAATCATTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000653691.1 ENST00000654346.1 ENST00000669854.1 |
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| CDS CAA 90 bp | TCCCCCTTGAACGCAGTGCCAGGATTTAAGATGATTCTTTACAAGTaGCAATTTATACTTGGTCATTTCCTGTCAGTTTCTACGTTTCGT | + |
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Preference number: 6 (lower is better) Translates to: SPLNAVPGFKMILYK*QFILGHFLSVSTFR Trigger: ACGAAACGTAGAAACTGACAGGAAATGACCAAGTATAAATTGCAACTTGTAAAGAATCATCTTAAATCCTGGCACTGCGTTCAAGGGGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000413124.3 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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| CDS CCA 72 bp | TGCTCACTCATTTTTCAGGGTGATGTCGTGATGGGTTaGAAACAGTTTTTAGGTTCTATTGTAGAACTCAGA | + |
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Preference number: 6 (lower is better) Translates to: CSLIFQGDVVMG*KQFLGSIVELR Trigger: TCTGAGTTCTACAATAGAACCTAAAAACTGTTTCCAACCCATCACGACATCACCCTGAAAAATGAGTGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000624644.1 |
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| CDS CCA 72 bp | TGCTCACTCATTTTTCAGGGTGATGTCGTGATGGGTTaGAAACAGTTTTTAGGTTCTATTGTAGAACGATAT | + |
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Preference number: 6 (lower is better) Translates to: CSLIFQGDVVMG*KQFLGSIVERY Trigger: ATATCGTTCTACAATAGAACCTAAAAACTGTTTCCAACCCATCACGACATCACCCTGAAAAATGAGTGAGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 5 transcripts: ENST00000413124.3 ENST00000653691.1 ENST00000654346.1 ENST00000663265.1 ENST00000669854.1 |
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