Pregenerated sensors for LINC00410 (Homo sapiens)
Ensembl gene IDs: ENSG00000231674Ensembl transcript IDs: ENST00000419272.1
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAACAGCTCTGGTTTGCAGCTCGCAGCAGAGCTCCGGCTGGCATCTaGCAGGTGCCCCTCTGTGACGAAGCTTCCAGAGAAAGGAACAGG | + |
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Preference number: 5 (lower is better) Translates to: EQLWFAARSRAPAGI*QVPLCDEASRERNR Trigger: CCTGTTCCTTTCTCTGGAAGCTTCGTCACAGAGGGGCACCTGCCAGATGCCAGCCGGAGCTCTGCTGCGAGCTGCAAACCAGAGCTGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS GCA 90 bp | TCTGGTTTGCAGCTCGCAGCAGAGCTCCGGCTGGCATCTGGCAGGTaGCCCTCTGTGACGAAGCTTCCAGAGAAAGGAACAGGCAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: SGLQLAAELRLASGR*PSVTKLPEKGTGSN Trigger: ATTGCTGCCTGTTCCTTTCTCTGGAAGCTTCGTCACAGAGGGGCACCTGCCAGATGCCAGCCGGAGCTCTGCTGCGAGCTGCAAACCAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 90 bp | AGCTCGCAGCAGAGCTCCGGCTGGCATCTGGCAGGTGCCCCTCTGTaGCGAAGCTTCCAGAGAAAGGAACAGGCAGCAATTTTTGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: SSQQSSGWHLAGAPL*RSFQRKEQAAIFAV Trigger: AACAGCAAAAATTGCTGCCTGTTCCTTTCTCTGGAAGCTTCGTCACAGAGGGGCACCTGCCAGATGCCAGCCGGAGCTCTGCTGCGAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 90 bp | TGCTGTTCTGCAGCCTCCACTGGCGATACCCAGGCAAACAGGGTCTaGAGTGGACCCCTAGCAAACTCCAGCAGACTTGTTGAAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: CCSAASTGDTQANRV*SGPLANSSRLVESW Trigger: CCAGCTTTCAACAAGTCTGCTGGAGTTTGCTAGGGGTCCACTCCAGACCCTGTTTGCCTGGGTATCGCCAGTGGAGGCTGCAGAACAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 90 bp | AAACAGGGTCTGGAGTGGACCCCTAGCAAACTCCAGCAGACTTGTTaGAAGCTGGCTCCCTTTAGTCCAGCTACCTGGGAGGCTGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: KQGLEWTPSKLQQTC*KLAPFSPATWEAEA Trigger: TGCCTCAGCCTCCCAGGTAGCTGGACTAAAGGGAGCCAGCTTTCAACAAGTCTGCTGGAGTTTGCTAGGGGTCCACTCCAGACCCTGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS GCA 90 bp | CCCTCTGTGACGAAGCTTCCAGAGAAAGGAACAGGCAGCAATTTTTaGTGTTCTGCAGCCTCCACTGGCGATACCCAGGCAAACAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: PSVTKLPEKGTGSNF*CSAASTGDTQANRV Trigger: GACCCTGTTTGCCTGGGTATCGCCAGTGGAGGCTGCAGAACAGCAAAAATTGCTGCCTGTTCCTTTCTCTGGAAGCTTCGTCACAGAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 90 bp | AGAGAAAGGAACAGGCAGCAATTTTTGCTGTTCTGCAGCCTCCACTaGCGATACCCAGGCAAACAGGGTCTGGAGTGGACCCCTAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: RERNRQQFLLFCSLH*RYPGKQGLEWTPSK Trigger: TTTGCTAGGGGTCCACTCCAGACCCTGTTTGCCTGGGTATCGCCAGTGGAGGCTGCAGAACAGCAAAAATTGCTGCCTGTTCCTTTCTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 90 bp | CCTGTGTACCTGGTGTGGCCTCCTGCTGATGAATTTAGAGGCTGTTaGAAGATGTGGGATGTTGTCTTAGCACTGGCAGTCTGTGATTTT | + |
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Preference number: 5 (lower is better) Translates to: PVYLVWPPADEFRGC*KMWDVVLALAVCDF Trigger: AAAATCACAGACTGCCAGTGCTAAGACAACATCCCACATCTTTCAACAGCCTCTAAATTCATCAGCAGGAGGCCACACCAGGTACACAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 90 bp | AAATGTCTAATTTCCTACTCCACCTTCAGGGTTACCTTGCCCCCTTaGAAGTGCAGCTTAGTGGGAGGCATAAAAGCTCTTGTCTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: KCLISYSTFRVTLPP*KCSLVGGIKALVSA Trigger: AGCTGAGACAAGAGCTTTTATGCCTCCCACTAAGCTGCACTTTCAAGGGGGCAAGGTAACCCTGAAGGTGGAGTAGGAAATTAGACATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 90 bp | TCATTTTCTGAGTGTAAGTCTCTGGCTTTGCTCATCCTGTGTACCTaGTGTGGCCTCCTGCTGATGAATTTAGAGGCTGTTGAAAGATGT | + |
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Preference number: 5 (lower is better) Translates to: SFSECKSLALLILCT*CGLLLMNLEAVERC Trigger: ACATCTTTCAACAGCCTCTAAATTCATCAGCAGGAGGCCACACCAGGTACACAGGATGAGCAAAGCCAGAGACTTACACTCAGAAAATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 90 bp | TCCATCAATGCCGTATCTGCACAGGTAGACAATGAGTCTCAACCATaGGTGAGTGGTGAGAACCAAGACATAAATTTTGAGTATTTTGTC | + |
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Preference number: 5 (lower is better) Translates to: SINAVSAQVDNESQP*VSGENQDINFEYFV Trigger: GACAAAATACTCAAAATTTATGTCTTGGTTCTCACCACTCACTCATGGTTGAGACTCATTGTCTACCTGTGCAGATACGGCATTGATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 72 bp | TGGTTTGCAGCTCGCAGCAGAGCTCCGGCTGGCATCTaGCAGGTGCCCCTCTGTGACGAAGCTTCCAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: WFAARSRAPAGI*QVPLCDEASRE Trigger: TTCTCTGGAAGCTTCGTCACAGAGGGGCACCTGCCAGATGCCAGCCGGAGCTCTGCTGCGAGCTGCAAACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 72 bp | CAGAGCTCCGGCTGGCATCTGGCAGGTGCCCCTCTGTaGCGAAGCTTCCAGAGAAAGGAACAGGCAGCAATT | + |
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Preference number: 6 (lower is better) Translates to: QSSGWHLAGAPL*RSFQRKEQAAI Trigger: AATTGCTGCCTGTTCCTTTCTCTGGAAGCTTCGTCACAGAGGGGCACCTGCCAGATGCCAGCCGGAGCTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CAA 90 bp | CCCCTCTGTGACGAAGCTTCCAGAGAAAGGAACAGGCAGCAATTTTaGCTGTTCTGCAGCCTCCACTGGCGATACCCAGGCAAACAGGGT | + |
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Preference number: 6 (lower is better) Translates to: PLCDEASRERNRQQF*LFCSLHWRYPGKQG Trigger: ACCCTGTTTGCCTGGGTATCGCCAGTGGAGGCTGCAGAACAGCAAAAATTGCTGCCTGTTCCTTTCTCTGGAAGCTTCGTCACAGAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CAA 72 bp | GACGAAGCTTCCAGAGAAAGGAACAGGCAGCAATTTTaGCTGTTCTGCAGCCTCCACTGGCGATACCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: DEASRERNRQQF*LFCSLHWRYPG Trigger: GCCTGGGTATCGCCAGTGGAGGCTGCAGAACAGCAAAAATTGCTGCCTGTTCCTTTCTCTGGAAGCTTCGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS GCA 72 bp | TCCAGAGAAAGGAACAGGCAGCAATTTTTGCTGTTCTaGAGCCTCCACTGGCGATACCCAGGCAAACAGGGT | + |
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Preference number: 6 (lower is better) Translates to: SRERNRQQFLLF*SLHWRYPGKQG Trigger: ACCCTGTTTGCCTGGGTATCGCCAGTGGAGGCTGCAGAACAGCAAAAATTGCTGCCTGTTCCTTTCTCTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS GCA 72 bp | ACGAAGCTTCCAGAGAAAGGAACAGGCAGCAATTTTTaGTGTTCTGCAGCCTCCACTGGCGATACCCAGGCA | + |
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Preference number: 6 (lower is better) Translates to: TKLPEKGTGSNF*CSAASTGDTQA Trigger: TGCCTGGGTATCGCCAGTGGAGGCTGCAGAACAGCAAAAATTGCTGCCTGTTCCTTTCTCTGGAAGCTTCGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 72 bp | CTGGTGTGGCCTCCTGCTGATGAATTTAGAGGCTGTTaGAAGATGTGGGATGTTGTCTTAGCACTGGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: LVWPPADEFRGC*KMWDVVLALAV Trigger: GACTGCCAGTGCTAAGACAACATCCCACATCTTTCAACAGCCTCTAAATTCATCAGCAGGAGGCCACACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 72 bp | GAGAGATCTGCTGTCAGTCTGATGGGCTTCCCTTTATaGGTAACTCAACCTTTCTCTCTGGCTGCCCTTAAC | + |
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Preference number: 6 (lower is better) Translates to: ERSAVSLMGFPL*VTQPFSLAALN Trigger: GTTAAGGGCAGCCAGAGAGAAAGGTTGAGTTACCCATAAAGGGAAGCCCATCAGACTGACAGCAGATCTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 72 bp | GAGTGTAAGTCTCTGGCTTTGCTCATCCTGTGTACCTaGTGTGGCCTCCTGCTGATGAATTTAGAGGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: ECKSLALLILCT*CGLLLMNLEAV Trigger: AACAGCCTCTAAATTCATCAGCAGGAGGCCACACCAGGTACACAGGATGAGCAAAGCCAGAGACTTACACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 72 bp | GTGAGCCTTGATCTCAGCACTGTACTCCAGCCTGAGTaGTGGAGTGAGATCCCATTTCCTGCATTTTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: VSLDLSTVLQPE*WSEIPFPAFSF Trigger: AAAGGAAAATGCAGGAAATGGGATCTCACTCCATCACTCAGGCTGGAGTACAGTGCTGAGATCAAGGCTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 72 bp | AATGTGGTCACAGTTCATTTTCTGAGTGTAAGTCTCTaGCTTTGCTCATCCTGTGTACCTGGTGTGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: NVVTVHFLSVSL*LCSSCVPGVAS Trigger: GGAGGCCACACCAGGTACACAGGATGAGCAAAGCCAGAGACTTACACTCAGAAAATGAACTGTGACCACATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CAA 90 bp | AGAAAATGTGGTCACAGTTCATTTTCTGAGTGTAAGTCTCTGGCTTaGCTCATCCTGTGTACCTGGTGTGGCCTCCTGCTGATGAATTTA | + |
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Preference number: 6 (lower is better) Translates to: RKCGHSSFSECKSLA*LILCTWCGLLLMNL Trigger: TAAATTCATCAGCAGGAGGCCACACCAGGTACACAGGATGAGCAAAGCCAGAGACTTACACTCAGAAAATGAACTGTGACCACATTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS TCA 72 bp | GCCGTATCTGCACAGGTAGACAATGAGTCTCAACCATaGGTGAGTGGTGAGAACCAAGACATAAATTTTGAG | + |
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Preference number: 6 (lower is better) Translates to: AVSAQVDNESQP*VSGENQDINFE Trigger: CTCAAAATTTATGTCTTGGTTCTCACCACTCACTCATGGTTGAGACTCATTGTCTACCTGTGCAGATACGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CAA 90 bp | CATCATGACGCCTCTGGAAACCATGCAAAGAGACCTAGCTTCAGTTaGCTGAGTGATTTAGAAATAGTAGGGATGAGAATTCCATTGTGC | + |
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Preference number: 6 (lower is better) Translates to: HHDASGNHAKRPSFS*LSDLEIVGMRIPLC Trigger: GCACAATGGAATTCTCATCCCTACTATTTCTAAATCACTCAGCAAACTGAAGCTAGGTCTCTTTGCATGGTTTCCAGAGGCGTCATGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CAA 72 bp | CTGAGTGATTTAGAAATAGTAGGGATGAGAATTCCATaGTGCCACATTCTCAATCCTCTCCGTGCTATGACT | + |
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Preference number: 6 (lower is better) Translates to: LSDLEIVGMRIP*CHILNPLRAMT Trigger: AGTCATAGCACGGAGAGGATTGAGAATGTGGCACAATGGAATTCTCATCCCTACTATTTCTAAATCACTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS CCA 72 bp | CTACAACCAGAGAGAAAACCTGGTTCAAGCTTAGTTTaGGTGGATACGAAATGTTGGGTTGAAAATTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: LQPERKPGSSLV*VDTKCWVENSF Trigger: AAAAGAATTTTCAACCCAACATTTCGTATCCACCCAAACTAAGCTTGAACCAGGTTTTCTCTCTGGTTGTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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| CDS GCA 72 bp | GAGAATTCCATTGTGCCACATTCTCAATCCTCTCCGTaGTATGACTTAAATGTAAACTCAAGATTCAAATTT | + |
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Preference number: 6 (lower is better) Translates to: ENSIVPHSQSSP*YDLNVNSRFKF Trigger: AAATTTGAATCTTGAGTTTACATTTAAGTCATAGCACGGAGAGGATTGAGAATGTGGCACAATGGAATTCTC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000419272.1 |
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