Pregenerated sensors for LINC00415 (Homo sapiens)
Ensembl gene IDs: ENSG00000231983Ensembl transcript IDs: ENST00000439079.1
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ATCGCCACTCAGATGAACTCTCTCGGCTTCCAGCAGCTGATGTCCTaGCCACGGTTGGTCCCAGGCCCTGTGCAGGAAGAGCACCGATGT | + |
|
Preference number: 5 (lower is better) Translates to: IATQMNSLGFQQLMS*PRLVPGPVQEEHRC Trigger: ACATCGGTGCTCTTCCTGCACAGGGCCTGGGACCAACCGTGGCCAGGACATCAGCTGCTGGAAGCCGAGAGAGTTCATCTGAGTGGCGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CCA 90 bp | ATGTTTGTGGCAGGGTTCACACGCCTAGGGCTGTGTTTGGTGGACTaGAGGCCTCCACCACAAGGTGGAACGGAGAGAGTTCAGCAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: MFVAGFTRLGLCLVD*RPPPQGGTERVQQR Trigger: TCTTTGCTGAACTCTCTCCGTTCCACCTTGTGGTGGAGGCCTCCAGTCCACCAAACACAGCCCTAGGCGTGTGAACCCTGCCACAAACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS TCA 90 bp | GTGTGGATGATCTGTGTCCCTTTTTCTTTCTATATTTGGGTGTGGTaGTTTATCGGATTCCAGCAGGAAAGTGCCTCCGTCCAACATGTG | + |
|
Preference number: 5 (lower is better) Translates to: VWMICVPFSFYIWVW*FIGFQQESASVQHV Trigger: CACATGTTGGACGGAGGCACTTTCCTGCTGGAATCCGATAAATCACCACACCCAAATATAGAAAGAAAAAGGGACACAGATCATCCACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS GCA 90 bp | TTTCTATATTTGGGTGTGGTGATTTATCGGATTCCAGCAGGAAAGTaGCTCCGTCCAACATGTGGCCTTAGTGGTTTAGACAGAGTGTAC | + |
|
Preference number: 5 (lower is better) Translates to: FLYLGVVIYRIPAGK*LRPTCGLSGLDRVY Trigger: GTACACTCTGTCTAAACCACTAAGGCCACATGTTGGACGGAGGCACTTTCCTGCTGGAATCCGATAAATCACCACACCCAAATATAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS TCA 90 bp | GGAGAGAGTTCAGCAAAGATGTCACACATTCGGCCACGGTGTGGATaGTCTGTGTCCCTTTTTCTTTCTATATTTGGGTGTGGTGATTTA | + |
|
Preference number: 5 (lower is better) Translates to: GESSAKMSHIRPRCG*SVSLFLSIFGCGDL Trigger: TAAATCACCACACCCAAATATAGAAAGAAAAAGGGACACAGATCATCCACACCGTGGCCGAATGTGTGACATCTTTGCTGAACTCTCTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CAA 72 bp | TCTCTCGGCTTCCAGCAGCTGATGTCCTGGCCACGGTaGGTCCCAGGCCCTGTGCAGGAAGAGCACCGATGT | + |
|
Preference number: 6 (lower is better) Translates to: SLGFQQLMSWPR*VPGPVQEEHRC Trigger: ACATCGGTGCTCTTCCTGCACAGGGCCTGGGACCAACCGTGGCCAGGACATCAGCTGCTGGAAGCCGAGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CCA 72 bp | CAGATGAACTCTCTCGGCTTCCAGCAGCTGATGTCCTaGCCACGGTTGGTCCCAGGCCCTGTGCAGGAAGAG | + |
|
Preference number: 6 (lower is better) Translates to: QMNSLGFQQLMS*PRLVPGPVQEE Trigger: CTCTTCCTGCACAGGGCCTGGGACCAACCGTGGCCAGGACATCAGCTGCTGGAAGCCGAGAGAGTTCATCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CAA 90 bp | CAGATGAACTCTCTCGGCTTCCAGCAGCTGATGTCCTGGCCACGGTaGGTCCCAGGCCCTGTGCAGGAAGAGCACCGATGTTTGTGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: QMNSLGFQQLMSWPR*VPGPVQEEHRCLWQ Trigger: CTGCCACAAACATCGGTGCTCTTCCTGCACAGGGCCTGGGACCAACCGTGGCCAGGACATCAGCTGCTGGAAGCCGAGAGAGTTCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CCA 72 bp | GCAGGGTTCACACGCCTAGGGCTGTGTTTGGTGGACTaGAGGCCTCCACCACAAGGTGGAACGGAGAGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: AGFTRLGLCLVD*RPPPQGGTERV Trigger: AACTCTCTCCGTTCCACCTTGTGGTGGAGGCCTCCAGTCCACCAAACACAGCCCTAGGCGTGTGAACCCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CAA 90 bp | AGAGCACCGATGTTTGTGGCAGGGTTCACACGCCTAGGGCTGTGTTaGGTGGACTGGAGGCCTCCACCACAAGGTGGAACGGAGAGAGTT | + |
|
Preference number: 6 (lower is better) Translates to: RAPMFVAGFTRLGLC*VDWRPPPQGGTERV Trigger: AACTCTCTCCGTTCCACCTTGTGGTGGAGGCCTCCAGTCCACCAAACACAGCCCTAGGCGTGTGAACCCTGCCACAAACATCGGTGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CAA 72 bp | ATGTTTGTGGCAGGGTTCACACGCCTAGGGCTGTGTTaGGTGGACTGGAGGCCTCCACCACAAGGTGGAACG | + |
|
Preference number: 6 (lower is better) Translates to: MFVAGFTRLGLC*VDWRPPPQGGT Trigger: CGTTCCACCTTGTGGTGGAGGCCTCCAGTCCACCAAACACAGCCCTAGGCGTGTGAACCCTGCCACAAACAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CCA 72 bp | GCTGTGTTTGGTGGACTGGAGGCCTCCACCACAAGGTaGAACGGAGAGAGTTCAGCAAAGATGTCACACATT | + |
|
Preference number: 6 (lower is better) Translates to: AVFGGLEASTTR*NGESSAKMSHI Trigger: AATGTGTGACATCTTTGCTGAACTCTCTCCGTTCCACCTTGTGGTGGAGGCCTCCAGTCCACCAAACACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS GCA 72 bp | TTGGGTGTGGTGATTTATCGGATTCCAGCAGGAAAGTaGCTCCGTCCAACATGTGGCCTTAGTGGTTTAGAC | + |
|
Preference number: 6 (lower is better) Translates to: LGVVIYRIPAGK*LRPTCGLSGLD Trigger: GTCTAAACCACTAAGGCCACATGTTGGACGGAGGCACTTTCCTGCTGGAATCCGATAAATCACCACACCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS CAA 90 bp | TTCGGCCACGGTGTGGATGATCTGTGTCCCTTTTTCTTTCTATATTaGGGTGTGGTGATTTATCGGATTCCAGCAGGAAAGTGCCTCCGT | + |
|
Preference number: 6 (lower is better) Translates to: FGHGVDDLCPFFFLY*GVVIYRIPAGKCLR Trigger: ACGGAGGCACTTTCCTGCTGGAATCCGATAAATCACCACACCCAAATATAGAAAGAAAAAGGGACACAGATCATCCACACCGTGGCCGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||
| CDS TCA 72 bp | CATTCGGTTCGATTCTGCAAACTTCTCAAGGGATTATaGTTACTTTCCACTCTGCAGATCATAAAATCGCCA | + |
|
Preference number: 6 (lower is better) Translates to: HSVRFCKLLKGL*LLSTLQIIKSP Trigger: TGGCGATTTTATGATCTGCAGAGTGGAAAGTAATCATAATCCCTTGAGAAGTTTGCAGAATCGAACCGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000439079.1 |
||